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Port details
py-fastcluster Fast hierarchical clustering routines for R and Python
1.1.25_2 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 1.1.25Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2013-12-18 11:12:51
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
Also Listed In: python
License: BSD2CLAUSE
Description:
SVNWeb : Homepage

There is no configure plist information for this port.

Dependency lines:
  • py36-fastcluster>0:math/py-fastcluster
To install the port: cd /usr/ports/math/py-fastcluster/ && make install clean
To add the package: pkg install py36-fastcluster
PKGNAME: py36-fastcluster
Package flavors (<flavor>: <package>)
  • py36: py36-fastcluster
  • py27: py27-fastcluster
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py36-numpy>0 : math/py-numpy@py36
  2. py36-setuptools>0 : devel/py-setuptools@py36
  3. python3.6 : lang/python36
Runtime dependencies:
  1. py36-numpy>0 : math/py-numpy@py36
  2. py36-scipy>=0 : science/py-scipy@py36
  3. py36-setuptools>0 : devel/py-setuptools@py36
  4. python3.6 : lang/python36
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://files.pythonhosted.org/packages/source/f/fastcluster/
  2. https://pypi.org/packages/source/f/fastcluster/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 20

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
26 Jul 2019 20:46:57
Original commit files touched by this commit  1.1.25_2
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
12 Dec 2018 01:35:36
Original commit files touched by this commit  1.1.25_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
20 Jun 2018 17:05:44
Original commit files touched by this commit  1.1.25
Revision:472884
mat search for other commits by this committer
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
01 Jun 2018 22:47:24
Original commit files touched by this commit  1.1.25
Revision:471306
sunpoet search for other commits by this committer
Update to 1.1.25

Changes:	https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
25 Apr 2018 16:42:38
Original commit files touched by this commit  1.1.24_1
Revision:468282
amdmi3 search for other commits by this committer
Switch all pypi.python.org WWWs to a new PyPi home pypi.org where
they now redirect to anyway. All new urls checked to return 200,
I've fixed a couple of them in the process.

Approved by:	portmgr blanket, mat
10 Mar 2018 17:46:06
Original commit files touched by this commit  1.1.24_1
Revision:464084
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
25 Feb 2018 05:33:33
Original commit files touched by this commit  1.1.24
Revision:462923
sunpoet search for other commits by this committer
Update to 1.1.24

- Update COMMENT
- Add LICENSE_FILE
- Add missing OPTIONS_DEFINE=DOCS
- Strip shared library
- Convert to options target helper
- Add PyPI and GitHub repository to WWW
- Take maintainership

Changes:	https://github.com/dmuellner/fastcluster
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
24 Feb 2018 08:52:27
Original commit files touched by this commit  1.1.23
Revision:462775
tcberner search for other commits by this committer
Give xmj@'s ports back to the pool

PR:		226157
Submitted by:	xmj
30 Nov 2017 15:50:34
Original commit files touched by this commit  1.1.23
Revision:455210  Sanity Test Failure
mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
03 Jun 2017 13:55:22
Original commit files touched by this commit  1.1.23
Revision:442493
tcberner search for other commits by this committer
Update to 1.1.23

PR:		219354
Submitted by:	xmj
Approved by:	xmj (maintainer)
01 Feb 2017 11:31:45
Original commit files touched by this commit  1.1.21
Revision:433001
amdmi3 search for other commits by this committer
- Update to 1.1.21
- Allow concurrent installs (fix docdir)

PR:		212213
Submitted by:	xmj@FreeBSD.org
Approved by:	maintainer timeout (johannes@perceivon.net, 6 weeks)
23 Jun 2016 09:48:53
Original commit files touched by this commit  1.1.20
Revision:417356
tz search for other commits by this committer
Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner
requested.

This only affects "Created by" lines with one exception: devel/uclcmd. There the
maintainer is changed. This was overlooked in r416918.

Approved by: junovitch (mentor)
15 Jun 2016 09:04:29
Original commit files touched by this commit  1.1.20
Revision:416918
tz search for other commits by this committer
Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net

PR:           210265
Submitted by: Johannes Jost Meixner (johannes@perceivon.net)
Approved by:  pi (mentor)
25 May 2016 16:54:31
Original commit files touched by this commit  1.1.20
Revision:415848
pi search for other commits by this committer
Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org

PR:		209746
Submitted by:	xmj
24 May 2016 00:50:47
Original commit files touched by this commit  1.1.20
Revision:415751
amdmi3 search for other commits by this committer
- Update to 1.1.20

PR:		209623
Submitted by:	xmj (maintainer)
01 Apr 2016 14:16:20
Original commit files touched by this commit  1.1.13_2
Revision:412348
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight
21 Oct 2014 16:54:55
Original commit files touched by this commit  1.1.13_2
Revision:371328
mva search for other commits by this committer
- Convert ports of math/ to new USES=python

Approved by:	portmgr (implicit)
10 Sep 2014 20:50:37
Original commit files touched by this commit  1.1.13_2
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
10 Mar 2014 20:55:22
Original commit files touched by this commit  1.1.13_1
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
18 Dec 2013 11:12:40
Original commit files touched by this commit  1.1.13
Revision:336815
wg search for other commits by this committer
math/py-fastcluster: Python functions for hierarchical clustering

Fastcluster provides Python functions for hierarchical clustering. It generates
hierarchical clusters from distance matrices or from vector data.

Part of this module is intended to replace the functions
    linkage, single, complete, average, weighted, centroid, median, ward
in the module scipy.cluster.hierarchy with the same functionality but much
faster algorithms. Moreover, the function 'linkage_vector' provides
memory-efficient clustering for vector data.

The interface is very similar to MATLAB's Statistics Toolbox API to make code
easier to port from MATLAB to Python/Numpy. The core implementation of this
library is in C++ for efficiency.

WWW: http://danifold.net/fastcluster.html

PR:		ports/184931
Submitted by:	Johannes Jost Meixner <xmj chaot.net>

Number of commits found: 20

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