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Port details on branch 2022Q3
biolibc-tools High-performance bioinformatics tools based on biolibc
0.1.3_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.1.3_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-08-14 01:57:30
Last Update: 2022-08-13 18:54:30
Commit Hash: b5eed57
License: BSD2CLAUSE
WWW:
https://github.com/auerlab/biolibc-tools
Description:
Biolibc-tools is a collection of simple fast, memory-efficient, programs for processing biological data. These are simple programs built on biolibc that are not complex enough to warrant a separate project. WWW: https://github.com/auerlab/biolibc-tools
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (33 items)
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  1. /usr/local/share/licenses/biolibc-tools-0.1.3_1/catalog.mk
  2. /usr/local/share/licenses/biolibc-tools-0.1.3_1/LICENSE
  3. /usr/local/share/licenses/biolibc-tools-0.1.3_1/BSD2CLAUSE
  4. bin/blt
  5. libexec/biolibc-tools/chrom-lens
  6. libexec/biolibc-tools/ensemblid2gene
  7. libexec/biolibc-tools/extract-seq
  8. libexec/biolibc-tools/fasta2seq
  9. libexec/biolibc-tools/fastq-derep.sh
  10. libexec/biolibc-tools/fastx-derep
  11. libexec/biolibc-tools/fastx-stats
  12. libexec/biolibc-tools/fastx2tsv
  13. libexec/biolibc-tools/find-orfs
  14. libexec/biolibc-tools/gff2bed
  15. libexec/biolibc-tools/uniq-seqs.awk
  16. libexec/biolibc-tools/vcf-downsample
  17. libexec/biolibc-tools/vcf-search
  18. man/man1/blt-chrom-lens.1.gz
  19. man/man1/blt-ensemblid2gene.1.gz
  20. man/man1/blt-extract-seq.1.gz
  21. man/man1/blt-fasta2seq.1.gz
  22. man/man1/blt-fastq-derep.sh.1.gz
  23. man/man1/blt-fastx-derep.1.gz
  24. man/man1/blt-fastx-stats.1.gz
  25. man/man1/blt-fastx2tsv.1.gz
  26. man/man1/blt-find-orfs.1.gz
  27. man/man1/blt-gff2bed.1.gz
  28. man/man1/blt-vcf-downsample.1.gz
  29. man/man1/blt-vcf-search.1.gz
  30. man/man1/blt.1.gz
  31. @owner
  32. @group
  33. @mode
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USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • biolibc-tools>0:biology/biolibc-tools
To install the port:
cd /usr/ports/biology/biolibc-tools/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/biolibc-tools
  • pkg install biolibc-tools
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: biolibc-tools
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1654951264 SHA256 (auerlab-biolibc-tools-0.1.3_GH0.tar.gz) = 0d5d983ea84e2aa8b23a4954b06f0f7b2eee033b570bf593d75a1196989b985e SIZE (auerlab-biolibc-tools-0.1.3_GH0.tar.gz) = 27735

Packages (timestamps in pop-ups are UTC):
biolibc-tools
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.1.50.1.5-0.1.50.1.5---
FreeBSD:13:quarterly0.1.50.1.50.1.4.60.1.50.1.50.1.4.130.1.4.130.1.4.13
FreeBSD:14:latest0.1.50.1.50.1.4.10.1.50.1.50.1.4.6-0.1.4.6
FreeBSD:14:quarterly0.1.50.1.5-0.1.50.1.50.1.4.130.1.4.130.1.4.13
FreeBSD:15:latest0.1.50.1.5n/a0.1.5n/a0.1.4.130.1.4.130.1.4.13
FreeBSD:15:quarterly--n/a-n/a---
FreeBSD:16:latest--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. uthash>0 : devel/uthash
Library dependencies:
  1. libbiolibc.so : biology/biolibc
  2. libxtend.so : devel/libxtend
  3. libxxhash.so : devel/xxhash
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_biolibc-tools
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/auerlab/biolibc-tools/tar.gz/0.1.3?dummy=/
Collapse this list.

Number of commits found: 1

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.1.3_1
13 Aug 2022 18:54:30
commit hash: b5eed5731a9235d11ae5f90ee15a4bf7f6532d62commit hash: b5eed5731a9235d11ae5f90ee15a4bf7f6532d62commit hash: b5eed5731a9235d11ae5f90ee15a4bf7f6532d62commit hash: b5eed5731a9235d11ae5f90ee15a4bf7f6532d62 files touched by this commit
Matthias Andree (mandree) search for other commits by this committer
*: bump PORTREVISION of devel/xxhash users.

Number of commits found: 1