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Port details
py-chainer-chemistry Library for deep learning in biology and chemistry
0.7.1_1 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.7.1_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-08-08 21:06:54
Last Update: 2023-06-27 19:34:34
Commit Hash: 3d9a815
Also Listed In: biology
License: MIT
WWW:
https://github.com/pfnet-research/chainer-chemistry
Description:
Chainer Chemistry is a deep learning framework (based on Chainer) with applications in Biology and Chemistry. It supports various state-of-the-art models (especially GCNN - Graph Convolutional Neural Network) for chemical property prediction.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}chainer-chemistry>0:science/py-chainer-chemistry@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-chainer-chemistry/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-chainer-chemistry
  • pkg install py39-chainer-chemistry
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-chainer-chemistry listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-chainer-chemistry
Package flavors (<flavor>: <package>)
  • py39: py39-chainer-chemistry
distinfo:
TIMESTAMP = 1597692070 SHA256 (chainer-chemistry-0.7.1.tar.gz) = 6626f24c4324227e7912fbaab4c65a79db7163c65ddf64caf06df6650442b681 SIZE (chainer-chemistry-0.7.1.tar.gz) = 119460

Packages (timestamps in pop-ups are UTC):
py311-chainer-chemistry
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.7.1_10.7.1_1--0.7.1_1---
FreeBSD:13:quarterly0.7.1_10.7.1_1--0.7.1_1---
FreeBSD:14:latest0.7.1_10.7.1_1--0.7.1_1---
FreeBSD:14:quarterly-0.7.1_1--0.7.1_1---
FreeBSD:15:latest0.7.1_10.7.1_1n/a-n/a---
 

py39-chainer-chemistry
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly------0.7.1_1-
FreeBSD:14:latest--------
FreeBSD:14:quarterly0.7.1_1-----0.7.1_1-
FreeBSD:15:latest--n/a-n/a-0.7.1_1-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  2. python3.9 : lang/python39
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. py39-numpy>=1.16,1<1.25,1 : math/py-numpy@py39
  2. py39-chainer>=7.0.0 : science/py-chainer@py39
  3. py39-joblib>0 : devel/py-joblib@py39
  4. py39-matplotlib>0 : math/py-matplotlib@py39
  5. py39-pandas>0 : math/py-pandas@py39
  6. py39-scipy>0 : science/py-scipy@py39
  7. py39-scikit-learn>0 : science/py-scikit-learn@py39
  8. py39-tqdm>0 : misc/py-tqdm@py39
  9. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  10. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
science_py-chainer-chemistry
USES:
python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/c/chainer-chemistry/
  2. https://pypi.org/packages/source/c/chainer-chemistry/
Collapse this list.

Number of commits found: 16

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.7.1_1
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
0.7.1_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
0.7.1
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.7.1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.7.1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
0.7.1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
0.7.1
30 Jan 2021 13:29:58
Revision:563407Original commit files touched by this commit
sunpoet search for other commits by this committer
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+

PR:		250103
0.7.1
10 Jan 2021 19:32:24
Revision:561105Original commit files touched by this commit
rene search for other commits by this committer
Remove empty PY_TYPING from ports using Python 3.6+

Leave out textproc/py-sphinx[18] for now.
0.7.1
17 Aug 2020 20:05:59
Revision:545182Original commit files touched by this commit
yuri search for other commits by this committer
science/py-chainer-chemistry: Update 0.7.0 -> 0.7.1

Reported by:	portscout
0.7.0
22 Dec 2019 03:10:18
Revision:520604Original commit files touched by this commit
yuri search for other commits by this committer
science/py-chainer-chemistry: Update 0.6.0 -> 0.7.0

Reported by:	portscout
0.6.0
17 Dec 2019 13:33:40
Revision:520330Original commit files touched by this commit
antoine search for other commits by this committer
Unbreak bulk -a
0.6.0
06 Oct 2019 17:48:10
Revision:513896Original commit files touched by this commit
yuri search for other commits by this committer
science/py-chainer-chemistry: Update 0.5.0 -> 0.6.0

Reported by:	repology
0.5.0
09 Aug 2019 18:34:47
Revision:508460Original commit files touched by this commit
sunpoet search for other commits by this committer
Revert r508450

r508454 has fixed the problem (bulk -a with BUILD_ALL_PYTHON_FLAVORS).
0.5.0
09 Aug 2019 12:54:27
Revision:508450Original commit files touched by this commit
mat search for other commits by this committer
Fix bulk -a with BUILD_ALL_PYTHON_FLAVORS.

devel/py-typing-extensions does not support Python 3.7+, so ports
requiring it can't either.
0.5.0
08 Aug 2019 21:05:43
Revision:508406Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/py-chainer-chemistry: Library for deep learning in biology and
chemistry

Number of commits found: 16