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Port details
py-mlpy High performance Python package for predictive modeling
3.5.0_9 science Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.5.0_9Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Uses deprecated version of python
Expired This port expired on: 2020-08-15
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-04-23 17:02:40
Last Update: 2020-08-15 10:50:59
SVN Revision: 544927
Also Listed In: python
License: GPLv3
WWW:
http://mlpy.sourceforge.net/
Description:
Machine Learning PY (mlpy) is a high-performance Python package for predictive modeling. It makes extensive use of numpy (http://scipy.org) to provide fast N-dimensional array manipulation and easy integration of C code. mlpy provides high level procedures that support, with few lines of code, the design of rich Data Analysis Protocols (DAPs) for preprocessing, clustering, predictive classification and feature selection. Methods are available for feature weighting and ranking, data resampling, error evaluation and experiment landscaping.The package includes tools to measure stability in sets of ranked feature lists. WWW: http://mlpy.sourceforge.net/
Homepage    cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}mlpy>0:science/py-mlpy@${PY_FLAVOR}
No installation instructions:
This port has been deleted.
PKGNAME: py27-mlpy
Package flavors (<flavor>: <package>)
  • py27: py27-mlpy
distinfo:
SHA256 (mlpy-3.5.0.tar.gz) = 344fa75fbf9f76af72f6a346d5309613defc4d244bac13c218e509a51d68bf6a SIZE (mlpy-3.5.0.tar.gz) = 1961206

No package information for this port in our database
Sometimes this happens. Not all ports have packages.
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py27-numpy>=1.15,1<1.19,1 : math/py-numpy@py27
  2. cython-2.7 : lang/cython@py27
  3. py27-setuptools>0 : devel/py-setuptools@py27
  4. python2.7 : lang/python27
Runtime dependencies:
  1. py27-numpy>=1.15,1<1.19,1 : math/py-numpy@py27
  2. py27-setuptools>0 : devel/py-setuptools@py27
  3. python2.7 : lang/python27
Library dependencies:
  1. libgsl.so : math/gsl
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
N/A
USES:
python:-3.6
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (24 items)
Collapse this list.
  1. http://downloads.sourceforge.net/project/mlpy/mlpy%203.5.0/
  2. http://excellmedia.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  3. http://freefr.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  4. http://jaist.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  5. http://kent.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  6. http://nchc.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  7. http://netcologne.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  8. http://netix.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  9. http://superb-dca2.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  10. http://superb-sea2.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  11. http://ufpr.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  12. http://vorboss.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  13. https://downloads.sourceforge.net/project/mlpy/mlpy%203.5.0/
  14. https://excellmedia.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  15. https://freefr.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  16. https://jaist.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  17. https://kent.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  18. https://nchc.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  19. https://netcologne.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  20. https://netix.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  21. https://superb-dca2.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  22. https://superb-sea2.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  23. https://ufpr.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
  24. https://vorboss.dl.sourceforge.net/project/mlpy/mlpy%203.5.0/
Collapse this list.

Number of commits found: 33

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
3.5.0_9
15 Aug 2020 10:50:59
Revision:544927Original commit files touched by this commit
rene search for other commits by this committer
Remove deprecated ports:

2020-08-15 archivers/py-backports.lzma: Uses deprecated version of python
2020-08-15 archivers/py-bup: Uses deprecated version of python
2020-08-15 archivers/py-librtfcomp: Uses deprecated version of python
2020-08-15 audio/blop-lv2: Uses deprecated version of python
2020-08-15 audio/bs2b-lv2: Uses deprecated version of python
2020-08-15 audio/py-gmusicproxy: Uses deprecated version of python
2020-08-15 audio/py-karaoke: Uses deprecated version of python
2020-08-15 audio/py-openal: Uses deprecated version of python
2020-08-15 audio/py-py-jack: Uses deprecated version of python
2020-08-15 audio/py-xmms2: Uses deprecated version of python
2020-08-15 audio/triceratops-lv2: Uses deprecated version of python
2020-08-15 biology/py-biom-format: Uses deprecated version of python
2020-08-15 comms/py-bulksms: Uses deprecated version of python
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.5.0_9
23 Feb 2020 15:25:53
Revision:526925Original commit files touched by this commit
antoine search for other commits by this committer
Deprecate a few ports

With hat:	portmgr
3.5.0_9
25 Oct 2019 23:41:34
Revision:515671Original commit files touched by this commit
tcberner search for other commits by this committer
math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
3.5.0_8
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
3.5.0_7
05 Apr 2019 16:54:43
Revision:497970Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Document incompatibility with python 3.7+

Approved by:	portmgr blanket
3.5.0_7
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
3.5.0_6
23 Jun 2018 08:27:14
Revision:473116Original commit files touched by this commit
tcberner search for other commits by this committer
Update math/gsl to 2.5

PR:		229067
3.5.0_5
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
3.5.0_4
30 Nov 2017 15:50:34
Revision:455210Original commit files touched by this commit Sanity Test Failure
mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.5.0_4
03 Jul 2017 20:38:12
Revision:444988Original commit files touched by this commit
tcberner search for other commits by this committer
Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408
3.5.0_3
02 May 2017 05:26:40
Revision:439928Original commit files touched by this commit
tcberner search for other commits by this committer
Update math/gsl to 2.3

This release introduces some new features and fixes several bugs:
	http://savannah.gnu.org/forum/forum.php?forum_id=8751

* update to 2.3 and take maintainership
* update math/py-gsl to 2.2.0 for gsl2 support
* update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support

PR:		218952
Exp-run by:	antoine
Reviewed by:	mat, rakuco
Approved by:	rakuco (mentor)
Differential Revision:	https://reviews.freebsd.org/D10522
3.5.0_2
01 Apr 2016 14:25:18
Revision:412349Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
3.5.0_2
23 Jan 2015 15:21:52
Revision:377743Original commit files touched by this commit
antoine search for other commits by this committer
Canonicalize some dependencies on numpy
3.5.0_2
24 Oct 2014 16:50:43
Revision:371453Original commit files touched by this commit
mva search for other commits by this committer
- Convert ports of science/ and security to new USES=python

Approved by:	portmgr (implicit)
3.5.0_2
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
3.5.0_1
17 Aug 2014 13:09:56
Revision:365182Original commit files touched by this commit
tijl search for other commits by this committer
math/gsl:
- Add USES=libtool and bump dependent ports
- Add USES=pathfix and INSTALL_TARGET=install-strip

Approved by:	portmgr (implicit, bump unstage port)
3.5.0
01 Jun 2014 10:57:42
Revision:356094Original commit files touched by this commit
miwi search for other commits by this committer
- Drop empty files/dirs
3.5.0
31 May 2014 13:56:17
Revision:355973Original commit files touched by this commit
wen search for other commits by this committer
- Added STAGE support
- Update to 3.5.0

PR:		190314
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com>
2.2.2_4
10 Mar 2014 20:55:22
Revision:347809Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
2.2.2_3
26 Oct 2013 00:52:36
Revision:331644Original commit files touched by this commit
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.2.2_2
20 Sep 2013 22:48:31
Revision:327767Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
2.2.2_2
26 Aug 2013 16:06:38
Revision:325401Original commit files touched by this commit
bf search for other commits by this committer
Update math/gsl to 1.16 and adjust some dependent ports
2.2.2_1
21 Jan 2012 17:40:15
Original commit files touched by this commit
eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
2.2.2_1
23 Sep 2011 22:26:39
Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav
2.2.2_1
09 May 2011 16:42:28
Original commit files touched by this commit
bf search for other commits by this committer
Update math/gsl to 1.15, and adjust PORTREVISION
and LIB_DEPENDS of dependent ports
2.2.2
23 Dec 2010 08:22:40
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 2.2.2
2.2.1_1
21 Dec 2010 01:22:30
Original commit files touched by this commit
wen search for other commits by this committer
- Fix run error because of lacking cpow() function in FreeBSD.
- Remove MD5

PR:             ports/153299
Submitted by:   Kawaguti Ginga <ginga-freebsd@ginganet.org>
2.2.1
28 Oct 2010 12:09:35
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 2.2.1
2.1.0_2
29 Mar 2010 01:12:27
Original commit files touched by this commit
wen search for other commits by this committer
- Bump PORTREVISION to chase the update of math/gsl
2.1.0_1
01 Dec 2009 20:33:45
Original commit files touched by this commit
makc search for other commits by this committer
Chase math/gsl update,
bump PORTREVISION
2.1.0
01 Dec 2009 13:05:06
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 2.1.0
- Update my mail address to FreeBSD
2.0.3
05 Jun 2009 21:59:04
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 2.0.3

PR:             135210
Submitted by:   Wen Heping <wenheping@gmail.com> (maintainer)
2.0.0
23 Apr 2009 17:02:20
Original commit files touched by this commit
miwi search for other commits by this committer
Machine Learning PY (mlpy) is a high-performance Python package for
predictive modeling. It makes extensive use of numpy (http://scipy.org)
to provide fast N-dimensional array manipulation and easy integration of
C code. mlpy provides high level procedures that support, with few lines
of code, the design of rich Data Analysis Protocols (DAPs) for
preprocessing, clustering, predictive classification and feature
selection. Methods are available for feature weighting and ranking, data
resampling, error evaluation and experiment landscaping.The package
includes tools to measure stability in sets of ranked feature lists.

WWW:    http://mlpy.fbk.eu/

PR:             ports/133932
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 33