20:25 sunpoet 

Add p5-Math-Prime-Util 0.71

Math::Prime::Util is a module for number theory in Perl. This includes prime
sieving, primality tests, primality proofs, integer factoring, counts / bounds /
approximations for primes, nth primes, and twin primes, random prime generation,
and much more.

WWW: https://metacpan.org/release/Math-Prime-Util

 

20:06 jmd 

new port: math/libpgmath

This adds the compiler-callable math intrinsics library libpgmath. It is the
math library of the flang compiler with support for vector operations.

Patches were in large part adapted from the OpenBSD port.

Reviewed by:	zeising (mentor), mat
Approved by:	zeising (mentor)
Obtained from:	Brian Callahan (bcallah@openbsd.org) with adaptations
Differential Revision:	https://reviews.freebsd.org/D17034

 

19:31 jmd 

new port: math/sleef

SLEEF is the SIMD Library for Evaluating Elementary Functions, vectorized libm
and DFT. It provides a vectorabi interface for vectorized libm.

Reviewed by:	zeising (mentor), mat
Approved by:	zeising (mentor)
Differential Revision:	https://reviews.freebsd.org/D17045

 

07:19 yuri 

New port: math/py-chaospy: Toolbox for performing uncertainty quantification

 

00:38 yuri 

New port: math/mkl-dnn: Intel(R) Math Kernel Library for Deep Neural Networks

 

15:39 yuri 

New port: math/py-rapi: Minimal R API for Python

 

14:55 yuri 

math/rpy2: Update 2.7.8 -> 2.9.4; Move to math/py-rpy2

Port changes:
* Add LICENSE_FILE
* Update dependencies
* Support for python-2 is dropped
* Update WWW to https

 

03:34 wen 

Package DoE.base creates full factorial experimental designs and designs
based on orthogonal arrays for (industrial) experiments. Additionally, it
provides utility functions for the class design, which is also used by
other packages for designed experiments.

WWW: https://CRAN.R-project.org/package=DoE.base

PR:		220062
Submitted by:	pfg@

 

02:48 wen 

Additive partitions of integers. Enumerates the partitions, unequal partitions,
and restricted partitions of an integer; the three corresponding partition
functions are also given. Set partitions are now included.

WWW: https://cran.r-project.org/web/packages/partitions/

 

02:25 wen 

polynom is a collection of functions to implement a class for univariate
polynomial manipulations.

WWW: https://cran.r-project.org/web/packages/polynom/

 

14:11 wen 

Provides number-theoretic functions for factorization, prime numbers,
twin primes, primitive roots, modular logarithm and inverses, extended
GCD, Farey series and continuous fractions. Includes Legendre and Jacobi
symbols, some divisor functions, Euler's Phi function, etc.

WWW: https://cran.r-project.org/web/packages/numbers/

 

22:03 yuri 

New port: math/elpa: Eigenvalue soLver for Petaflop Applications

 

12:06 rene 

Remove expired ports:
2018-08-20 net/openmq: Broken for more than 5 months
2018-08-20 net/coda6_server: Broken for more than 5 months
2018-08-20 net/ceph-devel: Broken for more than 5 months
2018-08-20 java/jgrapht: Broken for more than 5 months
2018-08-20 mail/mutt14: mutt 1.4.x has been out of support for 10+ years use
mail/mutt
2018-08-20 www/pydio: Broken for more than 5 months
2018-08-20 security/fastd-devel: Broken for more than 5 months
2018-08-20 security/fastd: Broken for more than 5 months
2018-08-20 devel/bhyve-vm-goagent: Broken for more than 5 months
2018-08-20 devel/cherivis-devel: Depends on broken and expiring cheritrace-devel
2018-08-20 devel/cheritrace-devel: Broken for more than 5 months
2018-08-20 devel/javolution: Broken for more than 5 months
2018-08-20 devel/bisoncpp: Depends on broken and expiring libbobcat
2018-08-20 databases/php5-pdo_cassandra: Broken for more than 5 months
2018-08-20 games/crafty-open-large: Broken for more than 5 months
2018-08-20 games/crafty-open-enormous: Broken for more than 5 months
2018-08-20 games/crafty-open-medium: Broken for more than 5 months
2018-08-20 math/jakarta-commons-math: Broken for more than 5 months
2018-08-20 math/hfst: Broken for more than 5 months
2018-08-20 math/octave-forge-communications: Broken for more than 5 months
2018-08-20 lang/v8-devel: Broken for more than 5 months
2018-08-20 sysutils/rubygem-fluentd010: Broken for more than 5 months

 

18:21 yuri 

New port: math/blazeiterative: Set of iterative linear system solvers for use
with the Blaze library

 

18:00 yuri 

New port: math/blaze: C++ math library for dense and sparse arithmetic

 

12:26 mat 

Regular sorting of categories Makefiles.

Sponsored by:	Absolight

 

23:33 yuri 

New port: math/py-spot: Python binding for 'Spot', the library for omega
automata manipulation

 

23:30 yuri 

New port: math/spot: Library for omega automata manipulation and model checking

 

05:05 yuri 

New port: math/zegrapher: Software for plotting mathematical objects

 

20:17 yuri 

math/py-z3: Rename back to math/py-z3-solver to match it on PyPI website

z3 is a different project on PyPI.

Reported by:	koobs

 

13:15 sunpoet 

Add p5-Statistics-CaseResampling 0.15

The purpose of this (XS) module is to calculate the median (or in principle also
other statistics) with confidence intervals on a sample. To do that, it uses a
technique called bootstrapping. In a nutshell, it resamples the sample a lot of
times and for each resample, it calculates the median. From the distribution of
medians, it then calculates the confidence limits.

In order to implement the confidence limit calculation, various other functions
had to be implemented efficiently (both algorithmically efficient and done in
C). These functions may be useful in their own right and are thus exposed to
Perl. Most notably, this exposes a median (and general selection) algorithm that
works in linear time as opposed to the trivial implementation that requires
O(n*log(n)).

WWW: https://metacpan.org/release/Statistics-CaseResampling

 

19:14 yuri 

math/py-z3-solver: Rename to math/py-z3 to have a more intuitive name

Reported by:	arrowd

 

21:03 yuri 

math/z3: Fix the python binding to work for all python versions

The python binding is removed from math/z3 and placed into a separate
port math/mpy-z3-solver that builds for all python versions.

While here, remove the unnecessary CONFLICTS statement.

PR:		229937
Approved by:	portmgr

 

05:58 yuri 

New port: math/lean: Theorem prover

 

09:00 yuri 

New port: math/py-libpoly: Python binding for libpoly

 

08:30 yuri 

New port: math/libpoly: C library for manipulating polynomial

 

08:11 yuri 

New port: math/yices: SMT solver

 

19:03 yuri 

New port: math/vtk8: Visualization toolkit (repocopy of math/vtk6 with
modifications)

Changes against math/vtk6:
* Use DISTVERSION
* Update COMMENT
* Add to USES
* Remove the SHARED option: all libraries should be shared, no need for the
option to do otherwise
* Remove the PYTHON option: python binding should be a separate port
* Modernize the port: use helpers instead of .if/.endif
* Use autoplist: too many files with too complex dependencies on options
* Update USE_QT to include missing parts

 

15:03 pi 

New port: math/singular

Singular is a computer algebra system for polynomial computations,
with special emphasis on commutative and non-commutative algebra,
algebraic geometry, and singularity theory.

WWW: https://www.singular.uni-kl.de/

Submitted by:	yamadam@summitsystem.co.jp

 

15:20 rene 

Remove expired ports:
2018-06-30 net/rubygem-omniauth-twitter12: Obsoleted by update of www/gitlab.
Please use net/rubygem-omniauth-twitter instead.
2018-06-30 net/rubygem-gitaly-proto088: Obsoleted by update of www/gitlab.
Please use net/rubygem-gitaly-proto instead.
2018-06-30 net/rubygem-octokit46: Obsoleted by update of www/gitlab. Please use
net/rubygem-octokit instead.
2018-06-30 net/rubygem-fog-google0: Obsoleted by update of www/gitlab. Please
use net/rubygem-fog-google instead.
2018-06-30 net/rubygem-fog-aws1: Obsoleted by update of www/gitlab. Please use
net/rubygem-fog-aws instead.
2018-06-30 textproc/rubygem-asciidoctor-plantuml007: Obsoleted by update of
www/gitlab. Please use textproc/rubygem-asciidoctor-plantuml instead.
2018-03-19 graphics/mitsuba: Broken for more than 6 months
2018-05-31 mail/p5-Net-SMTP-SSL: Deprecated by upstream, use Net::SMTP instead
2018-06-30 www/rubygem-kubeclient22: Obsoleted by update of www/gitlab. Please
use www/rubygem-kubeclient instead.
2018-06-30 security/rubygem-doorkeeper42: Obsoleted by update of www/gitlab.
Please use security/rubygem-doorkeeper instead.
2018-06-30 security/rubygem-net-ssh41: Obsoleted by update of www/gitlab. Please
use security/rubygem-net-ssh instead.
2018-06-30 security/rubygem-omniauth-saml17: Obsoleted by update of www/gitlab.
Please use security/rubygem-omniauth-saml instead.
2018-06-30 security/rubygem-doorkeeper-openid_connect12: Obsoleted by update of
www/gitlab. Please use security/rubygem-doorkeeper-openid_connect instead.
2018-06-30 security/rubygem-attr_encrypted30: Obsoleted by update of www/gitlab.
Please use security/rubygem-attr_encrypted instead.
2018-06-30 security/rubygem-omniauth14: Obsoleted by update of www/gitlab.
Please use security/rubygem-omniauth instead.
2018-06-30 devel/rubygem-flipper011: Obsoleted by update of www/gitlab. Please
use devel/rubygem-flipper instead.
2018-06-30 devel/rubygem-ruby-prof016: Obsoleted by update of www/gitlab. Please
use devel/rubygem-ruby-prof instead.
2018-06-30 devel/rubygem-recursive-open-struct10: Obsoleted by update of
www/rubygem-kubeclient. Please use devel/rubygem-recursive-open-struct instead
2018-06-30 devel/rubygem-flipper-active_support_cache_store011: Obsoleted by
update of www/gitlab. Please use
devel/rubygem-flipper-active_support_cache_store instead.
2018-06-30 devel/rubygem-gettext_i18n_rails_js12: Obsoleted by update of
www/gitlab. Please use devel/rubygem-gettext_i18n_rails_js instead.
2018-02-02 devel/phpunit: No longer maintained upstream
2018-06-30 devel/rubygem-recursive-open-struct100: Obsoleted by update of
www/gitlab. Please use devel/rubygem-recursive-open-struct instead.
2018-06-30 databases/rubygem-flipper-active_record011: Obsoleted by update of
www/gitlab. Please use databases/rubygem-flipper-active_record instead.
2018-06-06 databases/mongodb34-rocks: Broken for more than 6 months
2018-07-01 math/freemat: Complex, unmaintained software with obsolete
dependencies

 

08:33 yuri 

Re-add port: math/fricas: Advanced computer algebra system

It was removed in r418057.

 

09:00 yuri 

New port: math/py-slepc4py: SLEPc for Python

 

08:36 yuri 

New port: math/slepc: Scalable Library for Eigenvalue Problem Computations

 

11:06 pi 

New port: math/cvc4

An efficient open-source automatic theorem prover for satisfiability modulo
theories (SMT) problems. It can be used to prove the validity (or, dually, the
satisfiability) of first-order formulas in a large number of built-in logical
theories and their combination.

WWW: https://cvc4.cs.stanford.edu/web/

PR:		227702
Submitted by:	Greg V <greg@unrelenting.technology>

 

02:59 yuri 

New port: math/py-spectral: Spectral Python (SPy) is a Python module for
hyperspectral image processing

 

08:03 tota 

- Add new port: math/R-cran-pls

  Multivariate regression methods Partial Least Squares Regression
  (PLSR), Principal Component Regression (PCR) and Canonical Powered
  Partial Least Squares (CPPLS).

  WWW: https://cran.r-project.org/web/packages/pls/

 

03:06 yuri 

New port: math/py-pyFFTW: Pythonic wrapper around FFTW, the FFT library

 

20:07 yuri 

New port: math/py-permutation: Permutations of finitely many positive integers

 

04:38 yuri 

New port: math/py-simhash: Python implementation of simhash algorithm

 

11:06 tijl 

Remove math/clipper, duplicate of graphics/polyclipping.

 

16:20 yuri 

New port: math/py-petsc4py: PETSc for Python

 

04:56 rene 

Remove expired ports:
2018-06-07 graphics/libkface: No longer maintained upstream
2018-06-07 math/scilab-toolbox-sivp: Cannot build with newer opencv

 

15:51 yuri 

New port: math/ecos: Lightweight conic solver for second-order cone programming

 

10:44 dbn 

math/R-cran-carData: Companion to Applied Regression Data Sets

Generated by:	portcran (0.1.8)

 

03:25 vanilla 

Add py-secp256k1 0.13.2, FFI bindings to libsecp256k1.

PR:		228529
Submitted by:	Waitman Gobble <waitman@waitman.net>

 

21:30 yuri 

New port: math/py-PyMetis: Python wrapper for the Metis graph partititioning
software

 

11:10 yuri 

New port: math/petiga: Framework for High Performance Isogeometric Analysis

 

09:48 yuri 

New port: math/py-igakit: Low-level routines for manipulations of NURBS
geometries

 

07:47 yuri 

New port: math/py-scikit-umfpack: Python interface to UMFPACK sparse direct
solver

 

16:43 yuri 

New port: math/py-GridDataFormats: Handle data on a grid: NumPy n-dimensional
arrays

 

05:46 yuri 

New port: math/xlife++: XLiFE++: eXtended Library of Finite Elements in C++

 

11:05 pi 

New port: math/p5-Math-ProvablePrime

This module returns a prime number of a specified bit length, using
Maurers algorithm.

WWW: http://search.cpan.org/dist/Math-ProvablePrime/

 

14:35 pi 

New port: math/mlpack

mlpack is a fast, flexible machine learning library, written in
C++, that aims to provide fast, extensible implementations of
cutting-edge machine learning algorithms. mlpack provides these
algorithms as simple command-line programs, Python bindings, and
C++ classes which can then be integrated into larger-scale machine
learning solutions.

WWW: http://www.mlpack.org/

PR:		228012
Submitted by:	robert.ayrapetyan@gmail.com

 

19:02 yuri 

New port: math/py-random2: Python 3 compatible Python 2 random module

PR:		227829
Submitted by:	Kai <freebsd_ports@k-worx.org>

 

19:53 rene 

Remove expired ports:
2018-04-24 net/google-daemon: Please use sysutils/py-google-compute-engine
instead
2018-04-24 net/google-startup-scripts: Please use
sysutils/py-google-compute-engine instead
2018-04-24 math/octave-forge-odepkg

 

19:48 rene 

Remove math/octave-forge-ocs, it depends on expired math/octave-forge-odepkg

 

06:03 yuri 

New port: math/py-piranha: Python binding for Piranha, the computer algebra
system

 

09:03 yuri 

New port: math/piranha: Piranha computer algebra system

 

07:33 yuri 

New port: math/spectra: C++ library for large scale eigenvalue problems

 

22:40 sunpoet 

Add rubygem-mathn 0.1.0

mathn serves to make mathematical operations more precise in Ruby and to
integrate other mathematical standard libraries.

Requiring mathn causes changes to the behavior (and even the types) of
operations on classes like Integer and it applies to the entire process, not
just the file or gem which includes mathn. Therefore, we recommend that instead
of requiring mathn, you instead explicitly specify rational values as desired.

Before ruby 2.5, mathn was part of the ruby standard library. It was deprecated
in ruby 2.2.0, and removed from ruby 2.5.0. In order to use the library with a
current version of ruby, you must install it as a gem.

WWW: https://github.com/ruby/mathn

 

11:22 thierry 

Upgrade math/rkward-kde4 to 0.7.0b and rename it to math/rkward-kde, because
it is built against KF5 components, and no more specific to KDE4.

Release notes at
https://rkward.kde.org/News#RKWard_0.7.0_-_Split_views.2C_based_on_KF5News

 

22:24 yuri 

New port: math/py-algopy: Algorithmic Differentiation (AD) and Taylor polynomial
approximations

 

08:07 yuri 

New port: math/py-pyipopt: Use ipopt (an optimization tool) via python

 

18:55 jwb 

math/intervaltree: Minimal C++ interval tree implementation

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15105

 

18:31 jwb 

math/multichoose: Generate multiset combinations (n multichoose k)

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15104

 

07:55 yuri 

New port: Coin-or Branch and Cut: mixed integer programming solver

 

07:22 yuri 

New port: math/cgl: Collection of cut generators for COIN-OR packages that use
cuts

 

08:12 yuri 

New port: math/py-PySCIPOpt: Python interface and modeling environment for SCIP

 

04:24 tota 

- Add new port: math/R-cran-uroot

  Seasonal unit roots and seasonal stability tests. P-values based
  on response surface regressions are available for both tests.
  P-values based on bootstrap are available for seasonal unit root
  tests. A parallel implementation of the bootstrap method requires
  a CUDA capable GPU with compute capability >= 3.0, otherwise a
  debugging version fully coded in R is used.

  WWW: https://cran.r-project.org/web/packages/uroot/

 

08:48 tota 

- Add new port: math/R-cran-SQUAREM

  Algorithms for accelerating the convergence of slow, monotone
  sequences from smooth, contraction mapping such as the EM algorithm.
  It can be used to accelerate any smooth, linearly convergent
  acceleration scheme. A tutorial style introduction to this package
  is available in a vignette on the CRAN download page or, when the
  package is loaded in an R session, with vignette("SQUAREM").

  WWW: https://cran.r-project.org/web/packages/SQUAREM/

 

05:53 tota 

- Add new port: math/R-cran-geometry

  Makes the qhull library (www.qhull.org) available in R, in a similar
  manner as in Octave and MATLAB. Qhull computes convex hulls, Delaunay
  triangulations, halfspace intersections about a point, Voronoi
  diagrams, furthest-site Delaunay triangulations, and furthest-site
  Voronoi diagrams. It runs in 2-d, 3-d, 4-d, and higher dimensions.
  It implements the Quickhull algorithm for computing the convex hull.
  Qhull does not support constrained Delaunay triangulations, or mesh
  generation of non-convex objects, but the package does include some
  R functions that allow for this. Currently the package only gives
  access to Delaunay triangulation and convex hull computation.

  WWW: https://cran.r-project.org/web/packages/geometry/

 

05:25 tota 

- Add new port: math/R-cran-magic

  A collection of efficient, vectorized algorithms for the creation
  and investigation of magic squares and hypercubes, including a
  variety of functions for the manipulation and analysis of arbitrarily
  dimensioned arrays. The package includes methods for creating normal
  magic squares of any order greater than 2. The ultimate intention
  is for the package to be a computerized embodiment all magic square
  knowledge, including direct numerical verification of properties
  of magic squares (such as recent results on the determinant of
  odd-ordered semimagic squares). Some antimagic functionality is
  included. The package also serves as a rebuttal to the often-heard
  comment "I thought R was just for statistics".

  WWW: https://cran.r-project.org/web/packages/magic/

 

01:57 stephen 

- Resurrect math/octave-forge-dicom.
- Update to 0.2.1.

 

18:13 tcberner 

New port: KDE Applications math/

* math/analitza
* math/cantor
* math/kalgebra
* math/kbruch
* math/kcalc
* math/kig
* math/kmplot
* math/rocs

This is the current version of KDE Applications <foo>.
Note that users of KDE SC4 should stick with <foo>-kde4.

 

23:14 yuri 

New port: math/antic: Algebraic Number Theory In C

 

09:36 rene 

Remove expired ports:
2018-03-31 math/abacus: Unmaintained and has a broken shared library
2018-03-31 audio/muse: Unmaintained upstream, crashes at runtime
2018-03-31 net/paris-traceroute: Legacy paris-traceroute is not supported
anymore. Use net/scamper instead
2018-04-01 net-im/cjc: Depends on expired net-im/py-xmpp
2018-02-28 net-im/py-pyxmpp: Obsoleted in favor of PyXMPP2

 

07:36 tota 

- Add new port: math/R-cran-spData

  Diverse spatial datasets for demonstrating, benchmarking and teaching
  spatial data analysis. It includes R data of class sf (defined by
  the package 'sf'), Spatial ('sp'), and nb ('spdep'). Unlike other
  spatial data packages such as 'rnaturalearth' and 'maps', it also
  contains data stored in a range of file formats including GeoJSON,
  ESRI Shapefile and GeoPackage. Some of the datasets are designed
  to illustrate specific analysis techniques. cycle_hire and
  cycle_hire_osm, for example, is designed to illustrate point pattern
  analysis techniques.

  WWW: https://cran.r-project.org/web/packages/spData/

 

21:54 yuri 

New port: math/mppp: Multiprecision for modern C++

tests and benchmarks depend on a not yet committed bug#227102 (math/mpfr update)

 

18:49 yuri 

New port: math/py-pynleq2: Python binding for NLEQ2 algorithm's fortran
implementation

 

06:24 yuri 

New port: math/py-pyodesys: Straightforward numerical integration of ODE systems
from Python

 

05:50 yuri 

New port: math/py-pyneqsys: Solver of symbolically defined systems of non-linear
equations

 

05:32 yuri 

New port: math/py-cyipopt: Cython interface for the interior point optimizer
IPOPT

 

02:52 yuri 

New port: math/py-levmar: Binding to levmar library (Levenberg-Marquardt
optimization algorithm)

 

00:10 yuri 

New port: math/py-sym: Unified wrapper for symbolic manipulation libraries in
Python

 

08:23 yuri 

New port: math/py-Pyomo: Python Optimization Modeling Objects

 

06:24 yuri 

New port: math/py-pysym: Prototype package for symbolic manipulation

 

06:48 yuri 

New port: math/arb: C library for arbitrary-precision interval arithmetic

 

01:13 yuri 

New port: math/flint2: Fast library for number theory

 

23:45 yuri 

New port: math/py-symcxx: Minimal symbolic manipulation python package written
in C++

 

22:25 yuri 

New port: math/py-Diofant: Python library for symbolic mathematics

 

09:18 yuri 

New port: math/g2o: General framework for graph optimization

Differential Revision:	https://reviews.freebsd.org/D13610

 

07:18 yuri 

New port: math/py-cvxopt: Python software for convex optimization

 

17:58 yuri 

New port: math/py-pymc3: Probabilistic programming in Python

 

08:16 yuri 

New port: math/py-uncertainties: Calculations with uncertainties on the
quantities involved

 

20:32 sunpoet 

Move math/py-gsl to math/py-pygsl

- Remove DIST_SUBDIR
- Allow concurrent installation (USE_PYTHON=concurrent)
- Do not silence installation messages
- Take maintainership

 

08:56 yuri 

New port: math/xtensor: Multi-dimensional arrays with broadcasting and lazy
computing

 

08:39 yuri 

New port: math/mathgl: Library for high-quality scientific data visualization

Approved by:	tcberner (mentor, implicit)
Differential Revision:	https://reviews.freebsd.org/D12887

 

07:05 yuri 

New port: math/py-seaborn: Statistical data visualization

PR:		226441
Submitted by:	Shane <FreeBSD@ShaneWare.Biz>
Approved by:	tcberner (mentor, implicit)

 

05:28 yuri 

New port: math/py-pandas-datareader: Data readers previously found in Pandas

PR:		226440
Submitted by:	Shane <FreeBSD@ShaneWare.Biz>
Approved by:	tcberner (mentor, implicit)

 

19:10 rene 

Remove expired ports:
2018-03-01 devel/dotconf++: No upstream, not depend on in the ports tree
2018-03-01 emulators/gnuboy: Latest version is 1.0.5, older version does not
fetch
2018-03-01 games/adgali: Mastersite disappeared
2018-03-01 games/tuxpuck: Mastersite disappeared
2018-03-01 japanese/migemo-emacs: Unmaintained
2018-03-01 math/clarence: Mastersite disappeared
2018-03-01 devel/cstringbuffer: Abandonware, no more upstream
2018-03-01 deskutils/charmap: Mastersite disappeared
2018-03-01 devel/afay: Abandonware, not used in the ports tree
2018-03-01 devel/alabastra: Abandonware, not used in the ports tree
2018-03-01 devel/adime: Abandonware, not used in the ports tree
2018-03-01 devel/boaconstructor: Abandonware, does not work with recent
python/wxPython
2018-03-01 audio/amp: No more upstream
2018-03-01 devel/alf: Abandonware, unused in the ports tree