| Port details on branch 2022Q3 |
- biolibc Low-level high-performance bioinformatics library
- 0.2.7 biology
 =2      0.2.7Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2021-03-21 15:10:53
- Last Update: 2025-04-26 20:35:36
- Commit Hash: f680350
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py311-PyOpenGL, p5-Sane
- License: BSD2CLAUSE
- WWW:
- https://github.com/auerlab/biolibc
- Description:
- Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data. Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications. These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.
  ¦  ¦  ¦  ¦ 
- Manual pages:
-
- pkg-plist: as obtained via:
make generate-plist - USE_RC_SUBR (Service Scripts)
- no SUBR information found for this port
- Dependency lines:
-
- biolibc>0:biology/biolibc
- To install the port:
- cd /usr/ports/biology/biolibc/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/biolibc
- pkg install biolibc
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: biolibc
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1745681520
SHA256 (auerlab-biolibc-0.2.7_GH0.tar.gz) = d01f8e200a92ae893e69a6e2ed4d7e3939bd2559d1dabe87b9150496eba65cbe
SIZE (auerlab-biolibc-0.2.7_GH0.tar.gz) = 149543
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Library dependencies:
-
- libxtend.so : devel/libxtend
- This port is required by:
- for Build
-
- biology/fastq-trim
- for Libraries
-
- biology/ad2vcf
- biology/biolibc-tools
- biology/fasda
- biology/fastq-trim
- biology/peak-classifier
- biology/vcf-split
- biology/vcf2hap
Configuration Options:- No options to configure
- Options name:
- biology_biolibc
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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