*/*: Update WWW to use HTTPS for sourceforge.net projects

Homepage link is permanent redirected to its HTTPS counterpart

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

math/atlas: build full lapack

Some symbols had been eliminated with the previous release.

PR:		268422
Reported by:	alt2600 (at) icloud.com

math/atlas: upgrade to 3.10.3

The development iof ATLAS seems stalled, but some people still use it:
upgrade it to the latest stable version, to support some more platforms.

Changelog available from
<https://sourceforge.net/projects/math-atlas/files/Stable/3.10.3/ChangeLog/download>.

Next step: resurrect atlas-devel and upgrade it to the latest "unstable
release", 3.11.41, dated 2018-10-05…

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov

*/*: Remove redundant '-[0-9]*' from CONFLICTS

The conflict checks compare the patterns first against the package
names without version (as reported by "pkg query "%n"), then - if
there was no match - agsinst the full package names including the
version (as reported by "pkg query "%n-%v").

Many CONFLICTS definitions used patterns like "bash-[0-9]*" to filter
for the bash package in any version. But that pattern is functionally
identical with just "bash".

Approved by:	portmgr (blanket)

math/atlas: unbreak after math/lapack + various fixes

The latest upgrade of math/lapack broke ATLAS, due to the lack of the
post-target, but anyways it was broken in many others ways:

- gmake is required (the fixes ifdef / #ifdef are not sufficient)

- -fPIC is needed everywhere

- fix EXTRA_FFLAGS

- remove a conflict with atlas-devel.

PR:		257122
Reported by:	alt2600 (at) icloud.com
MFH:		2021Q3

Remove # $FreeBSD$ from Makefiles.

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

math/atlas: Fix build by removing empty directories

It was installing some empty directories under DATADIR which PORTDATA=* doesn't
handle.

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

math/atlas: Add PKGNAMESUFFIX to prevent the package name conflict with
devel/atlas

devel/atlas produces the package Atlas-0.5.2_2. When it is installed, 'make
install'
in math/atlas failed without an error message. This is probably a bug in
'pkg-static'.
'pkg add atlas-3.8.4_13,1.txz' complained about the package name conflict.

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight

Simplify things: always build both shared and static libs.
Some ports (py-scipy for instance) have indirect deps on ATLAS (via py-numpy)
and require specific (static) version to work.

math category: Remove $PTHREAD_LIBS

Note that math/PDL did not pass stage-QA before, so it was fixed.

approved by:	PTHREAD blanket

Update "BSD" license in math category

Cleanup plist

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

math/atlas: Fix OPTIONS handling, add log control option

Add an option to the menu to control whether the tuning info and build
logs are installed.  install these files uncompressed plain text instead
of compressed tarballs

PR:		192823
Submitted by:	Don Lewis

Stage math/atlas and reset maintainer

PR:		192744
Submitted by:	Don Lewis

Repair instances, almost all courtesy of bf ;-), of spaces
and/or tabs before the =. This made doing regular expressions
on the ports tree really difficult.

Approved by:	portmgr (not really, but touches unstaged ports)

Fix some non default LIB_DEPENDS

With hat:	portmgr

Convert all :U to :tu and :L to :tl

Since FreeBSD 8.4 and FreeBSD 9.1 make(1) do support :tu and :tl as a
replacement for :U and :L (which has been marked as deprecated)

bmake which is the default on FreeBSD 10+ only support by default
:tu/:tl a hack has been added at the time to support :U and :L to ease
migration. This hack is now not necessary anymore

Note that this makes the ports tree incompatible with make(1) from
FreeBSD 8.3 or earlier

With hat:	portmgr

Fixup for USES=fortran conversion.  These ports require USE_GCC=yes
because they depend on gcc specific optimisation flags.

While here use USES=tar:bzip2.

PR:		ports/187501
Submitted by:	Christoph Moench-Tegeder <cmt@burggraben.net>

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

Add NO_STAGE all over the place in preparation for the staging support (cat:
math)

Convert to new options framework

fix compiler runtime library path after recent changes to bsd.gcc.mk

Prodded by:	gerald
Feature safe:	yes

add some CONFLICTS [1]; minor clean-up

Reported by:    S.-M. Silber [1]

restore the explicit pointer bitwidth configure argument, to prevent
misconfiguration on some machines

PR:             162686
Submitted by:   truckman (different patch)

make a small build adjustment after the recent math/lapack changes

Update to 3.8.4 before the 3.10 release; clean up (substantially
reduce build times, introduce options, drop unneeded dependencies,
and make linking with ATLAS shared libraries easier)

Thanks to maho and A. Shterenlikht for review and testing, and to
mm, T.  Ludwig, skreuzer, and E. Lemos de Sa for reminders or related
submissions

PR:             117923, 139169, 155650, 159876

Tell portscout to look for stable releases only,
using the upstream convention

Assume maintainership: the former maintainer
is busy

Approved by:    maho

- Get Rid MD5 support

Add conflict line.

Submitted by:   "b. f." <bf1783@googlemail.com>

Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr

- Switch SourceForge ports to the new File Release System: categories starting
with M

Update to 3.8.3.

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

Update to 3.8.2.

Submitted by:    Kengo Ichiki <ichiki@ualberta.ca>
Slightly modified so that his patches fit ports policy.

* Fix bug listed in http://math-atlas.sourceforge.net/errata.html#RMAAT .
* Bump portrevision.
* Fix pkg-descr. Still do not pass portlint though.

Submitted by:   bf <bf2006a@yahoo.com>

Use MANUAL_PACKAGE_BUILD instead.

Update to 3.8.0.

Only verified on i386 and amd64 FreeBSD 7BETA.

Discussions with: bf <bf2006a@yahoo.com>, truckman
and Tijl Coosemans <tijl@ulyssis.org>.

PR: 118270 and 118271

Using new LAPACK 3.1.1 port (threfore BUMPPORTREVISION)
and unbreak.

Temporary marked as broken. Creating ATLAS'ed LAPACK part is now broken.

In ATLAS/INSTALL.txt it is said that gcc42 is superior to both gcc3 and gcc41
- and FreeBSD 7 current imported gcc42.

Spotted by:     Li-Lun \"Leland\" Wang" <llwang@infor.org>

Now we use USE_FORTRAN=yes to use FORTRAN compiler.

Fix errata listed at http://math-atlas.sourceforge.net/errata.html and
bump portrevision.

Submitted by:   bf <bf2006a@yahoo.com>

For test target, now we use GMAKE to MAKE. In some environment
GMAKE fails.

Remove CONFLICT line as elmer-mathlibs are deprecated by migration
to gfortran.

Atlas should not depend on GNU F77. Now
it doesn't expect existence of /usr/include/g2c.h

gmake is needed as a build dependency.

Approved by:    maho

Fix build with WITH_OPTIMIZED_FLAGS.

* Migrate to gfortran. but stock GCC is used.
* lapack/blas are compiled with gforntran, thus we build TEST section as well.

* Shared lib number has been bumped 1 to 2
* Bump port revision

* Migrate to gfortran.
* portlint.
* (option) Installing benchmark tests for real FLOPS.
* Bump portrevision.

Fix error when WITH_OPTIMIZED_FLAGS is specified.

PR:             100991
Submitted by:   Masayuki Takemura <ICG04984@nifty.com>

A better WITH_OPTIMIZED_FLAGS.

Remove USE_REINPLACE from ports starting with M

Register conflicts with math/elmer-mathlibs.

Submitted by:   thierry and
                Pedro F. Giffuni <giffunip@asme.org>

o cleanups
o faster build time; 4h45m19.23s for my Pentium M 1.6G.
  now static libs are build via knob, timing torerance patch is applied via
knob.

Submitted by:   many

SHA256ify

Approved by: krion@

Currently with "cpu I686_CPU" which is default,
kernel automatically enables SSE if it is available.
so remove messages which are not necessary.

Submitted by:    Darrien <darrien.l@gmail.com>

Add cputype of sempron; athlon type CPU

Submitted by: Pedro A M Vazquez <vazquez@iqm.unicamp.br>

Set NO_PACKAGE: atlas optimizes for the local machine, so a package is not
generally useful.

Reviewed by:    maho (maintainer)

Add two patches for stable builds.
o L1 cache size is not correctly detected having a bad clock
o in some case small number of tries in tuning doesn't meet convergence
  see FAQ http://math-atlas.sourceforge.net/errata.html#tol

At Kris's request, back out the MACHINE_ARCH spelling correction until
after 5.4-RELEASE.

Assist getting more ports working on AMD64 by obeying the
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.

Add a warning message

Suggested by: Rob D. <162144@gmail.com>

Reduce optimization level so that not get trapped
at infinite loop

Forced commit
Actually this report was submitted by mharo,
and eik kindly told me how to fix.

PR:     71095
Submitted by:   mharo

Avoid the use of != statements in ports Makefile

PR:             71095
Submitted by:   eik

Adding newline at the end of files
(lapack.h and blas.h)

Submitted by:   thierry@

Increase USE_GCC to 3.4 for those ports which compile with it.

Approved by:    portmgr

type -> arch

Pointy hat to: maho

ad hoc fix for 5-STABLE, having CPU
other than Pentium4 (Opteron, Pentium III,
Athlon... etc) this was due to recent change
in make(1)

Build fix for 5-STABLE

o Significantly performance loss by overriding several
  optimization flags...
o update to 3.7.8

1) correct the names of shared libs for threaded version
2) Some Pentium 4 series have more caches (not 512kB, but 1M ~ 2M)

Make portlint happy by replacing space to tab

PR:             65409
Submitted by:   trevor

make portlint happy

real fix for PR:64692

PR:             64692
Submitted by:   Kay Lehmann <kay_lehmann@web.de>

unbreak for 4-STABLE i386 and alpha

PR:     64692 (loosely depended on)
Submitted by:   Kay Lehmann <kay_lehmann@web.de> and kris via bento

Do not hardcord PICFLAG
Submitted by:   ru

Backout previous change of PICFLAG, since
behaviour of -fPIC and -fpic are different.
Here is the comment form obrien:

--
"-fpic" is a [minor?] optimization for machines that can handle it:

  -fpic
    Generate position-independent code (PIC) suitable for use in a shared
    library, if supported for the target machine. Such code accesses all
    constant addresses through a global offset table (GOT). The dynamic
    loader resolves the GOT entries when the program starts (the dynamic
    loader is not part of GCC; it is part of the operating system). If
    the GOT size for the linked executable exceeds a machine-specific
    maximum size, you get an error message from the linker indicating

-fPIC is appropreate on all architectures.

Submitted by: kris

Fix build on alpha 4-stable

Submitted by:   kris via bento

Update to 3.6.0