science/lammps: patch_2Jun2022 -> stable_23Jun2022

*/*: Replace science/szip with science/libaec

- Bump PORTREVISION of dependent ports for dependency change

szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.

PR:		228743, 246097, 250165

science/lammps: Update 24Mar2022 -> 2Jun2022

devel/cmake: Update to 3.23.0

Update to 3.23.0.
Fix pkg-plist: using the default share/man location

Release Notes:
  https://cmake.org/cmake/help/v3.23/release/3.23.html

PR:		262886
Exp-run by:	antoine

devel/kokkos: Update 3.5.00 -> 3.6.00

Reported by:	portscout

textproc/libxml2: bump all LIB_DEPENDS consumers

This is a separate commit to facilitate easier cherry-picking for
quarterly.

PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)

textproc/libxml2: bump all dependencies

This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246

science/lammps: Update patch_7Jan2022 -> patch_24Mar2022

science/lammps: Update 29Sep2021 -> 7Jan2022

science/lammps: Update patch_2Jul2021 -> stable_29Sep2021

Reported by:	upstream notification

science/lammps: Update 14May2021 -> 2Jul2021

Reported by:	GitHub release notification

science/lammps: Update 8Apr2021 -> 14May2021

Reported by:	GitHub release notification

science/plumed: Update 2.7.0 -> 2.7.1

Reported by:	portscout

science/lammps: Update 10Mar2021 -> 8Apr2021

Reported by:	GH release notification

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

Remove # $FreeBSD$ from Makefiles.

science/lammps: Update 10Feb2021 -> 10Mar2021

Reported by:	GH release notification

science/lammps: Update 24Dec2020 -> 10Feb2021

science/lammps: Update 30Nov2020 -> 24Dec2020

Reported by:	GitHub notification

devel/kokkos: Update 3.2.01 -> 3.3.00

science/lammps: The KIM option isn't broken any more after the latest update of
science/kim-api

- Upgrade math/eigen3 to 3.3.8;

- Add some dependencies which might be detected by Find_Package but not
registered;

- Bump PORTREVISION of consumers.

PR:		250833
Submitted by:	/me
Approved by:	tcberner@ (KDE / maintainer) + exp-run

science/lammps: Update 29Oct2020 -> 30Nov2020

Reported by:	upstream notification

science/lammps: Fix build broken by the latest kim-api update.

science/lammps: Update 22Oct2020 -> 29Oct2020

Reported by:	GitHub notification

science/lammps: Update 18Sep2020 -> 22Oct2020

Reported by:	GitHub notification

science/lammps: Update 24Aug2020 -> 18Sep2020

Reported by:	GitHub notification

science/lammps: Update 21Aug2020 -> 24Aug2020

Reported by:	GitHub notification

science/lammps: Update 21Jul2020 -> 21Aug2020

Reported by:	GitHub notification

science/lammps: Update 30Jun2020 -> 21Jul2020

Reported by:	GitHub release notification

science/lammps: Update 15Jun2020 -> 30Jun2020

Reported by:	GitHub notification

science/lammps: Update 2Jun2020 -> 15Jun2020

Reported by:	GitHub notification

science/lammps: Update 5May2020 -> 2Jun2020

Reported by:	GitHub notification

science/lammps: Enable exceptions

Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas

science/lammps: Update 15Apr2020 -> 5May2020

Reported by:	github release notification

science/lammps: Add the PLUMED option

Also:
* Change USER-LB to be available only for MPI=on
* Sort options alphabetically

science/lammps: Add the science/openkim-models dependency to the KIM option

science/lammps: Add the KIM option to enable the internal KIM package

Also add the C++11 compiler tag.

science/lammps: Add the VTK option enabling the internal VTK package

science/lammps: Remove OPTIONS_DEFINE_clang that doesn't work

According to Mk/bsd.options.mk, only ARCH can be used
(${OPTIONS_DEFINE_${ARCH}}).
OPTIONS_DEFINE_clang caused port options to malfunction.

science/lammps: Enable all packages that don't require dependencies, and
USER-H5MD that does require dependencies

science/lammps: Enable more internal packages; Remove grouped options from the
global context

cience/lammps: Add the option to enable the KOKKOS internal package; Add the
options group PACKAGES

science/lammps: Add internal packages that were off by default; Change to shared
libraries; Add GZIP_DESC

science/lammps: Fix plist when MPI=off; Add to CONFLICTS_BUILD

science/lammps: Update 19Mar2020 -> 15Apr2020

Reported by:	GitHub notification

- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
- Remove option for net/openmpi2 from science/pnetcdf (net/openmpi2 is
deprecated and will be removed)
- Fix science/gromacs plist when MPI option is enabled
- Bump PORTREVISION for all the consumers of net/openmpi

science/lammps: don't set -march=native

It breaks compilation on some architectures and runtime on others.

MFH:		2020Q2 (build fix blanket)

science/lammps: Update 3Mar2020 -> 19Mar2020

Reported by:	GitHub notification

Drop dependency on devel/openmp

- Drop if devel/llvm* was used as a substitute

Approved by:	yuri, rene (earlier version)
Differential Revision:	https://reviews.freebsd.org/D23020

science/lammps: Update 27Feb2020 -> 3Mar2020

Reported by:	GitHub notification

science/lammps: Update 18Feb2020 -> 27Feb2020

Reported by:	portscout

science/lammps: Update 4Feb2020 -> 18Feb2020

Reported by:	github notification

science/lammps: Update 24Jan2020 -> 4Feb2020

Reported by:	upstream notification

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

science/lammps: Update 20Nov2019 -> 24Jan2020

Reported by:	upstream notification

science/lammps: Fix the PORTSCOUT tag

science/lammps: fix build on GCC architectures

Don't enable OpenMP everywhere, it causes an error with GCC, reported on
https://github.com/lammps/lammps/pull/1483

This requires some hackery with ports not supporting options for specific
compilers.

OPENMP flag has removed option helpers due to them not being respected
otherwise.

PR:		241156
Approved by:	yuri (maintainer, earlier versior), tcberner (mentor, earlier
version)
Differential Revision:	https://reviews.freebsd.org/D21994

science/lammps: Update patch_30Oct2019 -> patch_20Nov2019

Reported by:	github notification

science/lammps: Update 19Sep2019 -> 30Oct2019

Reported by:	release notification

devel/openmp: update to 9.0.0

- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783

Changes:	http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI:		https://abi-laboratory.pro/tracker/timeline/llvm_openmp/

science/lammps: Update 7Aug2019 -> 19Sep2019

Reported by:	GitHub release notification

science/lammps: patch_6Aug2019 -> stable_7Aug2019

Reported by:	portscout

science/lammps: Update 2Aug2019 -> 6Aug2019

Reported by:	portscout

multimedia/ffmpeg: update to 4.2

Changes:	https://git.ffmpeg.org/gitweb/ffmpeg.git/blob/n4.2:/Changelog
ABI:		https://abi-laboratory.pro/tracker/timeline/ffmpeg/

science/lammps: Update 19Jul2019 -> 2Aug2019

Reported by:	portscout

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

science/lammps: Update patch_5Jun2019 -> patch_19Jul2019

PR fixing folder locations is backported.

Reported by:	GitHub release notification

Clean up LIB_DEPENDS

science/lammps: Add the PORTSCOUT=ignore line

science/lammps: Update 31May2019 -> 5Jun2019

Approved by:	portscout

science/lammps: Update 15May2019 -> 31May2019

Reported by:	GitHub release notification

science/lammps: Update patch_30Apr2019 -> patch_15May2019

Reported by:	github notification

devel/openmp: phase out

- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)

PR:		236907
Approved by:	bapt (maintainer)
Differential Revision:	https://reviews.freebsd.org/D19767

science/lammps: Update patch_29Mar2019 -> patch_30Apr2019

Reported by:	github release notification

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

science/lammps: Update 28Feb2019 -> 29Mar2019

Switch to devel/llvm80 for DEFAULT_VERSIONS

PR:		235215

science/lammps: Update 12Dec2018 -> 28Feb2019

Update math/eigen3 to 3.3.7

- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7

Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine

science/lammps: Update 22Aug2018 -> 12Dec2018

Reported by:	repology

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

science/lammps: BROKEN on i386

Fix a few minor problems.

science/lammps: Add port options for additional functionality

multimedia/ffmpeg: update to 4.1

Changes:	https://git.ffmpeg.org/gitweb/ffmpeg.git/blob/n4.1:/Changelog
ABI:		https://abi-laboratory.pro/tracker/timeline/ffmpeg/

New port: science/lammps: Classical molecular dynamics code with a focus on
materials modeling