- Add new port: math/R-cran-ipred
Improved predictive models by indirect classification and bagging
for classification, regression and survival problems as well as
resampling based estimators of prediction error.
WWW: https://cran.r-project.org/web/packages/ipred/
- Add new port: math/R-cran-prodlim
Fast and user friendly implementation of nonparametric estimators
for censored event history (survival) analysis. Kaplan-Meier and
Aalen-Johansen method.
WWW: https://cran.r-project.org/web/packages/prodlim/
A cross-platform numerical analysis and data processing library. It supports
several programming languages (C++, C#, Pascal, VBA) and several operating
systems. ALGLIB features include:
* Data analysis (classification/regression, including neural networks)
* Optimization and nonlinear solvers
* Interpolation and linear/nonlinear least-squares fitting
* Linear algebra (direct algorithms, EVD/SVD), direct and iterative linear
solvers, Fast Fourier Transform and many other algorithms (numerical
integration, ODEs, statistics, special functions)
This is a free edition of alglib.
WWW: http://www.alglib.net
PR: 221681
Submitted by: yuri@rawbw.com
Update the mate desktop to 1.18.
* The MATE DE is now GTK+3 based
* mate-calc has come back.
* New USE_MATE=mixer macro
* Add license
* Review dependancies
* Swich to USES=localbase
* atril/eom options reworked into option helper
Thanks to Eric Turgeon for submitting the bulk of this MATE update.
Obtained from: gnome devel repo
- Add new port math/R-cran-sf
Support for simple features, a standardized way to encode spatial
vector data. Binds to GDAL for reading and writing data, to GEOS
for geometrical operations, and to Proj.4 for projection conversions
and datum transformations.
WWW: https://cran.r-project.org/web/packages/sf/
Submitted by: Rainer Hurling <rhurlin_AT_gwdg_DOT_de> (via private e-mail)
- Add new port: math/R-cran-units
Support for measurement units in R vectors; automatic propagation,
conversion, derivation and simplification of units; raising errors
in case of unit incompatibility. Compatible with the difftime class.
Uses the UNIDATA udunits library and unit database for unit conversion
and compatibility checking.
WWW: https://cran.r-project.org/web/packages/units/
- New port math/octave-forge-bsltl.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is bsltl.
The BSLTL package is a free collection of OCTAVE/MATLAB routines for working
with the biospeckle laser technique.
Add new port math/viennacl
ViennaCL is a free open-source linear algebra library for computations on
many-core
architectures (GPUs, MIC) and multi-core CPUs. The library is written in C++ and
supports CUDA, OpenCL, and OpenMP (including switches at runtime).
http://viennacl.sourceforge.net/
PR: 219714
Submitted by: pfg
new port: math/clblast. This adds clblast (notice the t!) another BLAS library
for GPUs, with the distinct difference that clblast targets portable performance
across AMD, Intel, and NVIDIA accelerators.
Reported by: swills (mentor)
Reviewed by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D10919
new port: math/blis
BLIS is a portable software framework for instantiating high-performance
BLAS-like dense linear algebra libraries. The framework was designed to isolate
essential kernels of computation that, when optimized, immediately enable
optimized implementations of most of its commonly used and computationally
intensive operations. BLIS is written in ISO C99 and available under a
BSD3CLAUSE. While BLIS exports a new BLAS-like API, it also includes a BLAS
compatibility layer which gives application developers access to BLIS
implementations via traditional BLAS routine calls. (from their github)
Reviewed by: swills (mentor)
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D10811
qualityTools: Statistical Methods for Quality Science
Contains methods associated with the Define, Measure, Analyze, Improve and
Control (i.e. DMAIC) cycle of the Six Sigma Quality Management
methodology.It covers distribution fitting, normal and non-normal process
capability indices, techniques for Measurement Systems Analysis especially
gage capability indices and Gage Repeatability (i.e Gage RR) and
Reproducibility studies, factorial and fractional factorial designs as
well as response surface methods including the use of desirability
functions.
WWW: http://www.r-qualitytools.org/
PR: 213104
Submitted by: Pedro Giffuni
2017-04-30 devel/stormlib-ghost++: Unfetchable for more than six months (google
code has gone away)
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gone away)
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gone away)
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gone away)
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gone away)
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code has gone away)
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(google code has gone away)
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2017-04-30 math/carve: Unfetchable for more than six months (google code has
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2017-04-30 math/libjbigi: Unfetchable for more than six months (google code has
gone away)
2017-04-30 multimedia/gcap: Unfetchable for more than six months (google code
has gone away)
2017-04-30 multimedia/freetuxtv: Unfetchable for more than six months (google
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2017-04-30 multimedia/opencinematools: Unfetchable for more than six months
(google code has gone away)
2017-04-30 multimedia/vstream-client: Unfetchable for more than six months
(google code has gone away)
2017-04-30 biology/treeviewx: Unfetchable for more than six months (google code
has gone away)
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2017-04-30 www/xpi-pencil: Unfetchable for more than six months (google code has
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2017-04-30 www/feedonfeeds: Unfetchable for more than six months (google code
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2017-04-30 www/jspacker: Unfetchable for more than six months (google code has
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2017-04-30 www/cocoon: Overly complex port with no maintainer since 2008,
requires openjdk 1.6
2017-04-30 www/mod_authz_unixgroup24: Unfetchable for more than six months
(google code has gone away)
2017-04-30 www/trac-down: Upstream is gone
www/tengine
2017-04-30 www/arora: Unfetchable for more than six months (google code has gone
away)
2017-04-30 www/py-postmarkup: Unfetchable for more than six months (google code
has gone away)
2017-04-30 www/py-dotcloud.cli: deprecated in upstream
2017-04-30 www/closure-linter: Unfetchable for more than six months (google code
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(google code has gone away)
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2017-04-30 www/py-django-app-plugins: Unfetchable for more than six months
(google code has gone away)
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(google code has gone away)
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2017-04-30 www/mod_log_firstbyte: Unfetchable for more than six months (google
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2017-04-30 www/gaeo: Unfetchable for more than six months (google code has gone
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2017-04-30 www/xpi-pentadactyl: Unfetchable for more than six months (google
code has gone away)
2017-04-30 net-mgmt/py-flowtools: Unfetchable for more than six months (google
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2017-04-30 chinese/ydict: Unfetchable for more than six months (google code has
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2017-04-30 chinese/py-cconv: Unfetchable for more than six months (google code
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2017-04-30 chinese/fcitx-googlepinyin: Unfetchable for more than six months
(google code has gone away)
2017-04-30 chinese/php-cconv: Unfetchable for more than six months (google code
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(google code has gone away)
2017-04-30 databases/jdbm2: Unfetchable for more than six months (google code
has gone away)
2017-04-30 databases/akonadi-googledata: Unfetchable for more than six months
(google code has gone away)
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2017-04-30 graphics/rubygem-gemojione2: Use graphics/rubygem-gemojione instead
Provides functions for multivariate and propensity score matching and
for finding optimal balance based on a genetic search algorithm. A
variety of univariate and multivariate metrics to determine if balance
has been obtained are also provided.
WWW: http://sekhon.berkeley.edu/matching
libxlsxwriter is a C library that can be used to write text, numbers, formulas
and hyperlinks to multiple worksheets in an Excel 2007+ XLSX file. It supports
features such as:
* 100% compatible Excel XLSX files.
* Full Excel formatting.
* Merged cells.
* Defined names.
* Autofilters.
* Charts.
* Worksheet PNG/JPEG images.
* Memory optimization mode for writing large files.
* Source code available on GitHub.
* FreeBSD License.
* ANSI C.
* Compiles for 32 and 64 bit.
* The only dependency is on zlib.
WWW: http://libxlsxwriter.github.io/
- Resurrect `math/mprime' and unbreak (stagify)
- Update to version 26.6, the latest for the i386 binary
- Do not mangle version with `0.0.'-prefix, use official one
- Add missing LIB_DEPENDS against `misc/compat9x'
- Define DOCS option and use target helper target to install
- Make installation commands vocal (unmute them)
- Update and tidy up port description text while here
- Drop deprecated @dirrm entry from pkg-plist
TIMESTAMP (mprime266-FreeBSD.tar.gz) = 1302303090
PyWavelets is a free Open Source library for wavelet transforms in Python.
Wavelets are mathematical basis functions that are localized in both time and
frequency. Wavelet transforms are time-frequency transforms employing wavelets.
They are similar to Fourier transforms, the difference being that Fourier
transforms are localized only in frequency instead of in time and frequency.
WWW: https://github.com/PyWavelets/pywt
PR: 217426
Submitted by: eric@camachat.org
`math/acalc' is a simple and pretty Qt4-based expression calculator.
Because GitHub releases (tarballs) are not fetched with correct modification
time, set TIMESTAMP to 1481206796 which corresponds to commit 6c032ba tagged
as this release.
PR: 215158
Submitted by: Andrey Ponomarenko
Remove expired ports:
2017-02-08 misc/teslams: Broken for more than 6 months
2017-02-08 devel/libdict: Broken for more than 6 months
2017-02-08 math/R-cran-SuppDists: Broken for more than 6 months
2017-02-08 devel/py-re2: Broken for more than 6 months
2017-02-08 net-p2p/digitalcoin: Broken for more than 6 months
Remove expired ports:
2017-01-28 databases/ruby-rdbc1: Upstream no longer active
2017-01-28 databases/ruby-sybct: Upstream no longer active
2017-01-28 databases/ruby-o_dbm: Upstream no longer active
2017-01-28 databases/ruby-cdb: Upstream no longer active
2017-01-28 devel/ruby-rbison: Does not work on modern ruby
2017-01-28 devel/ruby-property: Upstream no longer exists
2017-01-28 devel/ruby-dialogs: Upstream no longer active
2017-01-28 devel/ruby-byaccr: Upstream no longer active
2017-01-28 devel/ruby-aspectr: Use rubygem-aspectr instead
2017-01-28 devel/ruby-locale: No longer useful
2017-01-28 devel/ruby-wirble: Upstream no longer active
2017-01-28 devel/ruby-tzfile: Upstream no longer exists
2017-01-28 devel/ruby-rreadline: Upstream no longer exists
2017-01-28 devel/ruby-intl: Use devel/rubygem-gettext instead
2017-01-28 graphics/ruby-imlib2: Upstream no longer active
2017-01-28 graphics/ruby-image_size: Upstream no longer active
2017-01-28 graphics/ruby-svg: Use graphics/rubygem-rsvg2 instead
2017-01-28 irc/ruby-rice: Upstream no longer active
2017-01-28 irc/ruby-rica: Upstream no longer active
2017-01-28 irc/ruby-irc: Upstream no longer active
2017-01-28 japanese/ruby-usersguide: Does not exist upstream
2017-01-28 japanese/ruby-mecab: Upstream no longer active
2017-01-28 mail/ruby-rmail: Upstream no longer active
2017-01-28 mail/ruby-rfilter: Upstream no longer active
2017-01-28 math/ruby-algebra: Use rubygem-algebra instead
2017-01-28 net/ruby-tserver: Upstream no longer active
2017-01-28 net/ruby-tcpsocketpipe: Upstream no longer active
2017-01-28 net/ruby-icmp: Upstream no longer active
2017-01-28 net/ruby-dict: Upstream no longer active
2017-01-28 palm/palmos-sdk: Upstream no longer exists
2017-01-28 security/ruby-hmac: Use www/rubygem-ruby-hmac instead
2017-01-28 security/ruby-tcpwrap: Upstream no longer active
2017-01-28 security/ruby-password: Upstream no longer active
2017-01-28 sysutils/ruby-quota: Upstream no longer active
2017-01-28 textproc/ruby-rss.alt: Upstream no longer active
2017-01-28 textproc/ruby-rss: Upstream no longer exists
2017-01-28 textproc/ruby-htmlrepair: Upstream no longer exists
2017-01-28 textproc/ruby-xmlscan: Upstream no longer active
2017-01-28 textproc/ruby-xml-configfile: Upstream no longer exists
2017-01-28 textproc/ruby-htmlsplit: Upstream no longer exists
2017-01-28 www/ruby-google: Upstream no longer active
2017-01-28 archivers/ruby-lha: Upstream no longer active
2017-01-28 x11/ruby-X11: Upstream no longer active
2017-01-28 audio/ruby-audiofile: Broken on modern versions of Ruby
2017-01-28 audio/ruby-mp3tag: Upstream no longer active
2017-01-28 converters/ruby-dump.rb: Upstream no longer active
SC-IM is a spreadsheet program that is based on SC
Some of the features of SC-IM
* UNDO / REDO.
* 65.536 rows and 702 columns supported. (The number of rows can be expanded
to 1.048.576 if wished).
* CSV / TAB delimited file import and export.
* XLS / XLSX file import.
* Key-mappings.
* Sort of rows.
* Filter of rows.
* Cell shifting.
* 256 color support - screen colors can be customized by user, even at runtime.
* Colorize cells or give them format such as bold or underline.
* Wide character support. The following alphabets are supported: English,
Spanish, French, Italian, German, Portuguese, Russian, Ukrainian, Greek,
Turkish, Czech, Japanese, Chinese.
* Implement external functions in the language you prefer and use them in SC-IM
* Use SC-IM as a non-interactive calculator, reading its input from a external
script.
* More movements commands implemented !
* Input and Output was completely rewritten
WWW: https://github.com/andmarti1424/sc-im
Add new port math/opensolaris-libm
In 2006, Sun Microsystems released math and vector math libraries as
part of their effort to open-source Solaris:
libmvec - vector math library
This library contains function to evaluate common mathematical functions
for several arguments at once. The argument values are specified by one
or more vectors (arrays) of data, and the corresponding result values
are stored in another vector.
libm - C99 math library
Functions in this library provide common elementary mathematical
functions and floating point environment routines defined by System V,
ANSI C, POSIX, and so on. Additional functions in this library provide
extended support for handling floating point exceptions.
The original source has been modified to build on FreeBSD and DragonFly
using GCC or clang and the GNU assembler. All fixes introduced by Nexenta
and Illumos projects have also been incorporated. Missing x86_64 variants
of lrint and lround have added. The floating-point exception logging
including address->symbol tranlation has also been implemented.
math/rubygem-algebra: create port
This is a library for mathematical computations. Our purpose is to express the
mathematical object naturally in Ruby. Though it is not operated fast, we can
see the algorithm of the mathematical processing not in black box but in
scripts. This library is in development stage.
WWW: https://github.com/kunishi/algebra-ruby2
yt supports structured, variable-resolution meshes, unstructured meshes,
and discrete or sampled data such as particles. Focused on driving
physically-meaningful inquiry, yt has been applied in domains such as
astrophysics, seismology, nuclear engineering, molecular dynamics, and
oceanography.
WWW: http://yt-project.org
PR: 214565
Submitted by: yuri@rawbw.com
- Add new port: math/R-cran-backports
Implementations of functions which have been introduced in R since
version 3.0.0. The backports are conditionally exported which results
in R resolving the function names to the version shipped with R (if
available) and uses the implemented backports as fallback. This way
package developers can make use of the new functions without worrying
about the minimum required R version.
WWW: https://cran.r-project.org/web/packages/backports/
- Add p5-Math-BigInt-Lite 0.16
Math::BigInt is not very good suited to work with small (read: typical less than
10 digits) numbers, since it has a quite high per-operation overhead and is thus
much slower than normal Perl for operations.
But for some applications, you want fast speed for small numbers without the
risk of overflowing. This is were Math::BigInt::Lite comes into play.
Math::BigInt::Lite objects should behave in every way like Math::BigInt objects,
that is apart from the different label, you should not be able to tell the
difference. Since Math::BigInt::Lite is designed with speed in mind, there are
certain limitations build-in. In praxis, however, you will not feel them,
because everytime something gets to big to pass as Lite (literally), it will
upgrade the objects and operation in question to Math::BigInt.
WWW: http://search.cpan.org/dist/Math-BigInt-Lite/
Remove expired ports:
2016-11-01 math/octave-forge-octgpr: Broken for more than 6 months
2016-11-01 math/octave-forge-spline-gcvspl: Broken for more than 6 months
2016-11-01 www/pear-Services_SharedBook: Broken for more than 6 months
2016-11-01 devel/py-snackwich: Depends on broken and expiring devel/py-snack
2016-11-01 math/octave-forge-ad: Broken for more than 6 months
2016-11-01 math/octave-forge-xraylib: Broken for more than 6 months
2016-11-01 x11-toolkits/py-traitsbackendwx: Broken for more than 6 months
2016-11-01 x11-toolkits/py-traitsgui: Depends on broken and expiring
x11-toolkits/py-traitsbackendwx
2016-11-01 security/lsh: Broken for more than 6 months
2016-11-01 devel/py-snack: Broken for more than 6 months
2016-11-01 security/massh: Broken for more than 6 months
2016-11-01 www/hydra: Broken for more than 6 months
2016-11-01 math/py-pyfst: Broken for more than 6 months
2016-11-01 archivers/ruby-zip: Broken will all supported versions of Ruby
2016-11-01 devel/ruby-langscan: Broken will all supported versions of Ruby
New port, math/amath: simple command line calculator
https://gitlab.com/rnger/amath/
Features a case sensitive command line interface, internal IEEE 754
calculations with 15 significant digits, calculations with real and complex
numbers, variables and user defined functions, logarithmic and exponential
functions, trigonometric and hyperbolic function and selected mathematical
constants and rounding functions.
PR: 209905
Submitted by: cs@innolan.dk (maintainer)
Reviewed by: mat
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8386
Remove math/libR
- The libR option in math/R has been turned on by default since 2016-06-26.
- A request for comments regarding the removal, posted to ports@ on
2016-07-16, did not result in any requests for it to remain in the tree.
- After a restructuring of math/R, math/libR has been marked BROKEN since
2016-07-09 without any complaints.
- No ports depend on it.
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8260
math/ceres-solver: add new port
Based on: Gentoo (1.11.0 ebuild)
Tested on: graphics/openmvg from @outpaddling's repo (build on 10.3 amd64)
Ceres Solver is an open source C++ library for modeling and solving
large, complicated optimization problems. It is a feature rich, mature
and performant library which has been used in production at Google
since 2010. Ceres Solver can solve two kinds of problems.
1. Non-linear Least Squares problems with bounds constraints.
2. General unconstrained optimization problems.
http://ceres-solver.org/
Extension for PHP that provides few dozens routines for statistical
computation.
WWW: http://pecl.php.net/package/stats/
PR: 212767
Submitted by: dbaio@bsd.com.br
- Add new port: math/R-cran-numDeriv
Methods for calculating (usually) accurate numerical first and
second order derivatives. Accurate calculations are done using
'Richardson"s' extrapolation or, when applicable, a complex step
derivative is available. A simple difference method is also provided.
Simple difference is (usually) less accurate but is much quicker
than 'Richardson"s' extrapolation and provides a useful cross-check.
Methods are provided for real scalar and vector valued functions.
WWW: https://cran.r-project.org/web/packages/numDeriv/
Remove expired ports:
2016-09-30 math/why3-spark: Only useful for deprecated lang/spark
2016-09-30 lang/spark: Broken for more than 6 months
2016-09-30 math/alt-ergo-spark: Only useful for deprecate lang/spark
2016-09-30 security/nessus-libnasl: Abandoned, consider using OpenVAS
2016-09-30 security/nessus: Abandoned, consider using OpenVAS
2016-09-30 security/nessus-libraries: Abandoned, consider using OpenVAS
2016-09-30 security/nessus-plugins: Abandoned, consider using OpenVAS
Density, distribution function, quantile function, random generation
and expected value function for the truncated normal distribution
with mean equal to 'mean' and standard deviation equal to 'sd'.
WWW: http://cran.r-project.org/web/packages/truncnorm/
PR: 213091
Submitted by: pfg@
- Add new port: math/R-cran-influenceR
influenceR: Software Tools to Quantify Structural Importance of
Nodes in a Network
Provides functionality to compute various node centrality measures
on networks. Included are functions to compute betweenness centrality
(by utilizing Madduri and Bader's SNAP library), implementations
of Burt's constraint and effective network size (ENS) metrics,
Borgatti's algorithm to identify key players, and Valente's bridging
metric. On Unix systems, the betweenness, Key Players, and bridging
implementations are parallelized with OpenMP, which may run faster
on systems which have OpenMP configured.
WWW: https://cran.r-project.org/web/packages/influenceR/
- Add new port: math/R-cran-mcmc
Simulates continuous distributions of random vectors using Markov
chain Monte Carlo (MCMC). Users specify the distribution by an R
function that evaluates the log unnormalized density. Algorithms
are random walk Metropolis algorithm (function metrop), simulated
tempering (function temper), and morphometric random walk Metropolis
(Johnson and Geyer, Annals of Statistics, 2012, function morph.metrop),
which achieves geometric ergodicity by change of variable.
WWW: https://cran.r-project.org/web/packages/mcmc/
New port: math/cadabra2
Cadabra is a symbolic computer algebra system (CAS) designed
specifically for the solution of problems encountered in field
theory. It has extensive functionality for tensor computer algebra,
tensor polynomial simplification including multi-term symmetries,
fermions and anti-commuting variables, Clifford algebras and Fierz
transformations, component computations, implicit coordinate
dependence, multiple index types and many more. The input format
is a subset of TeX.
WWW: http://cadabra.science/
PR: 210476
Submitted by: Yuri Victorovich <yuri@rawbw.com>
math/py-pysparse: add new port
PR: 210595
Submitted by: yuri@rawbw.com
PySparse extends the Python interpreter by a set of sparse matrix
types holding double precision values. PySparse also includes modules
that implement:
- iterative methods for solving linear systems of equations
- a set of standard preconditioners
- an interface to a direct solver for sparse linear systems of
equations (SuperLU)
- a Jacobi-Davidson eigenvalue solver for the symmetric, generalised
matrix eigenvalue problem (JDSYM)
https://github.com/PythonOptimizers/pysparse
Remove expired ports without open PRs:
2016-07-04 security/openpgpsdk: Broken for more than 6 months
2016-07-04 security/radiusniff: Broken for more than 6 months
2016-07-04 security/pear-Auth_OpenID: Broken for more than 6 months
2016-07-04 security/sshit: Broken for more than 6 months
2016-07-04 security/ifd-slb_rf60: Broken for more than 6 months
2016-07-04 security/rainbowcrack: Broken for more than 6 months
2016-07-04 security/vlog: Broken for more than 6 months
2016-07-04 security/cryptstring: Broken for more than 6 months
2016-07-04 x11/libdnd: Broken for more than 6 months
2016-07-04 x11/xlupe: Broken for more than 6 months
2016-07-04 x11/xco: Broken for more than 6 months
2016-07-04 x11/xclick: Broken for more than 6 months
2016-07-04 devel/ocfpcsc: Broken for more than 6 months
2016-07-04 devel/dits: Broken for more than 6 months
2016-07-04 devel/ruby-cache: Broken for more than 6 months
2016-07-04 devel/rapidsvn: Broken for more than 6 months
2016-07-04 devel/svnkit: Broken for more than 6 months
2016-07-04 devel/py-EnthoughtBase: Broken for more than 6 months
2016-07-04 devel/cl-uffi: Broken for more than 6 months
2016-07-04 devel/ruby-event-loop: Broken for more than 6 months
2016-07-04 devel/libqxt: Broken for more than 6 months
2016-07-04 devel/dasm: Broken for more than 6 months
2016-07-04 devel/libopendaap: Broken for more than 6 months
2016-07-04 devel/cl-uffi-sbcl: Depends on expiring devel/cl-uffi
2016-07-04 devel/cvs2p4: Broken for more than 6 months
2016-07-04 devel/bufferpool: Broken for more than 6 months
2016-07-04 devel/ifd-test: Broken for more than 6 months
2016-07-04 devel/eric4: Broken for more than 6 months
2016-07-04 devel/uclmmbase: Broken for more than 6 months
2016-07-04 devel/obfuscatejs: Broken for more than 6 months
2016-07-04 devel/oniguruma: Broken for more than 6 months
2016-07-04 devel/libbnr: Broken for more than 6 months
2016-07-04 devel/c4: Broken for more than 6 months
2016-07-04 devel/memcheck: Broken for more than 6 months
2016-07-04 devel/liblcfg: Broken for more than 6 months
2016-07-04 devel/omake: Broken for more than 6 months
2016-07-04 devel/svndelta: Broken for more than 6 months
2016-07-04 devel/papp: Broken for more than 6 months
2016-07-04 devel/mk: Broken for more than 6 months
2016-07-04 devel/avltree: Broken for more than 6 months
2016-07-04 devel/cbind: Broken for more than 6 months
2016-07-04 devel/tclgetopts: Broken for more than 6 months
2016-07-04 devel/antlrworks: Broken for more than 6 months
2016-07-04 devel/acme: Broken for more than 6 months
2016-07-04 devel/libopensync022: Broken for more than 6 months
2016-07-04 archivers/epkg: Broken for more than 6 months
2016-07-04 print/enscriptfonts: Broken for more than 6 months
2016-07-04 print/mup: Broken for more than 6 months
2016-07-04 lang/lua-mode.el: Broken for more than 6 months
2016-07-04 lang/s9fes: Broken for more than 6 months
2016-07-04 lang/alisp: Broken for more than 6 months
2016-07-04 lang/intel2gas: Broken for more than 6 months
2016-07-04 lang/stalin: Broken for more than 6 months
2016-07-04 french/eric4: Depends on expiring devel/eric4
2016-07-04 textproc/exslt: Broken for more than 6 months
2016-07-04 textproc/xt: Broken for more than 6 months
2016-07-04 textproc/ssddiff: Broken for more than 6 months
2016-07-04 textproc/xslint: Broken for more than 6 months
2016-07-04 textproc/cbedic: Broken for more than 6 months
2016-07-04 textproc/tralics: Broken for more than 6 months
2016-07-04 textproc/docbookide.el: Broken for more than 6 months
2016-07-04 textproc/glpi-plugins-AdditionalReports: Broken for more than 6
months
2016-07-04 textproc/tdhkit: Broken for more than 6 months
2016-07-04 textproc/p5-Groonga-API: Broken for more than 6 months
2016-07-04 textproc/glpi-plugins-DataInjection: Broken for more than 6 months
2016-07-04 dns/ldnsm: Broken for more than 6 months
2016-07-04 japanese/guesswork-classic: Broken for more than 6 months
2016-07-04 japanese/texinfo: Broken for more than 6 months
2016-07-04 japanese/jyuroku: Broken for more than 6 months
2016-07-04 japanese/mtools: Broken for more than 6 months
2016-07-04 palm/pdbar: Broken for more than 6 months
2016-07-04 graphics/gplot: Broken for more than 6 months
2016-07-04 graphics/white_dune: Broken for more than 6 months
2016-07-04 graphics/whirlgif: Broken for more than 6 months
2016-07-04 graphics/libaux: Broken for more than 6 months
2016-07-04 graphics/import-pictures: Broken for more than 6 months
2016-07-04 math/xgobi: Broken for more than 6 months
2016-07-04 math/fricas: Broken for more than 6 months
2016-07-04 math/dcdflib: Broken for more than 6 months
2016-07-04 math/libneural: Broken for more than 6 months
2016-07-04 math/open-axiom: Broken for more than 6 months
2016-07-04 irc/nefarious: Broken for more than 6 months
2016-07-04 irc/slirc: Broken for more than 6 months
2016-07-04 irc/ratbox-respond: Broken for more than 6 months
2016-07-04 irc/qwebirc: Broken for more than 6 months
2016-07-04 biology/platon: Broken for more than 6 months
2016-07-04 news/slnr: Broken for more than 6 months
2016-07-04 science/jmol: Broken for more than 6 months
2016-07-04 net/nstxd: Broken for more than 6 months
2016-07-04 net/sprinkle: Broken for more than 6 months
2016-07-04 editors/ssam: Broken for more than 6 months
2016-07-04 editors/fb: Broken for more than 6 months
2016-07-04 misc/quotes: Broken for more than 6 months
2016-07-04 misc/boxquote.el: Broken for more than 6 months
2016-07-04 misc/pypanda: Broken for more than 6 months
2016-07-04 misc/cuecat: Broken for more than 6 months
2016-07-04 deskutils/displaycalibrator: Broken for more than 6 months
2016-07-04 german/eric4: Depends on expiring devel/eric4
2016-07-04 multimedia/vic: Depends on expiring devel/uclmmbase
2016-07-04 multimedia/ggrab: Broken for more than 6 months
2016-07-04 emulators/dynamips: Broken for more than 6 months
2016-07-04 emulators/dynamips-devel: Broken for more than 6 months
2016-07-04 emulators/sim6811: Broken for more than 6 months
2016-07-04 emulators/minivmac: Broken for more than 6 months
2016-07-04 cad/qcad-partslib: Broken for more than 6 months
2016-07-04 comms/dump1090_mr: Broken for more than 6 months
2016-07-04 x11-fm/asfiles: Depends on expiring x11/libdnd
2016-07-04 x11-fonts/fonts-te: Broken for more than 6 months
2016-07-04 sysutils/rsyncmanager: Broken for more than 6 months
2016-07-04 sysutils/jfbterm: Broken for more than 6 months
2016-07-04 sysutils/daedalus: Broken for more than 6 months
2016-07-04 sysutils/pcfclock: Broken for more than 6 months
2016-07-04 sysutils/vlogger: Broken for more than 6 months
2016-07-04 sysutils/bontmia: Broken for more than 6 months
2016-07-04 mail/pop3gwd: Broken for more than 6 months
2016-07-04 mail/mailtray: Broken for more than 6 months
2016-07-04 mail/pflogstats: Broken for more than 6 months
2016-07-04 mail/exact: Broken for more than 6 months
2016-07-04 mail/wmpop3: Broken for more than 6 months
2016-07-04 mail/qmail-conf: Broken for more than 6 months
2016-07-04 mail/gld: Broken for more than 6 months
2016-07-04 mail/dsbl-testers: Broken for more than 6 months
2016-07-04 mail/vqregister: Broken for more than 6 months
2016-07-04 mail/atmail: Broken for more than 6 months
2016-07-04 mail/ml: Broken for more than 6 months
2016-07-04 net-im/icb: Broken for more than 6 months
2016-07-04 net-im/cicquin: Broken for more than 6 months
2016-07-04 net-im/pidgin-manualsize: Broken for more than 6 months
2016-07-04 net-im/pidgin-rhythmbox: Broken for more than 6 months
2016-07-04 russian/eric4: Depends on expiring devel/eric4
2016-07-04 russian/fortune-bashorgru: Broken for more than 6 months
2016-07-04 www/xpi-clearfields: Broken for more than 6 months
2016-07-04 www/pecl-varnish: Broken for more than 6 months
2016-07-04 www/py-requests-oauth-hook: Broken for more than 6 months
2016-07-04 www/hudson: Broken for more than 6 months
2016-07-04 www/xpi-mldonkey: Broken for more than 6 months
2016-07-04 www/xpi-cookiesafe: Broken for more than 6 months
2016-07-04 www/trac-mastertickets: Broken for more than 6 months
2016-07-04 www/dotclear: Broken for more than 6 months
2016-07-04 www/ruby-wgettsv: Broken for more than 6 months
2016-07-04 www/wwwstat: Broken for more than 6 months
2016-07-04 www/xpi-prism: Broken for more than 6 months
2016-07-04 www/xpi-fasterfox: Broken for more than 6 months
2016-07-04 www/siteframe: Broken for more than 6 months
2016-07-04 www/py-urljr: Broken for more than 6 months
2016-07-04 www/reviewboard: Broken for more than 6 months
2016-07-04 www/xpi-tabletools: Broken for more than 6 months
2016-07-04 www/wikindx: Broken for more than 6 months
2016-07-04 www/typolight: Broken for more than 6 months
2016-07-04 www/varnish-libvmod-header: Broken for more than 6 months
2016-07-04 www/xpi-gbrain: Broken for more than 6 months
2016-07-04 www/trac-robotstxt: Broken for more than 6 months
2016-07-04 www/simplog: Broken for more than 6 months
2016-07-04 www/chtml: Broken for more than 6 months
2016-07-04 databases/postgresql_autodoc: Broken for more than 6 months
2016-07-04 databases/oracle_odbc_driver: Broken for more than 6 months
2016-07-04 databases/mysql-xql: Broken for more than 6 months
2016-07-04 databases/mysql-udf-sys: Broken for more than 6 months
2016-07-04 games/lucidlife: Broken for more than 6 months
2016-07-04 games/gma: Broken for more than 6 months
2016-07-04 games/smiley: Broken for more than 6 months
2016-07-04 games/noegnud-littlehack: Broken for more than 6 months
2016-07-04 games/sdlquake2: Broken for more than 6 months
2016-07-04 games/daimonin: Depends on expiring games/daimonin-music
2016-07-04 games/noegnud-nethack: Broken for more than 6 months
2016-07-04 games/xbomber: Broken for more than 6 months
2016-07-04 games/xwelltris: Broken for more than 6 months
2016-07-04 games/ftjava: Broken for more than 6 months
2016-07-04 games/daimonin-music: Broken for more than 6 months
2016-07-04 games/gno3dtet: Broken for more than 6 months
2016-07-04 games/qtv: Broken for more than 6 months
2016-07-04 games/xwordpy: Broken for more than 6 months
2016-07-04 games/netris: Broken for more than 6 months
2016-07-04 games/rt2-demo: Broken for more than 6 months
2016-07-04 games/noegnud-addons: Broken for more than 6 months
2016-07-04 games/noegnud-nethack-deet: Broken for more than 6 months
2016-07-04 games/live-f1: Broken for more than 6 months
2016-07-04 games/xonix: Broken for more than 6 months
2016-07-04 games/fgkicker: Broken for more than 6 months
2016-07-04 games/tank: Depends on expiring graphics/libaux
2016-07-04 games/linux-nwserver: Broken for more than 6 months
2016-07-04 games/quake2-zaero: Broken for more than 6 months
2016-07-04 games/pyching: Broken for more than 6 months
2016-07-04 games/thevalley: Broken for more than 6 months
2016-07-04 games/xroads: Broken for more than 6 months
2016-07-04 games/fxsudoku: Broken for more than 6 months
2016-07-04 games/sudoku: Broken for more than 6 months
2016-07-04 games/kmancala: Broken for more than 6 months
2016-07-04 games/plonx: Broken for more than 6 months
2016-07-04 games/wmminichess: Broken for more than 6 months
2016-07-04 games/noegnud-slashem: Broken for more than 6 months
2016-07-04 games/latrine: Broken for more than 6 months
2016-07-04 games/pysycache-themes: Broken for more than 6 months
2016-07-04 games/nibbles: Broken for more than 6 months
2016-07-04 games/hlstatsx: Broken for more than 6 months
2016-07-04 audio/streamtuner: Broken for more than 6 months
2016-07-04 audio/mangler: Broken for more than 6 months
2016-07-04 audio/hawkvoice: Broken for more than 6 months
2016-07-04 audio/alac: Broken for more than 6 months
2016-07-04 x11-wm/e-module-mpdule: Broken for more than 6 months
2016-07-04 x11-wm/e-module-tclock: Broken for more than 6 months
2016-07-04 x11-wm/musca: Broken for more than 6 months
2016-07-04 x11-wm/e-module-places: Broken for more than 6 months
2016-07-04 x11-wm/e-module-forecasts: Broken for more than 6 months
2016-07-04 x11-wm/e-module-net: Broken for more than 6 months
2016-07-04 x11-wm/e-module-penguins: Broken for more than 6 months
2016-07-04 ftp/fget: Broken for more than 6 months
2016-07-04 net-mgmt/netmond: Broken for more than 6 months
2016-07-04 net-mgmt/ipfm: Broken for more than 6 months
Deep Learning library for Python. Convnets, recurrent neural networks, and
more. Runs on Theano and TensorFlow.
WWW: http://keras.io/
PR: 210119
Submitted by: Neel Chauhan <neel@neelc.org>
C-coded Python extension module that supports multiple-precision arithmetic.
In addition to supporting GMP or MPIR for multiple-precision integer and
rational arithmetic, gmpy2 adds support for the MPFR (correctly rounded real
floating-point arithmetic) and MPC (correctly rounded complex floating-point
arithmetic) libraries.
WWW: https://pypi.python.org/pypi/gmpy2
WWW: https://github.com/aleaxit/gmpy/releases
PR: 210127
Submitted by: yuri@rawbw.com
intspan is a set subclass that conveniently stores sets of integers.
Sets can be created from and displayed as integer spans such as
1-3,14,29,92-97 rather than exhaustive member listings.
WWW: https://pypi.python.org/pypi/intspan/
- Add new port: math/R-cran-Rmpfr
Arithmetic (via S4 classes and methods) for arbitrary precision
floating point numbers, including transcendental ("special")
functions. To this end, Rmpfr interfaces to the LGPL'ed MPFR (Multiple
Precision Floating-Point Reliable) Library which itself is based
on the GMP (GNU Multiple Precision) Library.
WWW: https://cran.r-project.org/web/packages/Rmpfr/
Submitted by: Jukka A. Ukkonen <jau_AT_iki_DOT_fi> (via private e-mail)
- Add new port: math/R-cran-gmp
Multiple Precision Arithmetic (big integers and rationals, prime
number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
WWW: https://cran.r-project.org/web/packages/gmp/
Summary statistics, two-sample tests, rank tests, generalised linear models,
cumulative link models, Cox models, loglinear models, and general maximum
pseudolikelihood estimation for multistage stratified, cluster-sampled,
unequally weighted survey samples. Variances by Taylor series linearisation
or replicate weights. Post-stratification, calibration, and raking. Two-phase
subsampling designs. Graphics. PPS sampling without replacement. Principal
components, factor analysis.
WWW: http://r-survey.r-forge.r-project.org/survey/
- New port math/octave-forge-zeromq.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is zeromq.
ZeroMQ bindings for GNU Octave.
Add math/sound-of-sorting:
This program demonstrates the working principles of some 20 sorting
algorithms and is very easy to use. Select the algorithm, the speed
of the visualisation and whether you want to get sound output (that
reflects the values being moved and is characteristic for each kind
of algorithm).
Approved by: antoine (mentor)
Remove PHP 5.4 from the Ports Tree, it expired upstream in 2015-Q3 and the
ports expired last month.
Adjust Mk/bsd.php.mk
Reviewed by: antoine, marino
Approved by: portmgr (antoine)
Differential Revision: https://reviews.freebsd.org/D5278
- New port math/octave-forge-tisean.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
- New port math/octave-forge-sparsersb.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This port uses math/librsb, which is quite difficult to install. Therefore
this port will not be installed as part of the math/octave-forge meta-port.
Remove expired ports:
2015-12-30 www/ocsigen: Broken for more than 6 months
2015-12-30 devel/monodevelop-database: Broken for more than 6 months
2015-12-30 lang/cduce: Broken for more than 6 months
2015-12-30 science/hdf-java: Broken for more than 6 months
2015-12-30 math/p5-Math-Geometry-Planar-GPC-Polygon: Broken for more than 6
months
2015-12-30 www/eliom: Depends on broken and expiring www/ocsigen
2015-12-30 audio/py-fastaudio: Broken for more than 6 months
2015-12-30 devel/jgoodies-common: Broken for more than 6 months
2015-12-30 graphics/pinta: Broken for more than 6 months
2015-12-30 games/kanatest: Broken for more than 6 months
2015-12-30 editors/bless: Broken for more than 6 months
2015-12-30 security/burpsuite: Broken for more than 6 months
MatchIt selects matched samples of the the original treated and
control groups with similar covariate distributions - can be used
to match exactly on covariates, to match on propensity scores, or
perform a variety of other matching procedures.
WWW: http://gking.harvard.edu/matchit
Generalized estimating equations solver for parameters in
mean, scale, and correlation structures, through mean link,
scale link, and correlation link. Can also handle clustered
categorical responses.
WWW: https://cran.r-project.org/web/packages/geepack/
assertthat is an extension to stopifnot() that makes it easy to
declare the pre and post conditions that you code should satisfy,
while also producing friendly error messages so that your users
know what they've done wrong.
WWW: https://cran.r-project.org/web/packages/assertthat/
A tool that "multiply imputes" missing data in a single cross-section
(such as a survey), from a time series (like variables collected for
each year in a country), or from a time-series-cross-sectional data set
(such as collected by years for each of several countries).
WWW: http://gking.harvard.edu/amelia
Move math/why3-gpl => math/why3-spark
There are two reasons to rename this port.
1) Upstream never liked it and requested -spark be the suffix instead
2) An ongoing attempt to fix lang/spark may result in a number of slave
ports with a -spark suffix, so this keeps up consistency as all of
these ports only exist to support that port.
Functions for Maximum Likelihood (ML) estimation and non-linear
optimization, and related tools. It includes a unified way to
call different optimizers, and classes and methods to handle the
results from the ML viewpoint. It also includes a number of
convenience tools for testing and developing your own models.
WWW: http://www.maxlik.org/
An implementation of about 6 major classes of statistical regression
models.At the heart of it are the vector generalized linear and
additive model (VGLM/VGAM) classes, and the book "Vector Generalized
Linear and Additive Models: With an Implementation in R" (Yee, 2015)
gives details of the statistical framework and VGAM package. Currently
only fixed-effects models are implemented, i.e., no random-effects models.
WWW: https://www.stat.auckland.ac.nz/~yee/VGAM
- Add new port: math/R-cran-quantreg
Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation
penalized) models for conditional quantiles of a univariate response
and several methods for handling censored survival data. Portfolio
selection methods based on expected shortfall risk are also included.
WWW: https://cran.r-project.org/web/packages/quantreg/
- Add new port: math/R-cran-SparseM
Some basic linear algebra functionality for sparse matrices is
provided: including Cholesky decomposition and backsolving as well
as standard R subsetting and Kronecker products.
WWW: https://cran.r-project.org/web/packages/SparseM/
- Add new port: math/R-cran-pbkrtest
Test in linear mixed effects models. Attention is on linear mixed
effects models as implemented in the lme4 package. The package
implements a parametric bootstrap test. The package implements a
Kenward-Roger modification of F-tests.
WWW: https://cran.r-project.org/web/packages/pbkrtest/
- Add new port: math/R-cran-lme4
Fit linear and generalized linear mixed-effects models. The models
and their components are represented using S4 classes and methods.
The core computational algorithms are implemented using the Eigen
C++ library for numerical linear algebra and RcppEigen "glue".
WWW: https://github.com/lme4/lme4/
- Add new port: math/R-cran-nloptr
nloptr is an R interface to NLopt. NLopt is a free/open-source
library for nonlinear optimization, providing a common interface
for a number of different free optimization routines available
online as well as original implementations of various other algorithms.
WWW: https://cran.r-project.org/web/packages/nloptr/
Remove expired ports:
2015-10-31 audio/cmus-post.fm: Broken for more than 6 months
2015-10-31 devel/libphish: Broken for more than 6 months
2015-10-31 devel/rubygem-debugger: This port is for Ruby 1.9 only. Upstream
stopped maintenance.
2015-10-31 games/linux-ningpo-demo: Broken for more than 6 months
2015-10-30 graphics/gdal-grass: Superseded by gdal-2.0.0
2015-10-31 graphics/picviz: Broken for more than 6 months
2015-10-31 irc/weechat-devel: far behind stable irc/weechat (use it instead)
2015-10-31 mail/cucipop: Broken for more than 6 months
2015-10-31 math/rkward-kde4: Depends on deprecated math/R-cran-car
2015-10-31 multimedia/streamanalyze: Broken for more than 6 months
2015-10-31 net-mgmt/collectd: Please move to collectd5 - collect4 is not
developed/patched
2015-10-31 sysutils/sdd: Broken for more than 6 months
2015-10-31 sysutils/xfce4-minicmd-plugin: Broken for more than 6 months
2015-10-31 www/linux-libgtkembedmoz: Broken for more than 6 months
2015-10-31 www/py-feedfinder: Broken for more than 6 months
2015-10-31 www/py-openssl-proxy: Broken for more than 6 months
2015-10-31 www/py-webware: Broken for more than 6 months
2015-10-31 www/py-webware-component: Depends on deprecated www/py-webware
2015-10-31 x11-fonts/code2001: Broken for more than 6 months
2015-10-31 x11-wm/e-module-diskio: Broken for more than 7 months
Z3 is a high-performance theorem prover developed
at Microsoft Research.
WWW: https://github.com/Z3Prover/z3
PR: 202136
Submitted by: 6yearold@gmail.com
Update Mesa port to 10.6.6 and add Clover.
Add beignet 1.1.0.
Add clinfo, clblas, clfft and clrng.
The major change is that all Mesa ports are now configured the same way.
This fixes several problems and enables new features. The details
are described in this blog post:
http://blogs.freebsdish.org/graphics/2015/03/18/unifying-mesa-ports-configure/
The second important change is the OpenCL support. Mesa's
implementation, Clover, is enabled as well as Beignet. Clover
targets all Gallium drivers, only Radeon GPUs in our case. Beignet
is for Intel GPUs starting with Ivy Bridge. Thanks to Johannes
Dieterich, O. Hartman, and Koop Mast for their work on OpenCL! As a
bonus, there are several OpenCL-based math ports added (clblas,
(Only the first 15 lines of the commit message are shown above )
Number of commits found: 1875 (showing only 100 on this page)
