Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

kmcp Accurate metagenomic profiling & fast large-scale genome searching

0.9.1_4 0.9.4_26Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-04-08 16:02:42

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• kmcp>0:biology/kmcp

ncbi-entrez-direct Access to the NCBI's suite of interconnected databases

14.9.20210423_14 14.9.20210423_42Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2023-04-08 16:02:42

Also Listed In: perl5

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-entrez-direct>0:biology/ncbi-entrez-direct

phyml Simple, fast, and accurate algorithm to estimate large phylogenies

3.3.20220408_1,1 3.3.20220408_1,1Version of this port present on the latest quarterly branch.

There is no maintainer for this port.

Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: 2023-05-08 08:30:28

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• phyml>0:biology/phyml

seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation

2.4.0_2 2.11.0_7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-04-08 16:02:42

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• seqkit>0:biology/seqkit

taxonkit Practical and efficient NCBI taxonomy toolkit

0.14.1_5 0.19.0_17Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-04-08 16:02:42

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• taxonkit>0:biology/taxonkit

unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers

0.19.1_6 0.20.0_21Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-04-08 16:02:42

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• unikmer>0:biology/unikmer