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Port details
py-pymol OpenGL-based molecular visualization system
2.5.0.97_2 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.5.0.97_2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2017-12-19 19:49:25
Last Update: 2023-10-29 20:37:06
Commit Hash: 4731af6
Also Listed In: biology python
License: PyMOL
WWW:
https://pymol.org/2/
Description:
PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone! This version represents the community-supported open source distribution of the closed source commercial product PyMOL.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}pymol>0:science/py-pymol@${PY_FLAVOR}
Conflicts:
CONFLICTS_INSTALL:
  • py39-chempy
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port:
cd /usr/ports/science/py-pymol/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-pymol
  • pkg install py39-pymol
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-pymol listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-pymol
Package flavors (<flavor>: <package>)
  • py39: py39-pymol
distinfo:
TIMESTAMP = 1669581024 SHA256 (schrodinger-pymol-open-source-v2.5.0-97-gd24468af_GH0.tar.gz) = 801e8e71a02c56c07aacd241044e397586a435a4435b74845d779d9846c994af SIZE (schrodinger-pymol-open-source-v2.5.0-97-gd24468af_GH0.tar.gz) = 10495556

Packages (timestamps in pop-ups are UTC):
py39-pymol
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest2.5.0.97_22.5.0.97_2--2.5.0.97_2---
FreeBSD:13:quarterly2.5.0.97_22.5.0.97_2--2.5.0.97_2-2.5.0.97_2-
FreeBSD:14:latest2.5.0.97_22.5.0.97_2--2.5.0.97_2---
FreeBSD:14:quarterly2.5.0.97_22.5.0.97_2--2.5.0.97_2-2.5.0.97_2-
FreeBSD:15:latest2.5.0.97_22.5.0.97_2n/a-n/a-2.5.0.97_2-
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  2. glm.hpp : math/glm
  3. mmtf.hpp : science/mmtf-cpp
  4. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  5. python3.9 : lang/python39
  6. xorgproto>=0 : x11/xorgproto
  7. xorgproto>=0 : x11/xorgproto
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. py39-msgpack>0 : devel/py-msgpack@py39
  2. py39-Pmw>0 : x11-toolkits/py-Pmw@py39
  3. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  4. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  5. python3.9 : lang/python39
  6. py39-qt5-pyqt>=5.15.10 : devel/py-qt5-pyqt@py39
Library dependencies:
  1. libfreetype.so : print/freetype2
  2. libpng.so : graphics/png
  3. libmsgpackc.so : devel/msgpack-c
  4. libnetcdf.so : science/netcdf
  5. libGL.so : graphics/libglvnd
  6. libGLEW.so : graphics/glew
  7. libGLU.so : graphics/libGLU
  8. libglut.so : graphics/freeglut
  9. libxml2.so : textproc/libxml2
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for py39-pymol-2.5.0.97_2: ====> GUI (Graphical User Interface) support: you have to select exactly one of them QT5=on: Qt 5 toolkit support TK=off: Tk GUI toolkit support ===> Use 'make config' to modify these settings
Options name:
science_py-pymol
USES:
compiler:c++11-lang gl gnome python tar:bz2 pyqt:5
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/schrodinger/pymol-open-source/tar.gz/v2.5.0-97-gd24468af?dummy=/
Collapse this list.

Number of commits found: 39

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2.5.0.97_2
29 Oct 2023 20:37:06
commit hash: 4731af6fe5de070a568fdb4daa3d126408170274commit hash: 4731af6fe5de070a568fdb4daa3d126408170274commit hash: 4731af6fe5de070a568fdb4daa3d126408170274commit hash: 4731af6fe5de070a568fdb4daa3d126408170274 files touched by this commit
Jason E. Hale (jhale) search for other commits by this committer
Revert "science/py-pymol: Mark DEPRECATED"

This reverts commit c3da27075a6d38d1c3659a242245c519a6756165.

devel/py-qt5-pyqt is no longer marked DEPRECATED. This port does not
require python bindings for www/qt5-webkit.
2.5.0.97_2
28 Oct 2023 14:39:52
commit hash: c3da27075a6d38d1c3659a242245c519a6756165commit hash: c3da27075a6d38d1c3659a242245c519a6756165commit hash: c3da27075a6d38d1c3659a242245c519a6756165commit hash: c3da27075a6d38d1c3659a242245c519a6756165 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
science/py-pymol: Mark DEPRECATED

- Depends on deprecated devel/py-qt5-pyqt
- Set EXPIRATION_DATE 2023-11-28

Approved by:	portmgr (blanket)
2.5.0.97_2
19 Oct 2023 07:07:31
commit hash: c07e560b22f7edc7d26098be318af3c415311c9acommit hash: c07e560b22f7edc7d26098be318af3c415311c9acommit hash: c07e560b22f7edc7d26098be318af3c415311c9acommit hash: c07e560b22f7edc7d26098be318af3c415311c9a files touched by this commit
Robert Clausecker (fuz) search for other commits by this committer
science/py-pymol: fix build on targets without OpenMP

armv7 still doesn't have it, so disable OpenMP there to make the port
build.  The previous problem from PR 262208 seems to no longer occur.

Approved by:	portmgr (build fix blanket)
MFH:		2023Q4
2.5.0.97_2
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
2.5.0.97_2
25 Apr 2023 15:17:15
commit hash: feb1fa34f58ea796656b86a81c2a2996b0b03c96commit hash: feb1fa34f58ea796656b86a81c2a2996b0b03c96commit hash: feb1fa34f58ea796656b86a81c2a2996b0b03c96commit hash: feb1fa34f58ea796656b86a81c2a2996b0b03c96 files touched by this commit
Christian Weisgerber (naddy) search for other commits by this committer
audio/opus: bump consumers after update to 1.4
2.5.0.97_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
2.5.0.97
27 Nov 2022 21:03:05
commit hash: a2b852ee70ee234f4b2360f72ea2d89f48943b37commit hash: a2b852ee70ee234f4b2360f72ea2d89f48943b37commit hash: a2b852ee70ee234f4b2360f72ea2d89f48943b37commit hash: a2b852ee70ee234f4b2360f72ea2d89f48943b37 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-pymol: Update 2.4.0 -> 2.5.0-97
2.4.0_7
16 Oct 2022 21:10:02
commit hash: 9e03d9958ec94c454641adc956fd3b40188fc925commit hash: 9e03d9958ec94c454641adc956fd3b40188fc925commit hash: 9e03d9958ec94c454641adc956fd3b40188fc925commit hash: 9e03d9958ec94c454641adc956fd3b40188fc925 files touched by this commit
Adam Weinberger (adamw) search for other commits by this committer
devel/msgpack: Update and split into C and C++ versions

Upstream now provides msgpack as two separate distributions: a C version
with the traditional libmsgpackc.so library, and a header-only C++
version.

devel/msgpack is now devel/msgpack-c and devel/msgpack-cxx, and its
consumers now point to one or both. Note that it is entirely possible
for both to be required. PORTREVISION bump for all consumers.

In my testing, it's not clear that the MSGPACK option in the mariadb
ports actually does anything. I don't think mariadb is actually linking
against msgpack, even before this commit.
2.4.0_6
11 Sep 2022 10:20:14
commit hash: ddae4e92d8313a1461145e3b4f0232fe463feaeecommit hash: ddae4e92d8313a1461145e3b4f0232fe463feaeecommit hash: ddae4e92d8313a1461145e3b4f0232fe463feaeecommit hash: ddae4e92d8313a1461145e3b4f0232fe463feaee files touched by this commit
Felix Palmen (zirias) search for other commits by this committer
Mk/Uses: always use colon for build/run suffix

Most USES use a colon for build/run(/test) suffixes. Change kde.mk,
qt.mk and pyqt.mk to do the same, and update all ports using that.

Document in CHANGES.

PR:			266034
Exp-run by:		antoine
Approved by:		tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D36349
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.4.0_6
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.4.0_6
20 Jul 2022 14:22:51
commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.4.0_6
10 Apr 2022 19:11:41
commit hash: d63665f7cd9c99880704a3c5bc221829cb009744commit hash: d63665f7cd9c99880704a3c5bc221829cb009744commit hash: d63665f7cd9c99880704a3c5bc221829cb009744commit hash: d63665f7cd9c99880704a3c5bc221829cb009744 files touched by this commit
Charlie Li (vishwin) search for other commits by this committer
textproc/libxml2: bump all LIB_DEPENDS consumers

This is a separate commit to facilitate easier cherry-picking for
quarterly.

PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)
2.4.0_5
26 Mar 2022 08:27:27
commit hash: 247c7db7513f1264922428278678da641c5a3f52commit hash: 247c7db7513f1264922428278678da641c5a3f52commit hash: 247c7db7513f1264922428278678da641c5a3f52commit hash: 247c7db7513f1264922428278678da641c5a3f52 files touched by this commit
Matthias Fechner (mfechner) search for other commits by this committer
textproc/libxml2: bump all dependencies

This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246
2.4.0_4
07 Mar 2022 17:39:13
commit hash: 2d8f8573167d49958b7fbf471f42a360a20227d8commit hash: 2d8f8573167d49958b7fbf471f42a360a20227d8commit hash: 2d8f8573167d49958b7fbf471f42a360a20227d8commit hash: 2d8f8573167d49958b7fbf471f42a360a20227d8 files touched by this commit
Loïc Bartoletti (lbartoletti) search for other commits by this committer
devel/py-qt5, devel/py-sip: Update versions

- Update sip to 6.5.1
- Update PyQt5 to 5.15.6
- Update PyQtChart, PyQtNetworkAuth and PyQtWebengine to 5.15.5
- Update PyQtSip to 12.9.1
- Update PyQtBuilder to 1.12.2
- Add ${_MAKE_JOBS} for pyqt.mk (reported by Tatsuki Makino)

PR:		261685
Exp-run by:	antoine
2.4.0_3
27 Jan 2022 06:12:26
commit hash: 4f0a5e1540c391610950d6ae9ce64ba0dd218d72commit hash: 4f0a5e1540c391610950d6ae9ce64ba0dd218d72commit hash: 4f0a5e1540c391610950d6ae9ce64ba0dd218d72commit hash: 4f0a5e1540c391610950d6ae9ce64ba0dd218d72 files touched by this commit
Loïc Bartoletti (lbartoletti) search for other commits by this committer
PyQt: Update sip to 6.5.0, reintroduce sip4 and simplify PyQt framework.

SIP:
As mentioned in the update from sip to sip5, this is a transitional version
to remove what is deprecated in sip4.
Sip6 completely removes the deprecated parts.
Unfortunately, some ports — mostly cura things — can not use sip6, so we
reintroduce sip4.

PyQt:
At the same time, we took the opportunity to simplify PyQT and propose only one
package as for devel/pyside2. */py-qt5-* have been merged — excepted chart,
networkauth and webengine — into devel/py-qt5-pyqt.

This allows us to be in adequacy with the packages that the author of these
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.4.0_3
22 Jun 2021 18:53:08
commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77 files touched by this commit
Kevin Bowling (kbowling) search for other commits by this committer
graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824
2.4.0_2
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.4.0_2
12 Mar 2021 15:55:03
Revision:568184Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Update math/glm to 0.9.9.8
2.4.0_1
26 Jan 2021 14:04:01
Revision:562679Original commit files touched by this commit
sunpoet search for other commits by this committer
Bump PORTREVISION for science/netcdf shlib change
2.4.0
24 Dec 2020 13:37:41
Revision:559091Original commit files touched by this commit
fluffy search for other commits by this committer
science/py-pymol: switch to PYTHON_EXT_SUFFIX
2.4.0
29 May 2020 08:42:46
Revision:536956Original commit files touched by this commit
antoine search for other commits by this committer
pymol fails to build with python 2.7

Reported by:	pkg-fallout
2.4.0
21 May 2020 07:17:55
Revision:536079Original commit files touched by this commit
yuri search for other commits by this committer
Add CONFLICT between science/py-chempy and science/py-pymol
2.4.0
21 May 2020 07:14:37
Revision:536077Original commit files touched by this commit
yuri search for other commits by this committer
science/py-pymol: Update 2.3.0 -> 2.4.0
2.3.0_1
23 Feb 2020 15:25:53
Revision:526925Original commit files touched by this commit
antoine search for other commits by this committer
Deprecate a few ports

With hat:	portmgr
2.3.0_1
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
2.3.0
16 Feb 2019 10:32:12
Revision:493038Original commit files touched by this commit
antoine search for other commits by this committer
Unbreak INDEX
2.3.0
12 Feb 2019 06:52:57
Revision:492761Original commit files touched by this commit
yuri search for other commits by this committer
science/py-pymol: Update 2.2.0 -> 2.3.0

Reported by:	portscout
2.2.0_3
16 Jan 2019 11:13:45
Revision:490472Original commit files touched by this commit
tijl search for other commits by this committer
Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.2.0_2
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
2.2.0_1
22 Nov 2018 20:18:37
Revision:485614Original commit files touched by this commit
tcberner search for other commits by this committer
pyqt: Change install directories for Python flavor support

* PyQt could not be installed for multiple Python versions at
  the same time, as there were conflicting files.

  This patch creates Python-version versioned directories for
  all these, and further installs binaries with a version number.

* Note, there might be some hickups for software that depends on
  on of the .so's provided by PyQt5, which might not be found
  anymore autmotically, and maybe need some LD-flaggery.

* Update PyQt5 to 5.10.1

* Mark www/py-qt5-webengine broken. It is unforuntately no longer
  compatible with the old qt5-webengine-5.9.4 we ship.

PR:		232745
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D8714
2.2.0
17 Sep 2018 20:48:45
Revision:479957Original commit files touched by this commit
yuri search for other commits by this committer
science/py-pymol: Update 2.1.0 -> 2.2.0

Moved to GitHub.
Also update WWW.
2.1.0_3
29 Jul 2018 22:18:46
Revision:475857Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
2.1.0_2
20 Jun 2018 17:05:44
Revision:472884Original commit files touched by this commit
mat search for other commits by this committer
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
2.1.0_2
22 Apr 2018 18:29:51
Revision:468048Original commit files touched by this commit
sunpoet search for other commits by this committer
Move devel/py-msgpack-python to devel/py-msgpack

- Update to 0.5.6
- Update pkg-descr
- Update WWW

Changes:	https://github.com/msgpack/msgpack-python/blob/master/ChangeLog.rst
2.1.0_1
22 Mar 2018 05:48:25
Revision:465257Original commit files touched by this commit
yuri search for other commits by this committer
science/py-pymol: Add GUI options QT5 and TK; Add missing dependency NUMPY

Now QT5 is the default, while Tk is still available as a second choice.
2.1.0
20 Mar 2018 07:53:14
Revision:465071Original commit files touched by this commit
yuri search for other commits by this committer
science/py-pymol: Update to 2.1.0

Release notes:
https://pymol.org/dokuwiki/?id=media:new21

Port changes:
* Fixed shebang in bin/pymol
* Misc minor changes

Reported by:	portscout
1.8.6.0
19 Dec 2017 20:06:09
Revision:456764Original commit files touched by this commit
antoine search for other commits by this committer
- Canonicalize LIB_DEPENDS
- Limit to python 2.7, the dependencies and the plist are not compatible
  with python3
- Cleanup plist

With hat:	portmgr (poudriere bulk -a broken)
1.8.6.0
19 Dec 2017 19:49:17
Revision:456763Original commit files touched by this commit
yuri search for other commits by this committer
Re-added port: science/py-pymol: OpenGL based molecular visualization system
(existed 2002/08/13-2014/09/01, deleted in r366862)

Approved by:	adamw (mentor)
Differential Revision:	https://reviews.freebsd.org/D12902

Number of commits found: 39