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Things are slow!

Some of the pages ont the website are slow. I know diskio is way up. I don't know what it is but it's been going on for about three weeks. It might have been a change to the zpool recordsize on the PostgreSQL database dataset.

One way to know: copy the dataset to another dataset with the original recordsize and use that. I hope can get to that later this week.

I have not tackled the issue yet because I've been concentrating on the BSDCan and PGCon calls for papers.

Port details
py-mlpy High performance Python package for predictive modeling
3.5.0_9 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 3.5.0Version of this port present on the latest quarterly branch.
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-04-23 17:02:40
Last Update: 2019-10-26 00:41:34
SVN Revision: 515671
Also Listed In: python
License: GPLv3
Description:
SVNWeb : Homepage

There is no configure plist information for this port.

Dependency lines:
  • py36-mlpy>0:science/py-mlpy
To install the port: cd /usr/ports/science/py-mlpy/ && make install clean
To add the package: pkg install py36-mlpy
PKGNAME: py36-mlpy
Package flavors (<flavor>: <package>)
  • py36: py36-mlpy
  • py27: py27-mlpy
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py36-numpy>0 : math/py-numpy@py36
  2. cython-3.6 : lang/cython@py36
  3. py36-setuptools>0 : devel/py-setuptools@py36
  4. python3.6 : lang/python36
Runtime dependencies:
  1. py36-numpy>0 : math/py-numpy@py36
  2. py36-setuptools>0 : devel/py-setuptools@py36
  3. python3.6 : lang/python36
Library dependencies:
  1. libgsl.so : math/gsl
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. http://cytranet.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  2. http://downloads.sourceforge.net/project/mlpy/mlpy%203.5.0/
  3. http://excellmedia.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  4. http://freefr.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  5. http://jaist.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  6. http://kent.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  7. http://nchc.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  8. http://netcologne.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  9. http://netix.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  10. http://superb-dca2.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  11. http://superb-sea2.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  12. http://ufpr.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  13. http://vorboss.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  14. https://cytranet.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  15. https://downloads.sourceforge.net/project/mlpy/mlpy%203.5.0/
  16. https://excellmedia.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  17. https://freefr.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  18. https://jaist.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  19. https://kent.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  20. https://nchc.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  21. https://netcologne.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  22. https://netix.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  23. https://superb-dca2.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  24. https://superb-sea2.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  25. https://ufpr.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  26. https://vorboss.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 31

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
25 Oct 2019 23:41:34
Original commit files touched by this commit  3.5.0_9
Revision:515671
tcberner search for other commits by this committer
math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
26 Jul 2019 20:46:57
Original commit files touched by this commit  3.5.0_8
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
05 Apr 2019 16:54:43
Original commit files touched by this commit  3.5.0_7
Revision:497970
amdmi3 search for other commits by this committer
- Document incompatibility with python 3.7+

Approved by:	portmgr blanket
12 Dec 2018 01:35:36
Original commit files touched by this commit  3.5.0_7
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
23 Jun 2018 08:27:14
Original commit files touched by this commit  3.5.0_6
Revision:473116
tcberner search for other commits by this committer
Update math/gsl to 2.5

PR:		229067
10 Mar 2018 17:46:06
Original commit files touched by this commit  3.5.0_5
Revision:464084
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
30 Nov 2017 15:50:34
Original commit files touched by this commit  3.5.0_4
Revision:455210  Sanity Test Failure
mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
03 Jul 2017 20:38:12
Original commit files touched by this commit  3.5.0_4
Revision:444988
tcberner search for other commits by this committer
Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408
02 May 2017 05:26:40
Original commit files touched by this commit  3.5.0_3
Revision:439928
tcberner search for other commits by this committer
Update math/gsl to 2.3

This release introduces some new features and fixes several bugs:
	http://savannah.gnu.org/forum/forum.php?forum_id=8751

* update to 2.3 and take maintainership
* update math/py-gsl to 2.2.0 for gsl2 support
* update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support

PR:		218952
Exp-run by:	antoine
Reviewed by:	mat, rakuco
Approved by:	rakuco (mentor)
Differential Revision:	https://reviews.freebsd.org/D10522
01 Apr 2016 14:25:18
Original commit files touched by this commit  3.5.0_2
Revision:412349
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
23 Jan 2015 15:21:52
Original commit files touched by this commit  3.5.0_2
Revision:377743
antoine search for other commits by this committer
Canonicalize some dependencies on numpy
24 Oct 2014 16:50:43
Original commit files touched by this commit  3.5.0_2
Revision:371453
mva search for other commits by this committer
- Convert ports of science/ and security to new USES=python

Approved by:	portmgr (implicit)
10 Sep 2014 20:50:37
Original commit files touched by this commit  3.5.0_2
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
17 Aug 2014 13:09:56
Original commit files touched by this commit  3.5.0_1
Revision:365182
tijl search for other commits by this committer
math/gsl:
- Add USES=libtool and bump dependent ports
- Add USES=pathfix and INSTALL_TARGET=install-strip

Approved by:	portmgr (implicit, bump unstage port)
01 Jun 2014 10:57:42
Original commit files touched by this commit  3.5.0
Revision:356094
miwi search for other commits by this committer
- Drop empty files/dirs
31 May 2014 13:56:17
Original commit files touched by this commit  3.5.0
Revision:355973
wen search for other commits by this committer
- Added STAGE support
- Update to 3.5.0

PR:		190314
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com>
10 Mar 2014 20:55:22
Original commit files touched by this commit  2.2.2_4
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
26 Oct 2013 00:52:36
Original commit files touched by this commit  2.2.2_3
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 22:48:31
Original commit files touched by this commit  2.2.2_2
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
26 Aug 2013 16:06:38
Original commit files touched by this commit  2.2.2_2
Revision:325401
bf search for other commits by this committer
Update math/gsl to 1.16 and adjust some dependent ports
21 Jan 2012 17:40:15
Original commit files touched by this commit  2.2.2_1

eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
23 Sep 2011 22:26:39
Original commit files touched by this commit  2.2.2_1

amdmi3 search for other commits by this committer
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav
09 May 2011 16:42:28
Original commit files touched by this commit  2.2.2_1

bf search for other commits by this committer
Update math/gsl to 1.15, and adjust PORTREVISION
and LIB_DEPENDS of dependent ports
23 Dec 2010 08:22:40
Original commit files touched by this commit  2.2.2

wen search for other commits by this committer
- Update to 2.2.2
21 Dec 2010 01:22:30
Original commit files touched by this commit  2.2.1_1

wen search for other commits by this committer
- Fix run error because of lacking cpow() function in FreeBSD.
- Remove MD5

PR:             ports/153299
Submitted by:   Kawaguti Ginga <ginga-freebsd@ginganet.org>
28 Oct 2010 12:09:35
Original commit files touched by this commit  2.2.1

wen search for other commits by this committer
- Update to 2.2.1
29 Mar 2010 01:12:27
Original commit files touched by this commit  2.1.0_2

wen search for other commits by this committer
- Bump PORTREVISION to chase the update of math/gsl
01 Dec 2009 20:33:45
Original commit files touched by this commit  2.1.0_1

makc search for other commits by this committer
Chase math/gsl update,
bump PORTREVISION
01 Dec 2009 13:05:06
Original commit files touched by this commit  2.1.0

wen search for other commits by this committer
- Update to 2.1.0
- Update my mail address to FreeBSD
05 Jun 2009 21:59:04
Original commit files touched by this commit  2.0.3

miwi search for other commits by this committer
- Update to 2.0.3

PR:             135210
Submitted by:   Wen Heping <wenheping@gmail.com> (maintainer)
23 Apr 2009 17:02:20
Original commit files touched by this commit  2.0.0

miwi search for other commits by this committer
Machine Learning PY (mlpy) is a high-performance Python package for
predictive modeling. It makes extensive use of numpy (http://scipy.org)
to provide fast N-dimensional array manipulation and easy integration of
C code. mlpy provides high level procedures that support, with few lines
of code, the design of rich Data Analysis Protocols (DAPs) for
preprocessing, clustering, predictive classification and feature
selection. Methods are available for feature weighting and ranking, data
resampling, error evaluation and experiment landscaping.The package
includes tools to measure stability in sets of ranked feature lists.

WWW:    http://mlpy.fbk.eu/

PR:             ports/133932
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 31

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