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Port details
py-nilearn Statistical learning for neuroimaging in Python
0.10.4 science on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.10.3Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Depends on expired devel/py-codecov
Expiration Date EXPIRATION DATE: 2024-12-31
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-01-21 03:53:55
Last Update: 2024-09-30 19:37:15
Commit Hash: f49cd2f
People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
Also Listed In: python
License: BSD3CLAUSE
WWW:
https://nilearn.github.io/
Description:
Nilearn enables approachable and versatile analyses of brain volumes. It provides statistical and machine-learning tools, with instructive documentation & open community. It supports general linear model (GLM) based analysis and leverages the scikit-learn Python toolbox for multivariate statistics with applications such as predictive modelling, classification, decoding, or connectivity analysis. Nilearn now includes the functionality of Nistats. Here's a guide to replacing Nistats imports to work in Nilearn.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}nilearn>0:science/py-nilearn@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-nilearn/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-nilearn
  • pkg install py311-nilearn
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-nilearn listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py311-nilearn
Package flavors (<flavor>: <package>)
  • py311: py311-nilearn
distinfo:
TIMESTAMP = 1726458750 SHA256 (nilearn-0.10.4.tar.gz) = 9450bd56a776d997b324f45dd18bf96e89bd8d80160974fcc759333fbaea35c2 SIZE (nilearn-0.10.4.tar.gz) = 12442599

Packages (timestamps in pop-ups are UTC):
py39-nilearn
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly------0.10.1-
FreeBSD:14:latest--------
FreeBSD:14:quarterly------0.10.1-
FreeBSD:15:latest--n/a-n/a-0.10.3-
 

py311-nilearn
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.10.40.10.4--0.10.4---
FreeBSD:13:quarterly0.10.30.10.3--0.10.3---
FreeBSD:14:latest0.10.30.10.4--0.10.4---
FreeBSD:14:quarterly0.10.30.10.4--0.10.4---
FreeBSD:15:latest0.10.4-n/a0.10.4n/a---
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py311-hatch-vcs>0 : devel/py-hatch-vcs@py311
  2. py311-hatchling>0 : devel/py-hatchling@py311
  3. python3.11 : lang/python311
  4. py311-build>=0 : devel/py-build@py311
  5. py311-installer>=0 : devel/py-installer@py311
Test dependencies:
  1. py311-pytest>0 : devel/py-pytest@py311
  2. py311-pytest-cov>=0 : devel/py-pytest-cov@py311
  3. python3.11 : lang/python311
Runtime dependencies:
  1. py311-codecov>0 : devel/py-codecov@py311
  2. py311-joblib>=1.0.0 : devel/py-joblib@py311
  3. py311-lxml>0 : devel/py-lxml@py311
  4. py311-matplotlib>0 : math/py-matplotlib@py311
  5. py311-nibabel>=4.0.0 : science/py-nibabel@py311
  6. py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
  7. py311-packaging>0 : devel/py-packaging@py311
  8. py311-pandas>=1.1.5 : math/py-pandas@py311
  9. py311-requests>=2.25.0 : www/py-requests@py311
  10. py311-scikit-learn>=1.0.0 : science/py-scikit-learn@py311
  11. py311-scipy>=1.8.0 : science/py-scipy@py311
  12. bash : shells/bash
  13. python3.11 : lang/python311
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
science_py-nilearn
USES:
python shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/n/nilearn/
  2. https://pypi.org/packages/source/n/nilearn/
Collapse this list.

Number of commits found: 18

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.10.4
30 Sep 2024 19:37:15
commit hash: f49cd2fa7a4a17012b9b742b0d35d8463d70942fcommit hash: f49cd2fa7a4a17012b9b742b0d35d8463d70942fcommit hash: f49cd2fa7a4a17012b9b742b0d35d8463d70942fcommit hash: f49cd2fa7a4a17012b9b742b0d35d8463d70942f files touched by this commit
Rene Ladan (rene) search for other commits by this committer
science/py-nilearn: expire on 2024-12-31 for devel/py-codecov
0.10.4
16 Sep 2024 07:48:26
commit hash: f8effc7f169d145a1b071289bd9fc276becd6169commit hash: f8effc7f169d145a1b071289bd9fc276becd6169commit hash: f8effc7f169d145a1b071289bd9fc276becd6169commit hash: f8effc7f169d145a1b071289bd9fc276becd6169 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nilearn: update 0.10.3 → 0.10.4

Reported by:	portscout
0.10.3
30 Jan 2024 08:56:28
commit hash: a05d8c71195b5bb940b4f9fd2bce93ab85807c8ecommit hash: a05d8c71195b5bb940b4f9fd2bce93ab85807c8ecommit hash: a05d8c71195b5bb940b4f9fd2bce93ab85807c8ecommit hash: a05d8c71195b5bb940b4f9fd2bce93ab85807c8e files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nilearn: update 0.10.1 → 0.10.3

Reported by:	portscout
0.10.1
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
0.10.1
27 Jun 2023 04:41:40
commit hash: c78f83604899449b7e6444006dfebd31eba62c45commit hash: c78f83604899449b7e6444006dfebd31eba62c45commit hash: c78f83604899449b7e6444006dfebd31eba62c45commit hash: c78f83604899449b7e6444006dfebd31eba62c45 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nilearn: Update 0.8.1 → 0.10.1

Reported by:	portscout
0.8.1_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
0.8.1
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.8.1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.8.1
16 Jul 2022 06:41:57
commit hash: f6f6415009b320ce72e9cf3d0d7210ce211e23a3commit hash: f6f6415009b320ce72e9cf3d0d7210ce211e23a3commit hash: f6f6415009b320ce72e9cf3d0d7210ce211e23a3commit hash: f6f6415009b320ce72e9cf3d0d7210ce211e23a3 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nilearn: Add comment
0.8.1
23 Mar 2022 11:44:26
commit hash: 43f77cdd9ba0d7df341ac32c99dc4d9cb9a1f7e2commit hash: 43f77cdd9ba0d7df341ac32c99dc4d9cb9a1f7e2commit hash: 43f77cdd9ba0d7df341ac32c99dc4d9cb9a1f7e2commit hash: 43f77cdd9ba0d7df341ac32c99dc4d9cb9a1f7e2 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
science/py-nilearn: mark BROKEN

Approved by:	portmgr blanket
0.8.1
18 Sep 2021 17:48:28
commit hash: f0257531e9ec73001642032056b5357ab28f985fcommit hash: f0257531e9ec73001642032056b5357ab28f985fcommit hash: f0257531e9ec73001642032056b5357ab28f985fcommit hash: f0257531e9ec73001642032056b5357ab28f985f files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nilearn: Update 0.8.0 -> 0.8.1

Reported by:	portscout
0.8.0
18 Jun 2021 17:16:59
commit hash: a4860af884d34dbdc62bde103429e36beb7419cbcommit hash: a4860af884d34dbdc62bde103429e36beb7419cbcommit hash: a4860af884d34dbdc62bde103429e36beb7419cbcommit hash: a4860af884d34dbdc62bde103429e36beb7419cb files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nilearn: Update 0.7.1 -> 0.8.0

Reported by:	portscout
0.7.1
18 Apr 2021 00:57:38
commit hash: 52c6d02708d05e3c2c917ff36e5678fa724372e7commit hash: 52c6d02708d05e3c2c917ff36e5678fa724372e7commit hash: 52c6d02708d05e3c2c917ff36e5678fa724372e7commit hash: 52c6d02708d05e3c2c917ff36e5678fa724372e7 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nilearn: Update 0.7.0 -> 0.7.1

Reported by:	portscout
0.7.0
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
0.7.0
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
0.7.0
30 Jan 2021 13:37:03
Revision:563408Original commit files touched by this commit
sunpoet search for other commits by this committer
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+

PR:		250103
0.7.0
21 Jan 2021 03:53:48
Revision:562173Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/py-nilearn: Statistical learning for neuroimaging in Python

Number of commits found: 18