| Port details on branch 2026Q2 |
- ugene Integrated bioinformatics toolkit
- 53.1_1 biology
 =0      53.1_1Version of this port present on the latest quarterly branch. - Maintainer: makc@FreeBSD.org
- Port Added: 2026-04-19 18:13:00
- Last Update: 2026-04-21 20:16:07
- Commit Hash: 85eb215
- Also Listed In: science
- License: GPLv2+
- WWW:
- https://ugene.net/
- Description:
- Unipro UGENE is multiplatform, open-source software with the main goal of
assisting molecular biologists without much expertise in bioinformatics to
manage, analyze, and visualize their data. UGENE integrates widely used
bioinformatics tools within one common user interface.
UGENE toolkit supports multiple biological data formats and allows the
retrieval of data from remote data sources. It provides visualization
modules for biological objects such as annotated genome sequences, Next
Generation Sequencing (NGS) assembly data, multiple sequence alignments,
phylogenetic trees, and 3D structures.
  ¦  ¦  ¦  ¦ 
- Manual pages:
-
- pkg-plist: as obtained via:
make generate-plist - USE_RC_SUBR (Service Scripts)
- no SUBR information found for this port
- Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/ugene/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/ugene
- pkg install ugene
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: ugene
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1775033524
SHA256 (ugeneunipro-ugene-53.1_GH0.tar.gz) = 3eca3bc97824d855b5dfe4844b7a5d46052f98279fa015c7e152e111f89c4673
SIZE (ugeneunipro-ugene-53.1_GH0.tar.gz) = 27484438
No package information for this port in our database- Sometimes this happens. Not all ports have packages. Perhaps there is a build error. Check the fallout link:
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- cmake : devel/cmake-core
- ninja : devel/ninja
- update-desktop-database : devel/desktop-file-utils
- pkgconf>=1.3.0_1 : devel/pkgconf
- update-mime-database : misc/shared-mime-info
- xorgproto>=0 : x11/xorgproto
- xorgproto>=0 : x11/xorgproto
- x11.pc : x11/libX11
- xtst.pc : x11/libXtst
- qt5-buildtools>=5.15 : devel/qt5-buildtools
- lrelease : devel/qt5-linguisttools
- qt5-qmake>=5.15 : devel/qt5-qmake
- Runtime dependencies:
-
- bash : shells/bash
- update-desktop-database : devel/desktop-file-utils
- update-mime-database : misc/shared-mime-info
- x11.pc : x11/libX11
- xtst.pc : x11/libXtst
- libqtiff.so : graphics/qt5-imageformats
- Library dependencies:
-
- libhts.so : biology/htslib
- libGL.so : graphics/libglvnd
- libGLU.so : graphics/libGLU
- libQt5Core.so : devel/qt5-core
- libQt5Gui.so : x11-toolkits/qt5-gui
- libQt5Network.so : net/qt5-network
- libQt5NetworkAuth.so : net/qt5-networkauth
- libQt5PrintSupport.so : print/qt5-printsupport
- libQt5Svg.so : graphics/qt5-svg
- libQt5Test.so : devel/qt5-testlib
- libQt5WebSockets.so : www/qt5-websockets
- libQt5Widgets.so : x11-toolkits/qt5-widgets
- libQt5Xml.so : textproc/qt5-xml
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_ugene
- USES:
- cmake compiler:c++14-lang desktop-file-utils gl localbase:ldflags pkgconfig qt:5 shared-mime-info shebangfix xorg
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 2
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
53.1_1
21 Apr 2026 20:16:07
 |
Robert Clausecker (fuz) |
biology/ugene: fix build on aarch64
The bundled copy of htslib is missing required assembly source files,
causing build failure due to undefined symbols an aarch64.
Unbundle htslib and use our working port biology/htslib instead.
Approved by: makc (maintainer)
MFH: 2026Q2
PR: 293379
(cherry picked from commit 372104dd71f6e0b1d463713793510b0f7ca5f0a8) |
53.1
19 Apr 2026 17:58:03
|
Max Brazhnikov (makc) |
biology/ugene: Update to 53.1
Release Notes: https://ugene.net/changelist.html
Port changes:
- Fix build on non-x86, mark IGNORE for aarch64.
- Switch to cmake, qmake is not supported anymore.
- Drop unused sqlite, renew Qt components.
- Convert to PORTDATA, use shebangfix.
Special thanks to fuz@ for testing and fixing non-x86 build!
PR: 293379
(cherry picked from commit 7f73f34aa06d2c12fc03476b05ef8658c97b6989) |
Number of commits found: 2
|
As an Amazon Associate I earn from qualifying purchases.