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Port details
py-fastcluster Fast hierarchical clustering routines for R and Python
1.2.6_1 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.2.6_1Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2013-12-18 11:12:51
Last Update: 2023-06-27 19:34:34
Commit Hash: 3d9a815
Also Listed In: python
License: BSD2CLAUSE
WWW:
http://danifold.net/fastcluster.html
https://github.com/dmuellner/fastcluster
Description:
This library provides Python functions for hierarchical clustering. It generates hierarchical clusters from distance matrices or from vector data. Part of this module is intended to replace the functions (linkage, single, complete, average, weighted, centroid, median, ward) in the module scipy.cluster.hierarchy with the same functionality but much faster algorithms. Moreover, the function linkage_vector provides memory-efficient clustering for vector data. The interface is very similar to MATLAB's Statistics Toolbox API to make code easier to port from MATLAB to Python/NumPy. The core implementation of this library is in C++ for efficiency.
HomepageHomepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}fastcluster>0:math/py-fastcluster@${PY_FLAVOR}
To install the port:
cd /usr/ports/math/py-fastcluster/ && make install clean
To add the package, run one of these commands:
  • pkg install math/py-fastcluster
  • pkg install py39-fastcluster
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-fastcluster listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-fastcluster
Package flavors (<flavor>: <package>)
  • py39: py39-fastcluster
distinfo:
TIMESTAMP = 1647264604 SHA256 (fastcluster-1.2.6.tar.gz) = aab886efa7b6bba7ac124f4498153d053e5a08b822d2254926b7206cdf5a8aa6 SIZE (fastcluster-1.2.6.tar.gz) = 173773

Packages (timestamps in pop-ups are UTC):
py39-fastcluster
ABIlatestquarterly
FreeBSD:13:aarch641.2.6_11.2.6_1
FreeBSD:13:amd641.2.6_11.2.6_1
FreeBSD:13:armv6--
FreeBSD:13:armv71.2.6_1-
FreeBSD:13:i3861.2.6_11.2.6_1
FreeBSD:13:powerpc--
FreeBSD:13:powerpc64-1.2.6_1
FreeBSD:13:powerpc64le--
FreeBSD:14:aarch641.2.6_11.2.6_1
FreeBSD:14:amd641.2.6_11.2.6_1
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3861.2.6_11.2.6_1
FreeBSD:14:powerpc--
FreeBSD:14:powerpc64-1.2.6_1
FreeBSD:14:powerpc64le--
FreeBSD:15:aarch641.2.6_1-
FreeBSD:15:amd641.2.6_1-
FreeBSD:15:armv71.2.6_1-
FreeBSD:15:powerpc--
FreeBSD:15:powerpc641.2.6_1-
FreeBSD:15:powerpc64le1.2.6_1-
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-numpy>=0,1 : math/py-numpy@py39
  2. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  3. python3.9 : lang/python39
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. py39-numpy>=1.9,1 : math/py-numpy@py39
  2. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  3. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
math_py-fastcluster
USES:
compiler python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/f/fastcluster/
  2. https://pypi.org/packages/source/f/fastcluster/
Collapse this list.

Number of commits found: 39

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.2.6_1
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
1.2.6_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
1.2.6
05 Apr 2023 17:30:44
commit hash: ef176396af8040d8f7ef14d2e714631968ebe264commit hash: ef176396af8040d8f7ef14d2e714631968ebe264commit hash: ef176396af8040d8f7ef14d2e714631968ebe264commit hash: ef176396af8040d8f7ef14d2e714631968ebe264 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
math/py-fastcluster: Update WWW and clean up pkg-descr
1.2.6
08 Feb 2023 20:17:09
commit hash: 278ced6f36e6b428c4f718bd8536a0b4884816e9commit hash: 278ced6f36e6b428c4f718bd8536a0b4884816e9commit hash: 278ced6f36e6b428c4f718bd8536a0b4884816e9commit hash: 278ced6f36e6b428c4f718bd8536a0b4884816e9 files touched by this commit
Piotr Kubaj (pkubaj) search for other commits by this committer
math/py-fastcluster: fix build on powerpc* with LLVM 14 by forcing 15

Assertion failed: ((CGF.CurFuncDecl == nullptr ||
CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) ||
isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior ==
llvm::fp::ebIgnore && NewRoundingBehavior ==
llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on
entire function"), function ConstructorHelper, file
/usr/local/poudriere/jails/main-powerpc64/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp,
line 163.
1.2.6
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.2.6
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.2.6
20 Jul 2022 14:22:24
commit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5da files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.2.6
25 Mar 2022 13:37:06
commit hash: 1256291848f01e76317fefe8086d1c06834c3126commit hash: 1256291848f01e76317fefe8086d1c06834c3126commit hash: 1256291848f01e76317fefe8086d1c06834c3126commit hash: 1256291848f01e76317fefe8086d1c06834c3126 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
math/py-fastcluster: Update to 1.2.6

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
1.2.4
05 Nov 2021 19:14:17
commit hash: 3fc96aa60fd6f1fdb185f83983bf2fd10b6ceb1ecommit hash: 3fc96aa60fd6f1fdb185f83983bf2fd10b6ceb1ecommit hash: 3fc96aa60fd6f1fdb185f83983bf2fd10b6ceb1ecommit hash: 3fc96aa60fd6f1fdb185f83983bf2fd10b6ceb1e files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
math/py-fastcluster: Update USES=python

math/py-numpy requires Python 3.7+
1.2.4
21 Sep 2021 03:44:49
commit hash: 165948b89e513dfdacc18bd313ca5ae862fe65edcommit hash: 165948b89e513dfdacc18bd313ca5ae862fe65edcommit hash: 165948b89e513dfdacc18bd313ca5ae862fe65edcommit hash: 165948b89e513dfdacc18bd313ca5ae862fe65ed files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
math/py-fastcluster: Update to 1.2.4

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
1.2.3
20 Jun 2021 20:46:21
commit hash: 33c6b6a9107ebd7eb4d395bd1aed6747b99761f9commit hash: 33c6b6a9107ebd7eb4d395bd1aed6747b99761f9commit hash: 33c6b6a9107ebd7eb4d395bd1aed6747b99761f9commit hash: 33c6b6a9107ebd7eb4d395bd1aed6747b99761f9 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
math/py-fastcluster: Update to 1.2.3

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
1.1.28
18 Apr 2021 05:43:48
commit hash: 36c342df1d8247d56429eea17638a879d2e604dccommit hash: 36c342df1d8247d56429eea17638a879d2e604dccommit hash: 36c342df1d8247d56429eea17638a879d2e604dccommit hash: 36c342df1d8247d56429eea17638a879d2e604dc files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
math/py-fastcluster: Remove PYNUMPY
1.1.28
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.1.28
06 Feb 2021 20:46:52
Revision:564286Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.1.28

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
1.1.27
26 Jan 2021 17:28:57
Revision:562817Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.1.27

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
1.1.26
24 Dec 2020 13:46:02
Revision:559094Original commit files touched by this commit
kai search for other commits by this committer
Relax hardcoded paths to fix build with Python 3.8.7

Since r558913 Python 3.8 incorporates BPO-42604 [1] which changed the
shared libs naming scheme.  This means "EXT_SUFFIX" is now derived from
SOABI and yields with Python 3.8 to ".cpython-38.so" instead of ".so".

The affected ports strip the libaries in the "post-install" target via
hardcoded path(s) and the build fails at the end because the new extension
is not expected at this place.

Remedy the issue by adding wildcards to these paths.  This should also
prepare the ports for future Python releases, which will use the new shared
libs naming scheme.

[1] https://bugs.python.org/issue42604

PR:		252057
Reported by:	John Kennedy
Reviewed by:	fluffy, koobs
Approved by:	koobs (python)
1.1.26
24 Dec 2020 09:03:39
Revision:559053Original commit files touched by this commit
antoine search for other commits by this committer
scipy 1.5.4 is only compatible with python 3.6+

Reported by:	pkg-fallout
1.1.26
01 Jan 2020 16:30:48
Revision:521731Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.1.26

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
1.1.25_2
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
1.1.25_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
1.1.25
20 Jun 2018 17:05:44
Revision:472884Original commit files touched by this commit
mat search for other commits by this committer
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
1.1.25
01 Jun 2018 22:47:24
Revision:471306Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.1.25

Changes:	https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
1.1.24_1
25 Apr 2018 16:42:38
Revision:468282Original commit files touched by this commit
amdmi3 search for other commits by this committer
Switch all pypi.python.org WWWs to a new PyPi home pypi.org where
they now redirect to anyway. All new urls checked to return 200,
I've fixed a couple of them in the process.

Approved by:	portmgr blanket, mat
1.1.24_1
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
1.1.24
25 Feb 2018 05:33:33
Revision:462923Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.1.24

- Update COMMENT
- Add LICENSE_FILE
- Add missing OPTIONS_DEFINE=DOCS
- Strip shared library
- Convert to options target helper
- Add PyPI and GitHub repository to WWW
- Take maintainership

Changes:	https://github.com/dmuellner/fastcluster
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
1.1.23
24 Feb 2018 08:52:27
Revision:462775Original commit files touched by this commit
tcberner search for other commits by this committer
Give xmj@'s ports back to the pool

PR:		226157
Submitted by:	xmj
1.1.23
30 Nov 2017 15:50:34
Revision:455210Original commit files touched by this commit Sanity Test Failure
mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.1.23
03 Jun 2017 13:55:22
Revision:442493Original commit files touched by this commit
tcberner search for other commits by this committer
Update to 1.1.23

PR:		219354
Submitted by:	xmj
Approved by:	xmj (maintainer)
1.1.21
01 Feb 2017 11:31:45
Revision:433001Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Update to 1.1.21
- Allow concurrent installs (fix docdir)

PR:		212213
Submitted by:	xmj@FreeBSD.org
Approved by:	maintainer timeout (johannes@perceivon.net, 6 weeks)
1.1.20
23 Jun 2016 09:48:53
Revision:417356Original commit files touched by this commit
tz search for other commits by this committer
Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner
requested.

This only affects "Created by" lines with one exception: devel/uclcmd. There the
maintainer is changed. This was overlooked in r416918.

Approved by: junovitch (mentor)
1.1.20
15 Jun 2016 09:04:29
Revision:416918Original commit files touched by this commit
tz search for other commits by this committer
Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net

PR:           210265
Submitted by: Johannes Jost Meixner (johannes@perceivon.net)
Approved by:  pi (mentor)
1.1.20
25 May 2016 16:54:31
Revision:415848Original commit files touched by this commit
pi search for other commits by this committer
Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org

PR:		209746
Submitted by:	xmj
1.1.20
24 May 2016 00:50:47
Revision:415751Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Update to 1.1.20

PR:		209623
Submitted by:	xmj (maintainer)
1.1.13_2
01 Apr 2016 14:16:20
Revision:412348Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight
1.1.13_2
21 Oct 2014 16:54:55
Revision:371328Original commit files touched by this commit
mva search for other commits by this committer
- Convert ports of math/ to new USES=python

Approved by:	portmgr (implicit)
1.1.13_2
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
1.1.13_1
10 Mar 2014 20:55:22
Revision:347809Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
1.1.13
18 Dec 2013 11:12:40
Revision:336815Original commit files touched by this commit
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math/py-fastcluster: Python functions for hierarchical clustering

Fastcluster provides Python functions for hierarchical clustering. It generates
hierarchical clusters from distance matrices or from vector data.

Part of this module is intended to replace the functions
    linkage, single, complete, average, weighted, centroid, median, ward
in the module scipy.cluster.hierarchy with the same functionality but much
faster algorithms. Moreover, the function 'linkage_vector' provides
memory-efficient clustering for vector data.

The interface is very similar to MATLAB's Statistics Toolbox API to make code
easier to port from MATLAB to Python/Numpy. The core implementation of this
library is in C++ for efficiency.

WWW: http://danifold.net/fastcluster.html

PR:		ports/184931
Submitted by:	Johannes Jost Meixner <xmj chaot.net>

Number of commits found: 39