| Port details |
- py-affine-gaps JIT-compiled string edit-distances
- 0.2.4 textproc
 =0      Package not present on quarterly.This port was created during this quarter. It will be in the next quarterly branch but not the current one. - Maintainer: yuri@FreeBSD.org
- Port Added: 2026-09-14 18:54:28
- Last Update: 2026-09-14 18:52:04
- Commit Hash: 2a722c0
- Also Listed In: python
- License: APACHE20
- WWW:
- https://github.com/ashvardanian/affine-gaps
- Description:
- Affine Gaps is a single-file Numba-accelerated Python implementation of
Gotoh affine gap penalty extensions for the Needleman-Wunsch and
Smith-Waterman algorithms used for global and local sequence alignment
in bioinformatics.
It includes command-line and Python interfaces for computing optimal
alignments and alignment scores.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- USE_RC_SUBR (Service Scripts)
- no SUBR information found for this port
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}affine-gaps>0:textproc/py-affine-gaps@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/textproc/py-affine-gaps/ && make install clean
- To add the package, run one of these commands:
- pkg install textproc/py-affine-gaps
- pkg install py312-affine-gaps
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py312-affine-gaps listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py312-affine-gaps
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1788910021
SHA256 (affine_gaps-0.2.4.tar.gz) = 2c85685fc82f3c8a610522e07e56e031f3f2985ab96f5b708ebf8db8cf342de8
SIZE (affine_gaps-0.2.4.tar.gz) = 22505
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py312-hatchling>0 : devel/py-hatchling@py312
- python3.12 : lang/python312
- py312-build>=0 : devel/py-build@py312
- py312-installer>=0 : devel/py-installer@py312
- Test dependencies:
-
- py312-biopython>0 : biology/py-biopython@py312
- py312-pytest-repeat>0 : devel/py-pytest-repeat@py312
- py312-stringzilla>0 : devel/py-stringzilla@py312
- py312-pytest>=7,1 : devel/py-pytest@py312
- python3.12 : lang/python312
- Runtime dependencies:
-
- py312-numpy>0 : math/py-numpy@py312
- py312-colorama>0 : devel/py-colorama@py312
- py312-numba>0 : devel/py-numba@py312
- python3.12 : lang/python312
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- textproc_py-affine-gaps
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 1
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
0.2.4
14 Sep 2026 18:52:04
 |
Yuri Victorovich (yuri) |
textproc/py-affine-gaps: New port: JIT-compiled string edit-distances
PR: 298330
Approved by: Baptiste Daroussin <bapt@FreeBSD.org> (on behalf of portmgr@) |
Number of commits found: 1
|
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