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Port details
py-pyteomics Python modules for proteomics data analysis
4.5 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.4.2_1Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2015-11-02 09:24:59
Last Update: 2021-09-21 22:23:38
Commit Hash: 1559256
Also Listed In: python
License: APACHE20
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}pyteomics>0:science/py-pyteomics@${PY_FLAVOR}
To install the port: cd /usr/ports/science/py-pyteomics/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-pyteomics
  • pkg install py38-pyteomics
NOTE: This is a Python port. Instead of py38-pyteomics listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py38-pyteomics
Package flavors (<flavor>: <package>)
  • py38: py38-pyteomics
distinfo:
Packages (timestamps in pop-ups are UTC):
py27-pyteomics
ABIlatestquarterly
FreeBSD:11:aarch643.4.2_14.3.2
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch643.4.2_1-
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py37-pyteomics
ABIlatestquarterly
FreeBSD:11:aarch64-4.3.2
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-4.4.1
FreeBSD:13:aarch644.4.0-
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc644.4.1-
 
py38-pyteomics
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd644.54.4.2_1
FreeBSD:11:armv6--
FreeBSD:11:i3864.54.4.2_1
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-4.5
FreeBSD:12:amd644.54.5
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3864.54.5
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-4.5
FreeBSD:13:amd644.54.5
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3864.54.5
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch644.5-
FreeBSD:14:amd644.5-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3864.5-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py38-setuptools>0 : devel/py-setuptools@py38
  2. python3.8 : lang/python38
Runtime dependencies:
  1. py38-pandas>=0,1 : math/py-pandas@py38
  2. py38-matplotlib>=0 : math/py-matplotlib@py38
  3. py38-numpy>=0,1 : math/py-numpy@py38
  4. py38-lxml>=0 : devel/py-lxml@py38
  5. py38-sqlalchemy14>=0 : databases/py-sqlalchemy14@py38
  6. py38-lxml>=0 : devel/py-lxml@py38
  7. py38-numpy>=0,1 : math/py-numpy@py38
  8. py38-setuptools>0 : devel/py-setuptools@py38
  9. python3.8 : lang/python38
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/p/pyteomics/
  2. https://pypi.org/packages/source/p/pyteomics/
Collapse this list.
Port Moves
  • port moved here from science/pyteomics on 2015-11-02
    REASON: Renamed to comply with Python ports policy

Number of commits found: 32

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
21 Sep 2021 22:23:38
 files touched by this commit commit hash:15592565d32611ecddb41c57d4e8ce4724b5c682  4.5
sunpoet search for other commits by this committer
science/py-pyteomics: Update to 4.5

Changes:	https://github.com/levitsky/pyteomics/releases
		https://pyteomics.readthedocs.io/en/latest/changelog.html
11 May 2021 21:47:18
 files touched by this commit commit hash:75634f6ca06c803b74baa343a098b85586c3f434  4.4.2_1
sunpoet search for other commits by this committer
science/py-pyteomics: Change RUN_DEPENDS from py-sqlalchemy13 to py-sqlalchemy14

- Bump PORTREVISION for dependency change
10 May 2021 20:13:20
 files touched by this commit commit hash:1d44af58980136b882d146f21d8776943a14c5eb  4.4.2
thierry search for other commits by this committer
math/py-matplotlib: chase minimum Python version in dependent ports

Since the previous update changed USES=python from 3.6+ to 3.7+, all
dependent ports must have USES=python:3.7+ as well, otherwise it breaks
the @py36 flavor.

PR:		255347
Reported by:	sunpoet
02 May 2021 19:45:37
 files touched by this commit commit hash:4fc3b667552d62a56d966ca787959abdf0a2c625  4.4.2
sunpoet search for other commits by this committer
science/py-pyteomics: Remove PYNUMPY
18 Apr 2021 05:44:06
 files touched by this commit commit hash:9da68190d579a3e2e8cb04ddacd7de73648df512  4.4.2
sunpoet search for other commits by this committer
science/py-pyteomics: Update to 4.4.2

Changes:	https://github.com/levitsky/pyteomics/releases
		https://pyteomics.readthedocs.io/en/latest/changelog.html
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  4.4.1
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  4.4.1
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
26 Jan 2021 17:37:47
Original commit files touched by this commit Revision:562834  4.4.1
sunpoet search for other commits by this committer
Update to 4.4.1

Changes:	https://github.com/levitsky/pyteomics/releases
		https://pyteomics.readthedocs.io/en/latest/changelog.html
21 Nov 2020 09:20:52
Original commit files touched by this commit Revision:555859  4.4.0
sunpoet search for other commits by this committer
Update to 4.4.0

Changes:	https://github.com/levitsky/pyteomics/releases
		https://pyteomics.readthedocs.io/en/latest/changelog.html
02 Oct 2020 07:31:12
Original commit files touched by this commit Revision:550922  4.3.3
sunpoet search for other commits by this committer
Update to 4.3.3

Changes:	https://github.com/levitsky/pyteomics/releases
		https://pyteomics.readthedocs.io/en/latest/changelog.html
19 Sep 2020 14:15:43
Original commit files touched by this commit Revision:548989  4.3.2
antoine search for other commits by this committer
Unbreak bulk -a
05 Sep 2020 21:32:55
Original commit files touched by this commit Revision:547724  4.3.2
sunpoet search for other commits by this committer
Update version requirement of RUN_DEPENDS
21 May 2020 20:44:52
Original commit files touched by this commit Revision:536157  4.3.2
sunpoet search for other commits by this committer
Add DF, GRAPHICS, TDA, UNIMOD and XML options
21 May 2020 04:58:55
Original commit files touched by this commit Revision:536054  4.3.2
sunpoet search for other commits by this committer
Update to 4.3.2

- Update WWW

Changes:	https://github.com/levitsky/pyteomics/releases
		https://pyteomics.readthedocs.io/en/latest/changelog.html
01 Mar 2020 06:49:00
Original commit files touched by this commit Revision:527512  4.2
sunpoet search for other commits by this committer
Update to 4.2

Changes:	https://bitbucket.org/levitsky/pyteomics/src/default/CHANGELOG
		https://pyteomics.readthedocs.io/en/latest/changelog.html
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  4.1.2_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
09 Jun 2019 16:52:36
Original commit files touched by this commit Revision:503837  4.1.2
sunpoet search for other commits by this committer
Update to 4.1.2

Changes:	https://bitbucket.org/levitsky/pyteomics/src/default/CHANGELOG
		https://pyteomics.readthedocs.io/en/latest/changelog.html
25 May 2019 22:03:26
Original commit files touched by this commit Revision:502648  4.1.1
sunpoet search for other commits by this committer
Update to 4.1.1

Changes:	https://pyteomics.readthedocs.io/en/latest/changelog.html
18 Apr 2019 18:00:53
Original commit files touched by this commit Revision:499298  4.1
sunpoet search for other commits by this committer
Update to 4.1

- Update pkg-descr
- Update WWW
- Take maintainership

Changes:	https://pyteomics.readthedocs.io/en/latest/changelog.html
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  3.5.1_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
29 Nov 2018 21:58:22
Original commit files touched by this commit Revision:486213  3.5.1
makc search for other commits by this committer
science/py-pyteomics:
- Update to 3.5.1 and enable for all Python versions
20 Jun 2018 17:05:44
Original commit files touched by this commit Revision:472884  3.4.2_1
mat search for other commits by this committer
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
25 Apr 2018 16:42:38
Original commit files touched by this commit Revision:468282  3.4.2_1
amdmi3 search for other commits by this committer
Switch all pypi.python.org WWWs to a new PyPi home pypi.org where
they now redirect to anyway. All new urls checked to return 200,
I've fixed a couple of them in the process.

Approved by:	portmgr blanket, mat
10 Mar 2018 17:46:06
Original commit files touched by this commit Revision:464084  3.4.2_1
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
30 Nov 2017 15:50:34
Original commit files touched by this commit Revision:455210  3.4.2  Sanity Test Failure
mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
02 Jul 2017 16:10:25
Original commit files touched by this commit Revision:444893  3.4.2
sunpoet search for other commits by this committer
Update to 3.4.2

- Sort USE_PYTHON

Changes:	https://bitbucket.org/levitsky/pyteomics/src/default/CHANGELOG
22 Feb 2017 01:45:24
Original commit files touched by this commit Revision:434558  3.4.1
vanilla search for other commits by this committer
Update to 3.4.1.
01 Dec 2016 23:52:39
Original commit files touched by this commit Revision:427536  3.4
jhale search for other commits by this committer
Update to 3.4
Add LICENSE_FILE

PR:		214198
Submitted by:	Jochen Neumeister <joneum@bsdproject.de>
07 Nov 2016 12:24:07
Original commit files touched by this commit Revision:425611  2.4.0_1
amdmi3 search for other commits by this committer
- Add LICENSE
- Add NO_ARCH
20 Oct 2016 15:58:13
Original commit files touched by this commit Revision:424339  2.4.0_1
rakuco search for other commits by this committer
Reassign makc's ports back to the pool.

See "Maintainer Reset" in
https://www.freebsd.org/portmgr/policies_contributors.html. makc's last commit
was in March 31st (r412218), and his ports have been timing out since at least
July (r418155).

I also emailed him 2 weeks ago and have received no response so far.
01 Apr 2016 14:25:18
Original commit files touched by this commit Revision:412349  2.4.0_1
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
02 Nov 2015 09:24:50
Original commit files touched by this commit Revision:400643  2.4.0_1
makc search for other commits by this committer
Rename my ports to comply with Python ports policy

Requested by:	koobs

Number of commits found: 32