Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

biolibc-tools High-performance bioinformatics tools based on biolibc

0.1.3_1 0.1.3_1Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2022-08-14 01:57:30

License: BSD2CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• biolibc-tools>0:biology/biolibc-tools

cufflinks Cufflinks assembles transcripts, estimates their abundance, etc

2.2.1.89_2 2.2.1.89_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 00:56:00

License: BSL

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• cufflinks>0:biology/cufflinks

mmseqs2 Ultra fast and sensitive sequence search and clustering suite

13.45111_2 13.45111_2Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2022-08-14 00:33:15

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• MMseqs2>0:biology/mmseqs2

molden Display molecular orbitals and electron densities in 2D and 3D

6.7,1 6.7,1Version of this port present on the latest quarterly branch.

Maintainer: jmd@FreeBSD.org

Port Added: 2022-08-14 00:05:39

License: Molden

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• molden>0:biology/molden

ncbi-cxx-toolkit NCBI C++ Toolkit

26.0.1 26.0.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 01:21:34

Also Listed In: devel science

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-cxx-toolkit>0:biology/ncbi-cxx-toolkit

ngs-sdk Tools and libraries for using data in the INSDC Sequence Read Archives

2.11.2 2.11.2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 00:30:54

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ngs-sdk>0:biology/ngs-sdk

py-pysam Python module for reading, manipulating and writing genomic data sets

0.19.1_1 0.19.1_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 00:04:10

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pysam>0:biology/py-pysam@${PY_FLAVOR}

star Spliced Transcripts Alignment to a Reference

2.7.9.a 2.7.9.aVersion of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2022-08-14 00:38:37

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• rna-STAR>0:biology/star

ugene Integrated bioinformatics toolkit

40.1 40.1Version of this port present on the latest quarterly branch.

Maintainer: h2+fbsdports@fsfe.org

Port Added: 2022-08-14 01:14:52

Also Listed In: science

License: GPLv2+

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ugene>0:biology/ugene