Port details
py-affine-gaps JIT-compiled string edit-distances
0.2.4 textproc Σ 0.2.4Version of this port present on the latest quarterly branch. Maintainer: yuri@FreeBSD.org Port Added: 2026-09-14 18:54:28Last Update: 2026-09-14 18:52:04Commit Hash: 2a722c0 Also Listed In: python License: APACHE20WWW: https://github.com/ashvardanian/affine-gaps Description: # Affine Gaps is a single-file Numba-accelerated Python implementation of
Gotoh affine gap penalty extensions for the Needleman-Wunsch and
Smith-Waterman algorithms used for global and local sequence alignment
in bioinformatics.
It includes command-line and Python interfaces for computing optimal
alignments and alignment scores. Manual pages: # FreshPorts has no man page information for this port.
pkg-plist: make generate-plist # There is no configure plist information for this port. USE_RC_SUBR (Service Scripts)
no SUBR information found for this port
Dependency lines :
${PYTHON_PKGNAMEPREFIX}affine-gaps>0:textproc/py-affine-gaps@${PY_FLAVOR} To install the port : # cd /usr/ports/textproc/py-affine-gaps/ && make install clean To add the package , run one of these commands: pkg install textproc/py-affine-gaps pkg install py312-affine-gaps py312-affine-gaps listed in the above command, you can pick from the names under the Packages section.PKGNAME: py312-affine-gaps Package flavors (<flavor>: <package> ) # distinfo: # TIMESTAMP = 1788910021
SHA256 (affine_gaps-0.2.4.tar.gz) = 2c85685fc82f3c8a610522e07e56e031f3f2985ab96f5b708ebf8db8cf342de8
SIZE (affine_gaps-0.2.4.tar.gz) = 22505
Packages (timestamps in pop-ups are UTC): #
Dependencies # NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered. Build dependencies: #
py312-hatchling>0 : devel/py-hatchling@py312 python3.12 : lang/python312 py312-build>=0 : devel/py-build@py312 py312-installer>=0 : devel/py-installer@py312
Test dependencies: #
py312-biopython>0 : biology/py-biopython@py312 py312-pytest-repeat>0 : devel/py-pytest-repeat@py312 py312-stringzilla>0 : devel/py-stringzilla@py312 py312-pytest>=7,1 : devel/py-pytest@py312 python3.12 : lang/python312
Runtime dependencies: #
py312-numpy>0 : math/py-numpy@py312 py312-colorama>0 : devel/py-colorama@py312 py312-numba>0 : devel/py-numba@py312 python3.12 : lang/python312
This port is required by: # for Test #
devel/py-stringzilla Configuration Options : # No options to configure Options name : # textproc_py-affine-gaps USES: # python
pkg-message: # FreshPorts was unable to extract/find any pkg message Master Sites: #
Number of commits found: 1 #
Commit History - (may be incomplete: for full details, see links to repositories near top of page) Commit Credits Log message 0.2.4 Yuri Victorovich (yuri) textproc/py-affine-gaps: New port: JIT-compiled string edit-distances
PR: 298330
Approved by: Baptiste Daroussin <bapt@FreeBSD.org > (on behalf of portmgr@)
Number of commits found: 1
