LAMMPS is a classical molecular dynamics code with a focus on materials
modeling. It's an acronym for Large-scale Atomic/Molecular Massively Parallel
Simulator.
LAMMPS has potentials for solid-state materials (metals, semiconductors) and
soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems.
It can be used to model atoms or, more generically, as a parallel particle
simulator at the atomic, meso, or continuum scale.
LAMMPS runs on single processors or in parallel using message-passing techniques
and a spatial-decomposition of the simulation domain. Many of its models have
versions that provide accelerated performance on CPUs, GPUs, and Intel Xeon
Phis. The code is designed to be easy to modify or extend with new
functionality.
===> The following configuration options are available for lammps-20260930:
EXCEPTIONS=on: Enable the use of C++ exceptions
FFMPEG=on: FFmpeg support (WMA, AIFF, AC3, APE...)
GZIP=on: Enable GZIP support
JPEG=on: JPEG image format support
PNG=on: PNG image format support
====> Enable parallelizations:
MPI=on: MPI (Message Passing Interface) support
OPENMP=on: Parallel processing support via OpenMP
====> Enable packages:
H5MD=on: H5MD package based on the libhdf5 library
KIM=on: KIM package based on the OpenKim library/repository
KOKKOS=on: Kokkos package based on the libkokkos library
NETCDF=on: NetCDF package based on the NetCDF library
PLUMED=on: Plumed package based on the plumed library
VORONOI=on: Voro++, Voronoi tessellation package
VTK=off: VTK package based on the external VTK-9 library
===> Use 'make config' to modify these settings
*/*: bump PORTREVISION after OpenBLAS upgrade
Remark: this souldn’t be necessary, because the version of the library is the
same, but due to many changes between these releases, it is safer this way.
PR: 284314
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
science/hdf5: bump PORTREVISION of consumers
The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .
Reported by: VVD <vvd@unislabs.com>
*/*: Replace science/szip with science/libaec
- Bump PORTREVISION of dependent ports for dependency change
szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.
PR: 228743, 246097, 250165
textproc/libxml2: bump all LIB_DEPENDS consumers
This is a separate commit to facilitate easier cherry-picking for
quarterly.
PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)
textproc/libxml2: bump all dependencies
This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246
- Upgrade math/eigen3 to 3.3.8;
- Add some dependencies which might be detected by Find_Package but not
registered;
- Bump PORTREVISION of consumers.
PR: 250833
Submitted by: /me
Approved by: tcberner@ (KDE / maintainer) + exp-run
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas
science/lammps: Remove OPTIONS_DEFINE_clang that doesn't work
According to Mk/bsd.options.mk, only ARCH can be used
(${OPTIONS_DEFINE_${ARCH}}).
OPTIONS_DEFINE_clang caused port options to malfunction.
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
- Remove option for net/openmpi2 from science/pnetcdf (net/openmpi2 is
deprecated and will be removed)
- Fix science/gromacs plist when MPI option is enabled
- Bump PORTREVISION for all the consumers of net/openmpi
Drop dependency on devel/openmp
- Drop if devel/llvm* was used as a substitute
Approved by: yuri, rene (earlier version)
Differential Revision: https://reviews.freebsd.org/D23020
Fix math/openblas and bump dependent ports
* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]
This is correcting issues from r523749 [1][2][4] and r515970 [3]
PR: 231371
Reported by: build cluster [1]
Reported by: Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by: many [5]
Reviewed by: mat, bapt
Approved by: implicit, since this is a build fix
science/lammps: fix build on GCC architectures
Don't enable OpenMP everywhere, it causes an error with GCC, reported on
https://github.com/lammps/lammps/pull/1483
This requires some hackery with ports not supporting options for specific
compilers.
OPENMP flag has removed option helpers due to them not being respected
otherwise.
PR: 241156
Approved by: yuri (maintainer, earlier versior), tcberner (mentor, earlier
version)
Differential Revision: https://reviews.freebsd.org/D21994
