ITK is an open-source software toolkit for performing registration and
segmentation. Segmentation is the process of identifying and classifying
data found in a digitally sampled representation. Typically the sampled
representation is an image acquired from such medical instrumentation as
CT or MRI scanners. Registration is the task of aligning or developing
correspondences between data. For example, in the medical environment,
a CT scan may be aligned with a MRI scan in order to combine the
information contained in both.
===> The following configuration options are available for InsightToolkit-5.3.0_10:
EXAMPLES=on: Build examples (very time consuming)
===> Use 'make config' to modify these settings
port moved here from science/InsightToolkit501 on 2026-08-04 REASON: Has expired: Fails to build, error: no template named 'binary_function' in namespace 'std'
port moved here from science/InsightToolkit521 on 2023-03-21 REASON: Retire InsightToolkit521: it was there only to support graphics/elastix
science/InsightToolkit: Fix build with CMake 3.29
Support for the Comeau compiler was removed. Upstream has since updated
it's copy of VNL, which doesn't require this patch.
PR: 278693
Approved by: portmgr (blanket)
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
science/hdf5: bump PORTREVISION of consumers
The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .
Reported by: VVD <vvd@unislabs.com>
science: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Andreas Fehlner <fehlner@gmx.de>
* Brad Huntting <huntting@glarp.com>
* Chao Shin <quakelee@cn.FreeBSD.org>
* Cheng-Lung Sung <clsung@FreeBSD.org>
* Chia-Hsing Yu <me@davidyu.org>
* Chris Rees <utisoft@gmail.com>
* David Naylor <dbn@FreeBSD.org>
* Dmitry Sivachenko <demon@FreeBSD.org>
* Ed Schouten <ed@FreeBSD.org>
* Eric Freeman <freebsdports@chillibear.com>
* Erik B Knudsen
(Only the first 15 lines of the commit message are shown above )
*/*: Replace science/szip with science/libaec
- Bump PORTREVISION of dependent ports for dependency change
szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.
PR: 228743, 246097, 250165
*/*: Fix ENOTIME: return my ports to the pool
Reset maintainership of my ports to ports@FreeBSD.org so others can
step in to help where I haven't been able to find the time.
- Upgrade math/eigen3 to 3.3.8;
- Add some dependencies which might be detected by Find_Package but not
registered;
- Bump PORTREVISION of consumers.
PR: 250833
Submitted by: /me
Approved by: tcberner@ (KDE / maintainer) + exp-run
Temporarily mark this as broken on powerpc64 until I can investigate
further.
The full error message is:
pkg-static: Unable to access file
/wrkdirs/usr/ports/science/InsightToolkit/work/stage/usr/local/include/ITK-5.0/compilers/ITK_COMPILER_INFO_Clang_CXX.h:No
such file or directory
I am taking this unusual step because this port takes 21 hours on the
build cluster just to get to this point.
Approved by: portmgr (tier-2 blanket)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine
This port currently doesn't build on GCC-based architectures, due to
not supporting GCC8. Make GCC8 use the same macros as the newest
supported version, GCC 7.3.
PR: 234056
Submitted by: Piotr Kubaj
Approved by: portmgr (tier-2 blanket)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
science/InsightToolkit: Modify patch to use ${CMAKE_DL_LIBS}
${CMAKE_DL_LIBS} expands to "" on FreeBSD where the dl functions are
included in the Standard C library (libc), but to "dl" on operating
systems where the dl functions are part of libdl.
This change to the patch does not result in a change in contents of the
resulting package.
Reported by: jbeich
Update the maintainer email address for the ports I
maintain to woodsb02@FreeBSD.org
Approved by: adamw (mentor)
Differential Revision: https://reviews.freebsd.org/D6278
Update to 4.9.0.
This update to the port also adds a lot of dependencies on system libraries
instead of using the versions bundled with ITK.
PR: 206977
Submitted by: Ben Woods <woodsb02@gmail.com> (maintainer)
- Add common code to support for cmake based ports.
- Update devel/cmake to 2.6.0 (also fix ports/123092)
- Use the new CMAKE build framework in all ports using cmake
Approved by: portmgr (pav)
ITK is an open-source software toolkit for performing registration and
segmentation. Segmentation is the process of identifying and classifying
data found in a digitally sampled representation. Typically the sampled
representation is an image acquired from such medical instrumentation as
CT or MRI scanners. Registration is the task of aligning or developing
correspondences between data. For example, in the medical environment,
a CT scan may be aligned with a MRI scan in order to combine the
information contained in both.
WWW: http://www.itk.org
Port maintainer: Jason W. Bacon
bacon@smithers.neuro.mcw.edu
PR: ports/95166
Submitted by: bacon at smithers.neuro.mcw.edu
