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Port details
py-fastcluster Fast hierarchical clustering routines for R and Python
1.2.4 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.2.3Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2013-12-18 11:12:51
Last Update: 2021-09-21 03:44:49
Commit Hash: 165948b
Also Listed In: python
License: BSD2CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}fastcluster>0:math/py-fastcluster@${PY_FLAVOR}
To install the port: cd /usr/ports/math/py-fastcluster/ && make install clean
To add the package, run one of these commands:
  • pkg install math/py-fastcluster
  • pkg install py38-fastcluster
NOTE: This is a Python port. Instead of py38-fastcluster listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py38-fastcluster
Package flavors (<flavor>: <package>)
  • py38: py38-fastcluster
distinfo:
Packages (timestamps in pop-ups are UTC):
py27-fastcluster
ABIlatestquarterly
FreeBSD:11:aarch641.1.251.1.26
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch641.1.25-
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py36-fastcluster
ABIlatestquarterly
FreeBSD:11:aarch641.1.25-
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch641.1.25-
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py37-fastcluster
ABIlatestquarterly
FreeBSD:11:aarch64-1.1.26
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-1.1.28
FreeBSD:13:aarch641.1.26-
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc641.1.28-
 
py38-fastcluster
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd641.2.41.2.3
FreeBSD:11:armv6--
FreeBSD:11:i3861.2.41.2.3
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-1.2.4
FreeBSD:12:amd641.2.41.2.4
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3861.2.41.2.4
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-1.2.4
FreeBSD:13:amd641.2.41.2.4
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3861.2.41.2.4
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch641.2.4-
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py38-numpy>=0,1 : math/py-numpy@py38
  2. py38-setuptools>0 : devel/py-setuptools@py38
  3. python3.8 : lang/python38
Runtime dependencies:
  1. py38-numpy>=1.9,1 : math/py-numpy@py38
  2. py38-setuptools>0 : devel/py-setuptools@py38
  3. python3.8 : lang/python38
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/f/fastcluster/
  2. https://pypi.org/packages/source/f/fastcluster/
Collapse this list.

Number of commits found: 29

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
21 Sep 2021 03:44:49
 files touched by this commit commit hash:165948b89e513dfdacc18bd313ca5ae862fe65ed  1.2.4
sunpoet search for other commits by this committer
math/py-fastcluster: Update to 1.2.4

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
20 Jun 2021 20:46:21
 files touched by this commit commit hash:33c6b6a9107ebd7eb4d395bd1aed6747b99761f9  1.2.3
sunpoet search for other commits by this committer
math/py-fastcluster: Update to 1.2.3

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
18 Apr 2021 05:43:48
 files touched by this commit commit hash:36c342df1d8247d56429eea17638a879d2e604dc  1.1.28
sunpoet search for other commits by this committer
math/py-fastcluster: Remove PYNUMPY
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.1.28
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
06 Feb 2021 20:46:52
Original commit files touched by this commit Revision:564286  1.1.28
sunpoet search for other commits by this committer
Update to 1.1.28

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
26 Jan 2021 17:28:57
Original commit files touched by this commit Revision:562817  1.1.27
sunpoet search for other commits by this committer
Update to 1.1.27

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
24 Dec 2020 13:46:02
Original commit files touched by this commit Revision:559094  1.1.26
kai search for other commits by this committer
Relax hardcoded paths to fix build with Python 3.8.7

Since r558913 Python 3.8 incorporates BPO-42604 [1] which changed the
shared libs naming scheme.  This means "EXT_SUFFIX" is now derived from
SOABI and yields with Python 3.8 to ".cpython-38.so" instead of ".so".

The affected ports strip the libaries in the "post-install" target via
hardcoded path(s) and the build fails at the end because the new extension
is not expected at this place.

Remedy the issue by adding wildcards to these paths.  This should also
prepare the ports for future Python releases, which will use the new shared
libs naming scheme.

[1] https://bugs.python.org/issue42604

PR:		252057
Reported by:	John Kennedy
Reviewed by:	fluffy, koobs
Approved by:	koobs (python)
24 Dec 2020 09:03:39
Original commit files touched by this commit Revision:559053  1.1.26
antoine search for other commits by this committer
scipy 1.5.4 is only compatible with python 3.6+

Reported by:	pkg-fallout
01 Jan 2020 16:30:48
Original commit files touched by this commit Revision:521731  1.1.26
sunpoet search for other commits by this committer
Update to 1.1.26

Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  1.1.25_2
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  1.1.25_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
20 Jun 2018 17:05:44
Original commit files touched by this commit Revision:472884  1.1.25
mat search for other commits by this committer
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
01 Jun 2018 22:47:24
Original commit files touched by this commit Revision:471306  1.1.25
sunpoet search for other commits by this committer
Update to 1.1.25

Changes:	https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
25 Apr 2018 16:42:38
Original commit files touched by this commit Revision:468282  1.1.24_1
amdmi3 search for other commits by this committer
Switch all pypi.python.org WWWs to a new PyPi home pypi.org where
they now redirect to anyway. All new urls checked to return 200,
I've fixed a couple of them in the process.

Approved by:	portmgr blanket, mat
10 Mar 2018 17:46:06
Original commit files touched by this commit Revision:464084  1.1.24_1
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
25 Feb 2018 05:33:33
Original commit files touched by this commit Revision:462923  1.1.24
sunpoet search for other commits by this committer
Update to 1.1.24

- Update COMMENT
- Add LICENSE_FILE
- Add missing OPTIONS_DEFINE=DOCS
- Strip shared library
- Convert to options target helper
- Add PyPI and GitHub repository to WWW
- Take maintainership

Changes:	https://github.com/dmuellner/fastcluster
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
24 Feb 2018 08:52:27
Original commit files touched by this commit Revision:462775  1.1.23
tcberner search for other commits by this committer
Give xmj@'s ports back to the pool

PR:		226157
Submitted by:	xmj
30 Nov 2017 15:50:34
Original commit files touched by this commit Revision:455210  1.1.23  Sanity Test Failure
mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
03 Jun 2017 13:55:22
Original commit files touched by this commit Revision:442493  1.1.23
tcberner search for other commits by this committer
Update to 1.1.23

PR:		219354
Submitted by:	xmj
Approved by:	xmj (maintainer)
01 Feb 2017 11:31:45
Original commit files touched by this commit Revision:433001  1.1.21
amdmi3 search for other commits by this committer
- Update to 1.1.21
- Allow concurrent installs (fix docdir)

PR:		212213
Submitted by:	xmj@FreeBSD.org
Approved by:	maintainer timeout (johannes@perceivon.net, 6 weeks)
23 Jun 2016 09:48:53
Original commit files touched by this commit Revision:417356  1.1.20
tz search for other commits by this committer
Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner
requested.

This only affects "Created by" lines with one exception: devel/uclcmd. There the
maintainer is changed. This was overlooked in r416918.

Approved by: junovitch (mentor)
15 Jun 2016 09:04:29
Original commit files touched by this commit Revision:416918  1.1.20
tz search for other commits by this committer
Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net

PR:           210265
Submitted by: Johannes Jost Meixner (johannes@perceivon.net)
Approved by:  pi (mentor)
25 May 2016 16:54:31
Original commit files touched by this commit Revision:415848  1.1.20
pi search for other commits by this committer
Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org

PR:		209746
Submitted by:	xmj
24 May 2016 00:50:47
Original commit files touched by this commit Revision:415751  1.1.20
amdmi3 search for other commits by this committer
- Update to 1.1.20

PR:		209623
Submitted by:	xmj (maintainer)
01 Apr 2016 14:16:20
Original commit files touched by this commit Revision:412348  1.1.13_2
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight
21 Oct 2014 16:54:55
Original commit files touched by this commit Revision:371328  1.1.13_2
mva search for other commits by this committer
- Convert ports of math/ to new USES=python

Approved by:	portmgr (implicit)
10 Sep 2014 20:50:37
Original commit files touched by this commit Revision:367888  1.1.13_2
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
10 Mar 2014 20:55:22
Original commit files touched by this commit Revision:347809  1.1.13_1
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
18 Dec 2013 11:12:40
Original commit files touched by this commit Revision:336815  1.1.13
wg search for other commits by this committer
math/py-fastcluster: Python functions for hierarchical clustering

Fastcluster provides Python functions for hierarchical clustering. It generates
hierarchical clusters from distance matrices or from vector data.

Part of this module is intended to replace the functions
    linkage, single, complete, average, weighted, centroid, median, ward
in the module scipy.cluster.hierarchy with the same functionality but much
faster algorithms. Moreover, the function 'linkage_vector' provides
memory-efficient clustering for vector data.

The interface is very similar to MATLAB's Statistics Toolbox API to make code
easier to port from MATLAB to Python/Numpy. The core implementation of this
library is in C++ for efficiency.

WWW: http://danifold.net/fastcluster.html

PR:		ports/184931
Submitted by:	Johannes Jost Meixner <xmj chaot.net>

Number of commits found: 29