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Port details
py-rmf Library to support reading and writing of Rich Molecular Format files
1.6.1 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.6.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-01 06:49:32
Last Update: 2024-05-25 04:12:09
Commit Hash: 3a90aec
Also Listed In: graphics
License: APACHE20
WWW:
https://integrativemodeling.org/rmf/
Description:
The Python binding for Rich Molecular Format (RMF) file format library storing hierarchical molecular data (such as atomic or coarse grained representations of proteins), along with markup, including geometry and score data.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}rmf>0:science/py-rmf@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-rmf/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-rmf
  • pkg install py39-rmf
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-rmf listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-rmf
Package flavors (<flavor>: <package>)
  • py39: py39-rmf
distinfo:
TIMESTAMP = 1716605218 SHA256 (salilab-rmf-1.6.1_GH0.tar.gz) = abe143e7411b910e5ba863c162b3a23bfdec440cbb1c4909e88727c0e63ad772 SIZE (salilab-rmf-1.6.1_GH0.tar.gz) = 15105898

Packages (timestamps in pop-ups are UTC):
py311-rmf
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.6.11.6.1-1.6.11.6.1---
FreeBSD:13:quarterly1.6.11.6.1-1.6.11.6.1---
FreeBSD:14:latest1.6.11.6.1-1.6.11.6.1---
FreeBSD:14:quarterly-1.6.1--1.6.1---
FreeBSD:15:latest1.6.11.6.1n/a-n/a---
 
py37-rmf
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--1.1_1---1.1_1-
FreeBSD:13:quarterly--------
FreeBSD:14:latest--------
FreeBSD:14:quarterly--------
FreeBSD:15:latest--n/a-n/a---
 
py39-rmf
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly------1.6.01.6.0
FreeBSD:14:latest--------
FreeBSD:14:quarterly1.6.0--1.6.0--1.6.01.6.0
FreeBSD:15:latest--n/a1.6.0n/a-1.6.01.6.0
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. swig : devel/swig
  2. cmake : devel/cmake-core
  3. ninja : devel/ninja
  4. python3.9 : lang/python39
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. python3.9 : lang/python39
Library dependencies:
  1. libRMF.so : science/rmf
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
science_py-rmf
USES:
cmake compiler:c++11-lang localbase:ldflags python shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/salilab/rmf/tar.gz/1.6.1?dummy=/
Collapse this list.

Number of commits found: 24

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.6.1
25 May 2024 04:12:09
commit hash: 3a90aeca8c1eef08c7b44cd6143db5339a87e4dbcommit hash: 3a90aeca8c1eef08c7b44cd6143db5339a87e4dbcommit hash: 3a90aeca8c1eef08c7b44cd6143db5339a87e4dbcommit hash: 3a90aeca8c1eef08c7b44cd6143db5339a87e4db files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}rmf: update 1.6.0 → 1.6.1

Reported by:	portscout
1.6.0
15 Dec 2023 22:23:55
commit hash: f9e52322b6409362629c68883f0c9683476b9893commit hash: f9e52322b6409362629c68883f0c9683476b9893commit hash: f9e52322b6409362629c68883f0c9683476b9893commit hash: f9e52322b6409362629c68883f0c9683476b9893 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}rmf: update 1.5.1 → 1.6.0

Reported by:	portscout
1.5.1
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
1.5.1
18 Jun 2023 18:23:36
commit hash: ef4773459bf85743703a0d945f811e378037a88bcommit hash: ef4773459bf85743703a0d945f811e378037a88bcommit hash: ef4773459bf85743703a0d945f811e378037a88bcommit hash: ef4773459bf85743703a0d945f811e378037a88b files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}rmf: Update 1.5.0 → 1.5.1

Reported by:	portscout
1.5.0_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
1.5.0
24 Mar 2023 06:06:11
commit hash: 508850cdf9dde14055f5afb52b5738d1bb00b82fcommit hash: 508850cdf9dde14055f5afb52b5738d1bb00b82fcommit hash: 508850cdf9dde14055f5afb52b5738d1bb00b82fcommit hash: 508850cdf9dde14055f5afb52b5738d1bb00b82f files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}rmf: Update 1.4.1 → 1.5.0

Reported by:	portscout
1.4.1
26 Dec 2022 06:13:14
commit hash: 32928d2f757653556fa2ea546d49b30fbfcefae7commit hash: 32928d2f757653556fa2ea546d49b30fbfcefae7commit hash: 32928d2f757653556fa2ea546d49b30fbfcefae7commit hash: 32928d2f757653556fa2ea546d49b30fbfcefae7 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}rmf: Update 1.4 -> 1.4.1

Reported by:	portscout
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.4_1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.4_1
12 Aug 2022 14:46:53
commit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5edcommit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5edcommit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5edcommit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5ed files touched by this commit
Dima Panov (fluffy) search for other commits by this committer
*/*: bump all consumers after recent boost upgrade
1.4
11 Mar 2022 16:59:47
commit hash: 955f781731cce9cb05883f15865c1a5d91928305commit hash: 955f781731cce9cb05883f15865c1a5d91928305commit hash: 955f781731cce9cb05883f15865c1a5d91928305commit hash: 955f781731cce9cb05883f15865c1a5d91928305 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}rmf: Update 1.3.1 -> 1.4

Reported by:	portscout
1.3.1
30 Dec 2021 05:15:51
commit hash: 8c4c033f45dace2914d940885df1338550c50f88commit hash: 8c4c033f45dace2914d940885df1338550c50f88commit hash: 8c4c033f45dace2914d940885df1338550c50f88commit hash: 8c4c033f45dace2914d940885df1338550c50f88 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}rmf: Update 1.3 -> 1.3.1
1.3
19 Oct 2021 08:36:47
commit hash: ce1af7fdc2cde4dc409a344a4210a3af581ccd2dcommit hash: ce1af7fdc2cde4dc409a344a4210a3af581ccd2dcommit hash: ce1af7fdc2cde4dc409a344a4210a3af581ccd2dcommit hash: ce1af7fdc2cde4dc409a344a4210a3af581ccd2d files touched by this commit
Tobias Kortkamp (tobik) search for other commits by this committer
*: apply refactor.remove-consecutive-empty-lines

Submitted by:	portedit
1.3
22 Apr 2021 08:05:45
commit hash: bb73f06035e51e30c63af81a8ab575231c3f623acommit hash: bb73f06035e51e30c63af81a8ab575231c3f623acommit hash: bb73f06035e51e30c63af81a8ab575231c3f623acommit hash: bb73f06035e51e30c63af81a8ab575231c3f623a files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-rmf: Update 1.2 -> 1.3

Reported by:	portscout
1.2
21 Apr 2021 08:32:09
commit hash: 227a7ec58e072e722cf20e23173e1fcb7a504a8acommit hash: 227a7ec58e072e722cf20e23173e1fcb7a504a8acommit hash: 227a7ec58e072e722cf20e23173e1fcb7a504a8acommit hash: 227a7ec58e072e722cf20e23173e1fcb7a504a8a files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-rmf: Update 1.1 -> 1.2

Reported by:	portscout
1.1_1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
1.1_1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.1_1
28 Dec 2020 23:02:15
Revision:559531Original commit files touched by this commit
antoine search for other commits by this committer
Drop python 2.7 support from a few ports

With hat:	portmgr
1.1_1
17 Jun 2020 18:17:45
Revision:539491Original commit files touched by this commit
sunpoet search for other commits by this committer
Move devel/swig30 to devel/swig and update to 4.0.1

- Do not silence installation message
- Update dependent ports:
  - Fix build with swig 4.0.1
  - Update *_DEPENDS
  - Remove BINARY_ALIAS

Changes:	http://www.swig.org/news.php
PR:		246613
Exp-run by:	antoine
1.1_1
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
1.1
12 Jan 2019 23:32:10
Revision:490089Original commit files touched by this commit
linimon search for other commits by this committer
This port requires USES=compiler:c++11-lang to build on GCC-based
architectures.

PR:		234355
Submitted by:	Piotr Kubaj
Approved by:	maintainer
1.1
25 Dec 2018 20:25:40
Revision:488341Original commit files touched by this commit
tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
1.1
30 Aug 2018 17:34:27
Revision:478474Original commit files touched by this commit
yuri search for other commits by this committer
science/py-rmf: Correct version

It is 1.1, despite git not being able to produce a 1.1-based tag.
Therefore, leaving GH_TAGNAME and setting version to 1.1

Reported by:	portscout
g20180614
01 Jul 2018 05:22:27
Revision:473652Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/py-rmf: Library to support reading and writing of Rich
Molecular Format files

Number of commits found: 24