Port details |
- py-fastcluster Fast hierarchical clustering routines for R and Python
- 1.2.6 math
=0 Version of this port present on the latest quarterly branch. - Maintainer: sunpoet@FreeBSD.org
 - Port Added: 2013-12-18 11:12:51
- Last Update: 2022-07-20 14:22:24
- Commit Hash: f53eb28
- Also Listed In: python
- License: BSD2CLAUSE
- Description:
- This library provides Python functions for hierarchical clustering. It generates
hierarchical clusters from distance matrices or from vector data.
Part of this module is intended to replace the functions (linkage, single,
complete, average, weighted, centroid, median, ward) in the module
scipy.cluster.hierarchy with the same functionality but much faster algorithms.
Moreover, the function linkage_vector provides memory-efficient clustering for
vector data.
The interface is very similar to MATLAB's Statistics Toolbox API to make code
easier to port from MATLAB to Python/NumPy. The core implementation of this
library is in C++ for efficiency.
WWW: http://danifold.net/fastcluster.html
WWW: https://github.com/dmuellner/fastcluster
- SVNWeb : git : Homepage
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}fastcluster>0:math/py-fastcluster@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/math/py-fastcluster/ && make install clean
- To add the package, run one of these commands:
- pkg install math/py-fastcluster
- pkg install py39-fastcluster
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.NOTE: This is a Python port. Instead of py39-fastcluster listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-fastcluster
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1647264604
SHA256 (fastcluster-1.2.6.tar.gz) = aab886efa7b6bba7ac124f4498153d053e5a08b822d2254926b7206cdf5a8aa6
SIZE (fastcluster-1.2.6.tar.gz) = 173773
- Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-numpy>=0,1 : math/py-numpy@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-numpy>=1.9,1 : math/py-numpy@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- There are no ports dependent upon this port
- Configuration Options:
- No options to configure
- Options name:
- math_py-fastcluster
- USES:
- python:3.7+
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Commit History - (may be incomplete: see SVNWeb link above for full details) |
Date | By | Description |
20 Jul 2022 14:22:24 1.2.6 |
Tobias C. Berner (tcberner)  |
math: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Aaron Dalton <aaron@daltons.ca>
* Alessando Sagratini <ale_sagra@hotmail.com>
* Alex Dupre <ale@FreeBSD.org>
* Alexey Dokuchaev <danfe@FreeBSD.org>
* Amarendra Godbole <amarendra.godbole@gmail.com>
* Anders Nordby <anders@FreeBSD.org>
* Andreas Fehlner (fehlner@gmx.de)
* Andrew L. Neporada <andrew@chg.ru>
* Andrey <gugu@zoo.rambler.ru>
* Andrey Zakhvatov (Only the first 15 lines of the commit message are shown above ) |
25 Mar 2022 13:37:06 1.2.6 |
Po-Chuan Hsieh (sunpoet)  |
math/py-fastcluster: Update to 1.2.6
Changes: https://github.com/dmuellner/fastcluster/releases
https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt |
05 Nov 2021 19:14:17 1.2.4 |
Po-Chuan Hsieh (sunpoet)  |
math/py-fastcluster: Update USES=python
math/py-numpy requires Python 3.7+ |
21 Sep 2021 03:44:49 1.2.4 |
Po-Chuan Hsieh (sunpoet)  |
math/py-fastcluster: Update to 1.2.4
Changes: https://github.com/dmuellner/fastcluster/releases
https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt |
20 Jun 2021 20:46:21 1.2.3 |
Po-Chuan Hsieh (sunpoet)  |
math/py-fastcluster: Update to 1.2.3
Changes: https://github.com/dmuellner/fastcluster/releases
https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt |
18 Apr 2021 05:43:48 1.1.28 |
Po-Chuan Hsieh (sunpoet)  |
math/py-fastcluster: Remove PYNUMPY |
06 Apr 2021 14:31:07 1.1.28 |
Mathieu Arnold (mat)  |
Remove # $FreeBSD$ from Makefiles. |
06 Feb 2021 20:46:52
1.1.28 |
sunpoet  |
Update to 1.1.28
Changes: https://github.com/dmuellner/fastcluster/releases
https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt |
26 Jan 2021 17:28:57
1.1.27 |
sunpoet  |
Update to 1.1.27
Changes: https://github.com/dmuellner/fastcluster/releases
https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt |
24 Dec 2020 13:46:02
1.1.26 |
kai  |
Relax hardcoded paths to fix build with Python 3.8.7
Since r558913 Python 3.8 incorporates BPO-42604 [1] which changed the
shared libs naming scheme. This means "EXT_SUFFIX" is now derived from
SOABI and yields with Python 3.8 to ".cpython-38.so" instead of ".so".
The affected ports strip the libaries in the "post-install" target via
hardcoded path(s) and the build fails at the end because the new extension
is not expected at this place.
Remedy the issue by adding wildcards to these paths. This should also
prepare the ports for future Python releases, which will use the new shared
libs naming scheme.
[1] https://bugs.python.org/issue42604
PR: 252057
Reported by: John Kennedy
Reviewed by: fluffy, koobs
Approved by: koobs (python) |
24 Dec 2020 09:03:39
1.1.26 |
antoine  |
scipy 1.5.4 is only compatible with python 3.6+
Reported by: pkg-fallout |
01 Jan 2020 16:30:48
1.1.26 |
sunpoet  |
Update to 1.1.26
Changes: https://github.com/dmuellner/fastcluster/releases
https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt |
26 Jul 2019 20:46:57
1.1.25_2 |
gerald  |
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330 |
12 Dec 2018 01:35:36
1.1.25_1 |
gerald  |
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590 |
20 Jun 2018 17:05:44
1.1.25 |
mat  |
Use PY_FLAVOR for dependencies.
FLAVOR is the current port's flavor, it should not be used outside of
this scope.
Sponsored by: Absolight |
01 Jun 2018 22:47:24
1.1.25 |
sunpoet  |
Update to 1.1.25
Changes: https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt |
25 Apr 2018 16:42:38
1.1.24_1 |
amdmi3  |
Switch all pypi.python.org WWWs to a new PyPi home pypi.org where
they now redirect to anyway. All new urls checked to return 200,
I've fixed a couple of them in the process.
Approved by: portmgr blanket, mat |
10 Mar 2018 17:46:06
1.1.24_1 |
gerald  |
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079). |
25 Feb 2018 05:33:33
1.1.24 |
sunpoet  |
Update to 1.1.24
- Update COMMENT
- Add LICENSE_FILE
- Add missing OPTIONS_DEFINE=DOCS
- Strip shared library
- Convert to options target helper
- Add PyPI and GitHub repository to WWW
- Take maintainership
Changes: https://github.com/dmuellner/fastcluster
https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt |
24 Feb 2018 08:52:27
1.1.23 |
tcberner  |
Give xmj@'s ports back to the pool
PR: 226157
Submitted by: xmj |
30 Nov 2017 15:50:34
1.1.23  |
mat  |
Convert Python ports to FLAVORS.
Ports using USE_PYTHON=distutils are now flavored. They will
automatically get flavors (py27, py34, py35, py36) depending on what
versions they support.
There is also a USE_PYTHON=flavors for ports that do not use distutils
but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if
using distutils but flavors are not wanted.
A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
added to cope with Python ports that did not have the Python
PKGNAMEPREFIX but are flavored.
USES=python now also exports a PY_FLAVOR variable that contains the (Only the first 15 lines of the commit message are shown above ) |
03 Jun 2017 13:55:22
1.1.23 |
tcberner  |
Update to 1.1.23
PR: 219354
Submitted by: xmj
Approved by: xmj (maintainer) |
01 Feb 2017 11:31:45
1.1.21 |
amdmi3  |
- Update to 1.1.21
- Allow concurrent installs (fix docdir)
PR: 212213
Submitted by: xmj@FreeBSD.org
Approved by: maintainer timeout (johannes@perceivon.net, 6 weeks) |
23 Jun 2016 09:48:53
1.1.20 |
tz  |
Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner
requested.
This only affects "Created by" lines with one exception: devel/uclcmd. There the
maintainer is changed. This was overlooked in r416918.
Approved by: junovitch (mentor) |
15 Jun 2016 09:04:29
1.1.20 |
tz  |
Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net
PR: 210265
Submitted by: Johannes Jost Meixner (johannes@perceivon.net)
Approved by: pi (mentor) |
25 May 2016 16:54:31
1.1.20 |
pi  |
Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org
PR: 209746
Submitted by: xmj |
24 May 2016 00:50:47
1.1.20 |
amdmi3  |
- Update to 1.1.20
PR: 209623
Submitted by: xmj (maintainer) |
01 Apr 2016 14:16:20
1.1.13_2 |
mat  |
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.
With hat: portmgr
Sponsored by: Absolight |
21 Oct 2014 16:54:55
1.1.13_2 |
mva  |
- Convert ports of math/ to new USES=python
Approved by: portmgr (implicit) |
10 Sep 2014 20:50:37
1.1.13_2 |
gerald  |
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (-exp runs)
Approved by: portmgr (implicit) |
10 Mar 2014 20:55:22
1.1.13_1 |
gerald  |
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.
Part II, Bump PORTREVISIONs.
PR: 182136
Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by: bdrewery (two -exp runs) |
18 Dec 2013 11:12:40
1.1.13 |
wg  |
math/py-fastcluster: Python functions for hierarchical clustering
Fastcluster provides Python functions for hierarchical clustering. It generates
hierarchical clusters from distance matrices or from vector data.
Part of this module is intended to replace the functions
linkage, single, complete, average, weighted, centroid, median, ward
in the module scipy.cluster.hierarchy with the same functionality but much
faster algorithms. Moreover, the function 'linkage_vector' provides
memory-efficient clustering for vector data.
The interface is very similar to MATLAB's Statistics Toolbox API to make code
easier to port from MATLAB to Python/Numpy. The core implementation of this
library is in C++ for efficiency.
WWW: http://danifold.net/fastcluster.html
PR: ports/184931
Submitted by: Johannes Jost Meixner <xmj chaot.net> |