notbugIf you buy from Amazon USA, please support us by using this link.
Port details
trimmomatic Flexible read trimming tool for Illumina NGS data
0.35 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-03-17 08:21:26
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
Also Listed In: java
License: GPLv3
Trimmomatic performs a variety of useful trimming tasks for illumina
NGS paired-end and single ended data.

WWW: http://www.usadellab.org/cms/?page=trimmomatic
SVNWeb : Homepage
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (10 items)
  1. /usr/local/share/licenses/trimmomatic-0.35/catalog.mk
  2. /usr/local/share/licenses/trimmomatic-0.35/LICENSE
  3. /usr/local/share/licenses/trimmomatic-0.35/GPLv3
  4. share/trimmomatic/adapters/NexteraPE-PE.fa
  5. share/trimmomatic/adapters/TruSeq2-PE.fa
  6. share/trimmomatic/adapters/TruSeq2-SE.fa
  7. share/trimmomatic/adapters/TruSeq3-PE-2.fa
  8. share/trimmomatic/adapters/TruSeq3-PE.fa
  9. share/trimmomatic/adapters/TruSeq3-SE.fa
  10. share/java/classes/trimmomatic.jar
  11. Collapse this list.
Dependency lines:
  • trimmomatic>0:biology/trimmomatic

To install the port: cd /usr/ports/biology/trimmomatic/ && make install clean
To add the package: pkg install trimmomatic

PKGNAME: trimmomatic

There is no flavor information for this port.

distinfo:

SHA256 (Trimmomatic-0.35.zip) = 43b993ffa91c039b529db8334bc6aa4b0d601e69c79aaa9a1457ecd1c2c3cc69
SIZE (Trimmomatic-0.35.zip) = 129810


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Runtime dependencies:
  1. java : java/openjdk8

This port is required by:

for Run
Configuration Options
     No options to configure

USES:
zip

Master Sites:
  1. http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/

Number of commits found: 2

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
31 Jan 2018 01:07:08
Original commit files touched by this commit  0.35
Revision:460452
jwb search for other commits by this committer
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
17 Mar 2016 08:21:14
Original commit files touched by this commit  0.35
Revision:411261
wen search for other commits by this committer
Trimmomatic performs a variety of useful trimming tasks for illumina
NGS paired-end and single ended data.

WWW: http://www.usadellab.org/cms/?page=trimmomatic

PR:		208044
Submitted by:	bacon4000@gmail.com

Number of commits found: 2

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
hostapdApr 23
hostapdApr 23
hostapdApr 23
hostapdApr 23
hostapdApr 23
wpa_supplicantApr 23
wpa_supplicantApr 23
wpa_supplicantApr 23
wpa_supplicantApr 23
wpa_supplicantApr 23
istioApr 22
ghostscript9-agpl-baseApr 21
ghostscript9-agpl-x11Apr 21
gnutlsApr 19
dovecotApr 18

16 vulnerabilities affecting 137 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2019-04-23 04:07:39


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 36767
Broken 124
Deprecated 656
Ignore 345
Forbidden 3
Restricted 164
No CDROM 74
Vulnerable 36
Expired 512
Set to expire 631
Interactive 0
new 24 hours 3
new 48 hours7
new 7 days49
new fortnight77
new month143

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2019 Dan Langille. All rights reserved.