Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

htslib C library for high-throughput sequencing data formats

1.23.1 1.23.1Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2026-04-21 20:18:18

Also Listed In: devel

License: BSD3CLAUSE MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• htslib>0:biology/htslib

kmcp Accurate metagenomic profiling & fast large-scale genome searching

0.9.4_26 0.9.4_29Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-04-10 17:07:00

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• kmcp>0:biology/kmcp

ncbi-entrez-direct Access to the NCBI's suite of interconnected databases

14.9.20210423_42 14.9.20210423_45Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2026-04-10 17:07:00

Also Listed In: perl5

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-entrez-direct>0:biology/ncbi-entrez-direct

seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation

2.11.0_7 2.13.0_5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-05-09 17:54:55

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• seqkit>0:biology/seqkit

taxonkit Practical and efficient NCBI taxonomy toolkit

0.19.0_17 0.20.0_5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-04-10 17:07:00

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• taxonkit>0:biology/taxonkit

ugene Integrated bioinformatics toolkit

53.1_1 53.1_1Version of this port present on the latest quarterly branch.

Maintainer: makc@FreeBSD.org

Port Added: 2026-04-19 18:13:00

Also Listed In: science

License: GPLv2+

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ugene>0:biology/ugene

unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers

0.20.0_21 0.20.0_24Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-04-10 17:07:00

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• unikmer>0:biology/unikmer