R-cran-caret Classification and Regression Training

6.0.86_1 devel =0 6.0.85Version of this port present on the latest quarterly branch.

Maintainer: tota@FreeBSD.org

Port Added: 2011-09-03 00:46:50

Last Update: 2020-05-05 17:07:54

SVN Revision: 534095

License: GPLv2+

Description:

The caret package (short for Classification And REgression Training) is a set of functions that attempt to streamline the process for creating predictive models. The package contains tools for: * data splitting * pre-processing * model tuning using resampling * variable importance estimation as well as other functionality. WWW: https://topepo.github.io/caret/

SVNWeb : Homepage

pkg-plist: as obtained via: make generate-plist

Expand this list (3 items)

1. /usr/local/share/licenses/R-cran-caret-6.0.86_1/catalog.mk
2. /usr/local/share/licenses/R-cran-caret-6.0.86_1/LICENSE
3. /usr/local/share/licenses/R-cran-caret-6.0.86_1/GPLv2+

Collapse this list.

Dependency lines:

• R-cran-caret>0:devel/R-cran-caret

To install the port: cd /usr/ports/devel/R-cran-caret/ && make install clean

To add the package: pkg install R-cran-caret

PKGNAME: R-cran-caret

Flavors: there is no flavor information for this port.

distinfo:

TIMESTAMP = 1586008534 SHA256 (caret_6.0-86.tar.gz) = da4a1c7c3fbf645c5b02871e563a77404622b83623f0d1c5dc1425de7aa4ce37 SIZE (caret_6.0-86.tar.gz) = 5264447

Dependencies

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:

1. R-cran-ggplot2>0 : graphics/R-cran-ggplot2
2. R-cran-foreach>0 : devel/R-cran-foreach
3. R-cran-plyr>0 : devel/R-cran-plyr
4. R-cran-ModelMetrics>=1.2.2.2 : devel/R-cran-ModelMetrics
5. R-cran-reshape2>0 : devel/R-cran-reshape2
6. R-cran-recipes>=0.1.10 : math/R-cran-recipes
7. R-cran-withr>=2.0.0 : devel/R-cran-withr
8. R-cran-pROC>0 : graphics/R-cran-pROC
9. R : math/R
10. gfortran9 : lang/gcc9
11. as : devel/binutils

Runtime dependencies:

1. R-cran-ggplot2>0 : graphics/R-cran-ggplot2
2. R-cran-foreach>0 : devel/R-cran-foreach
3. R-cran-plyr>0 : devel/R-cran-plyr
4. R-cran-ModelMetrics>=1.2.2.2 : devel/R-cran-ModelMetrics
5. R-cran-reshape2>0 : devel/R-cran-reshape2
6. R-cran-recipes>=0.1.10 : math/R-cran-recipes
7. R-cran-withr>=2.0.0 : devel/R-cran-withr
8. R-cran-pROC>0 : graphics/R-cran-pROC
9. R : math/R
10. gfortran9 : lang/gcc9

There are no ports dependent upon this port

Configuration Options

No options to configure

USES:

cran:auto-plist,compiles

Master Sites:

1. http://camoruco.ing.uc.edu.ve/cran/src/contrib/
2. http://camoruco.ing.uc.edu.ve/cran/src/contrib/Archive/caret/
3. http://cran.utstat.utoronto.ca/src/contrib/
4. http://cran.utstat.utoronto.ca/src/contrib/Archive/caret/
5. https://cloud.r-project.org/src/contrib/
6. https://cloud.r-project.org/src/contrib/Archive/caret/
7. https://cran.cnr.berkeley.edu/src/contrib/
8. https://cran.cnr.berkeley.edu/src/contrib/Archive/caret/
9. https://cran.csiro.au/src/contrib/
10. https://cran.csiro.au/src/contrib/Archive/caret/
11. https://cran.gis-lab.info/src/contrib/
12. https://cran.gis-lab.info/src/contrib/Archive/caret/
13. https://cran.ism.ac.jp/src/contrib/
14. https://cran.ism.ac.jp/src/contrib/Archive/caret/
15. https://cran.ma.imperial.ac.uk/src/contrib/
16. https://cran.ma.imperial.ac.uk/src/contrib/Archive/caret/
17. https://mirror.las.iastate.edu/CRAN/src/contrib/
18. https://mirror.las.iastate.edu/CRAN/src/contrib/Archive/caret/
19. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/
20. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/Archive/caret/
21. https://stat.ethz.ch/CRAN/src/contrib/
22. https://stat.ethz.ch/CRAN/src/contrib/Archive/caret/

math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572

- Update to 6.0-86

- Update to 6.0-85

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

- Update to 6.0-84

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

- Update to 6.0-81

- Update to 6.0-80

- Update to 6.0-79

- Update to 6.0-78
- Update WWW: line in pkg-descr

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

- Update to 6.0-77

- Update to 6.0-76

- Update to 6.0-73

- Update to 6.0-71
- Add "compiles" argument to USES=cran

- Update to 6.0-70

- Update to 6.0-68

Remove ${PORTSDIR}/ from dependencies, categories d, e, f, and g.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 6.0-64
- Fix LICENSE

- Update to 6.0-62
- Unbreak
- Update LICENSE section

- Postpone EXPIRATION_DATE to fix math/R-cran-car and
  devel/R-cran-caret

Chase R-cran-car expiration date

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

- Update to 6.0-24

- Update to 6.0-22

- Update to 6.0-21

Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen

Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

Add NO_STAGE all over the place in preparation for the staging support (cat:
devel part 4)

- Update to 5.17-7

- Update to 5.16-24

Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota

- Update to 5.16-04

update math/R to 2.15.3, and adjust dependent ports

- Update to 5.15-61

- Update to 5.15-052

update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen

- Update to 5.15-048

- Update to 5.15-044
- Convert to new Makefile header
- Trim WWW: line in pkg-descr

update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports

- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:    thierry, tota, wen
Approved by:    D. Rue (maintainer) [1], wen [2]

- Update to 5.15-023

Feature safe:   yes

update math/R to 2.14.2, and adjust dependent ports

- Update to 5.14-023

- Update to 5.13-20

- Update to 5.12-04

update math/R to 2.14.1, and adjust dependent ports

- Update to 5.09-012

- Update to 5.09-006

Feature safe:   yes

update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:    linimon (portmgr), thierry, tota, wen
Feature safe:   yes

- Update to 5.08-011

Feature safe:   yes

- Update to 5.07-024

Feature safe:   yes

- Move PKGNAMEPREFIX defined in each R-cran- related ports Makefile
  to Mk/bsd.cran.mk

PR:             ports/162238
Submitted by:   tota (myself)
Approved by:    wen (maintainer of Mk/bsd.cran.mk and many related ports),
                David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
                  (maintainer of math/R-cran-RSvgDevice and math/R-cran-car),
                Dan Rue <drue_AT_therub_DOT_org>
                  (maintainer of math/R-cran-psych, timeout > 2 weeks)
Feature safe:   yes

- Update to 5.07-005

- Update to 5.07-001

- Update to 5.05.004

update math/R to 2.13.2, and adjust dependent ports

- Update to 5.04-007

- Update to 5.03-003

- Update to 5.02-011

- Update to 5.01-001

- Add a new port: devel/R-cran-caret

  The caret package (short for Classification And REgression Training)
  is a set of functions that attempt to streamline the process for
  creating predictive models. The package contains tools for:

   * data splitting
   * pre-processing
   * model tuning using resampling
   * variable importance estimation

  as well as other functionality.

  WWW:  http://caret.r-forge.r-project.org/

18 vulnerabilities affecting 165 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities

Last updated:
2020-05-29 07:54:06