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Port details
emboss Collection of open source tools for genetic sequence analysis
6.6.0_7 biology on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 6.6.0_7Version of this port present on the latest quarterly branch.
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2000-07-31 16:13:54
Last Update: 2023-12-29 18:24:39
Commit Hash: ee6c86a
People watching this port, also watch:: graphviz
License: GPLv2
WWW:
http://www.emboss.org/
Description:
The European Molecular Biology Open Software Suite (EMBOSS) is a comprehensive set (about 100) of open source tools for genetic sequence analysis. EMBOSS is produced by the European Molecular Biology Network (EMBnet - http://www.embnet.org/). All EMBOSS tools are all built around the same set of core libraries - AJAX and NUCLEUS - and therefore share a unified user interface, have similar "look and feel", and implement a uniform sequence addressing methodology. The various components of EMBOSS are distributed under the GPL, except the core libraries which are under the LGPL. EMBASSY packages are third party applications which have been integrated with the EMBOSS suite, but which are not included in the base EMBOSS distribution for licensing or other reasons. The EMBASSY packages live in the biology/embassy port.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (2325 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/emboss/share/licenses/emboss-6.6.0_7/catalog.mk
  3. /usr/local/emboss/share/licenses/emboss-6.6.0_7/LICENSE
  4. /usr/local/emboss/share/licenses/emboss-6.6.0_7/GPLv2
  5. bin/aaindexextract
  6. bin/abiview
  7. bin/acdc
  8. bin/acdgalaxy
  9. bin/acdlog
  10. bin/acdpretty
  11. bin/acdtable
  12. bin/acdtrace
  13. bin/acdvalid
  14. bin/aligncopy
  15. bin/aligncopypair
  16. bin/antigenic
  17. bin/assemblyget
  18. bin/backtranambig
  19. bin/backtranseq
  20. bin/banana
  21. bin/biosed
  22. bin/btwisted
  23. bin/cachedas
  24. bin/cachedbfetch
  25. bin/cacheebeyesearch
  26. bin/cacheensembl
  27. bin/cai
  28. bin/chaos
  29. bin/charge
  30. bin/checktrans
  31. bin/chips
  32. bin/cirdna
  33. bin/codcmp
  34. bin/codcopy
  35. bin/coderet
  36. bin/compseq
  37. bin/cons
  38. bin/consambig
  39. bin/cpgplot
  40. bin/cpgreport
  41. bin/cusp
  42. bin/cutgextract
  43. bin/cutseq
  44. bin/dan
  45. bin/dbiblast
  46. bin/dbifasta
  47. bin/dbiflat
  48. bin/dbigcg
  49. bin/dbtell
  50. bin/dbxcompress
  51. bin/dbxedam
  52. bin/dbxfasta
  53. bin/dbxflat
  54. bin/dbxgcg
  55. bin/dbxobo
  56. bin/dbxreport
  57. bin/dbxresource
  58. bin/dbxstat
  59. bin/dbxtax
  60. bin/dbxuncompress
  61. bin/degapseq
  62. bin/density
  63. bin/descseq
  64. bin/diffseq
  65. bin/distmat
  66. bin/dotmatcher
  67. bin/dotpath
  68. bin/dottup
  69. bin/dreg
  70. bin/drfinddata
  71. bin/drfindformat
  72. bin/drfindid
  73. bin/drfindresource
  74. bin/drget
  75. bin/drtext
  76. bin/edamdef
  77. bin/edamhasinput
  78. bin/edamhasoutput
  79. bin/edamisformat
  80. bin/edamisid
  81. bin/edamname
  82. bin/edialign
  83. bin/einverted
  84. /usr/local/bin/emboss
  85. /usr/local/bin/emboss-shell
  86. bin/embossdata
  87. bin/embossupdate
  88. bin/embossversion
  89. bin/emma
  90. bin/emowse
  91. bin/entret
  92. bin/epestfind
  93. bin/eprimer3
  94. bin/eprimer32
  95. bin/equicktandem
  96. bin/est2genome
  97. bin/etandem
  98. bin/extractalign
  99. bin/extractfeat
  100. bin/extractseq
  101. bin/featcopy
  102. bin/featmerge
  103. bin/featreport
  104. bin/feattext
  105. bin/findkm
  106. bin/freak
  107. bin/fuzznuc
  108. bin/fuzzpro
  109. bin/fuzztran
  110. bin/garnier
  111. bin/geecee
  112. bin/getorf
  113. bin/godef
  114. bin/goname
  115. bin/helixturnhelix
  116. bin/hmoment
  117. bin/iep
  118. bin/infoalign
  119. bin/infoassembly
  120. bin/infobase
  121. bin/inforesidue
  122. bin/infoseq
  123. bin/isochore
  124. bin/jaspextract
  125. bin/jaspscan
  126. bin/jembossctl
  127. bin/lindna
  128. bin/listor
  129. bin/makenucseq
  130. bin/makeprotseq
  131. bin/marscan
  132. bin/maskambignuc
  133. bin/maskambigprot
  134. bin/maskfeat
  135. bin/maskseq
  136. bin/matcher
  137. bin/megamerger
  138. bin/merger
  139. bin/msbar
  140. bin/mwcontam
  141. bin/mwfilter
  142. bin/needle
  143. bin/needleall
  144. bin/newcpgreport
  145. bin/newcpgseek
  146. bin/newseq
  147. bin/nohtml
  148. bin/noreturn
  149. bin/nospace
  150. bin/notab
  151. bin/notseq
  152. bin/nthseq
  153. bin/nthseqset
  154. bin/octanol
  155. bin/oddcomp
  156. bin/ontocount
  157. bin/ontoget
  158. bin/ontogetcommon
  159. bin/ontogetdown
  160. bin/ontogetobsolete
  161. bin/ontogetroot
  162. bin/ontogetsibs
  163. bin/ontogetup
  164. bin/ontoisobsolete
  165. bin/ontotext
  166. bin/palindrome
  167. bin/pasteseq
  168. bin/patmatdb
  169. bin/patmatmotifs
  170. bin/pepcoil
  171. bin/pepdigest
  172. bin/pepinfo
  173. bin/pepnet
  174. bin/pepstats
  175. bin/pepwheel
  176. bin/pepwindow
  177. bin/pepwindowall
  178. bin/plotcon
  179. bin/plotorf
  180. bin/polydot
  181. bin/preg
  182. bin/prettyplot
  183. bin/prettyseq
  184. bin/primersearch
  185. bin/printsextract
  186. bin/profit
  187. bin/prophecy
  188. bin/prophet
  189. bin/prosextract
  190. bin/pscan
  191. bin/psiphi
  192. bin/rebaseextract
  193. bin/recoder
  194. bin/redata
  195. bin/refseqget
  196. bin/remap
  197. bin/restover
  198. bin/restrict
  199. bin/revseq
  200. bin/runJemboss.sh
  201. bin/seealso
  202. bin/seqcount
  203. bin/seqmatchall
  204. bin/seqret
  205. bin/seqretsetall
  206. bin/seqretsplit
  207. bin/seqxref
  208. bin/seqxrefget
  209. bin/servertell
  210. bin/showalign
  211. bin/showdb
  212. bin/showfeat
  213. bin/showorf
  214. bin/showpep
  215. bin/showserver
  216. bin/showseq
  217. bin/shuffleseq
  218. bin/sigcleave
  219. bin/silent
  220. bin/sirna
  221. bin/sixpack
  222. bin/sizeseq
  223. bin/skipredundant
  224. bin/skipseq
  225. bin/splitsource
  226. bin/splitter
  227. bin/stretcher
  228. bin/stssearch
  229. bin/supermatcher
  230. bin/syco
  231. bin/taxget
  232. bin/taxgetdown
  233. bin/taxgetrank
  234. bin/taxgetspecies
  235. bin/taxgetup
  236. bin/tcode
  237. bin/textget
  238. bin/textsearch
  239. bin/tfextract
  240. bin/tfm
  241. bin/tfscan
  242. bin/tmap
  243. bin/tranalign
  244. bin/transeq
  245. bin/trimest
  246. bin/trimseq
  247. bin/trimspace
  248. bin/twofeat
  249. bin/union
  250. bin/urlget
  251. bin/variationget
  252. bin/vectorstrip
  253. bin/water
  254. bin/whichdb
  255. bin/wobble
  256. bin/wordcount
  257. bin/wordfinder
  258. bin/wordmatch
  259. bin/wossdata
  260. bin/wossinput
  261. bin/wossname
  262. bin/wossoperation
  263. bin/wossoutput
  264. bin/wossparam
  265. bin/wosstopic
  266. bin/xmlget
  267. bin/xmltext
  268. bin/yank
  269. include/ajacd.h
  270. include/ajalign.h
  271. include/ajarch.h
  272. include/ajarr.h
  273. include/ajassem.h
  274. include/ajassemdata.h
  275. include/ajassemdb.h
  276. include/ajassemread.h
  277. include/ajassemwrite.h
  278. include/ajassert.h
  279. include/ajax.h
  280. include/ajbamindex.h
  281. include/ajbase.h
  282. include/ajcall.h
  283. include/ajcigar.h
  284. include/ajcod.h
  285. include/ajdan.h
  286. include/ajdas.h
  287. include/ajdefine.h
  288. include/ajdmx.h
  289. include/ajdom.h
  290. include/ajdomain.h
  291. include/ajexcept.h
  292. include/ajfeat.h
  293. include/ajfeatdata.h
  294. include/ajfeatdb.h
  295. include/ajfeatread.h
  296. include/ajfeatwrite.h
  297. include/ajfile.h
  298. include/ajfiledata.h
  299. include/ajfileio.h
  300. include/ajfmt.h
  301. include/ajftp.h
  302. include/ajgraph.h
  303. include/ajgraphstruct.h
  304. include/ajhist.h
  305. include/ajhttp.h
  306. include/ajindex.h
  307. include/ajjava.h
  308. include/ajlib.h
  309. include/ajlist.h
  310. include/ajmart.h
  311. include/ajmath.h
  312. include/ajmatrices.h
  313. include/ajmem.h
  314. include/ajmess.h
  315. include/ajnam.h
  316. include/ajnexus.h
  317. include/ajobo.h
  318. include/ajobodata.h
  319. include/ajobodb.h
  320. include/ajoboread.h
  321. include/ajobowrite.h
  322. include/ajpat.h
  323. include/ajpdb.h
  324. include/ajpdbio.h
  325. include/ajphylo.h
  326. include/ajquery.h
  327. include/ajquerydata.h
  328. include/ajrange.h
  329. include/ajrefseq.h
  330. include/ajrefseqdata.h
  331. include/ajrefseqdb.h
  332. include/ajrefseqread.h
  333. include/ajrefseqwrite.h
  334. include/ajreg.h
  335. include/ajreport.h
  336. include/ajresource.h
  337. include/ajresourcedata.h
  338. include/ajresourcedb.h
  339. include/ajresourceread.h
  340. include/ajresourcewrite.h
  341. include/ajseq.h
  342. include/ajseqabi.h
  343. include/ajseqbam.h
  344. include/ajseqdata.h
  345. include/ajseqdb.h
  346. include/ajseqread.h
  347. include/ajseqtype.h
  348. include/ajseqwrite.h
  349. include/ajsoap.h
  350. include/ajsort.h
  351. include/ajsql.h
  352. include/ajstr.h
  353. include/ajsys.h
  354. include/ajtable.h
  355. include/ajtagval.h
  356. include/ajtax.h
  357. include/ajtaxdata.h
  358. include/ajtaxdb.h
  359. include/ajtaxread.h
  360. include/ajtaxwrite.h
  361. include/ajtext.h
  362. include/ajtextdata.h
  363. include/ajtextdb.h
  364. include/ajtextread.h
  365. include/ajtextwrite.h
  366. include/ajtime.h
  367. include/ajtranslate.h
  368. include/ajtree.h
  369. include/ajurl.h
  370. include/ajurldata.h
  371. include/ajurldb.h
  372. include/ajurlread.h
  373. include/ajurlwrite.h
  374. include/ajutil.h
  375. include/ajvar.h
  376. include/ajvarbcf.h
  377. include/ajvardata.h
  378. include/ajvardb.h
  379. include/ajvarread.h
  380. include/ajvarwrite.h
  381. include/ajvector.h
  382. include/ajxml.h
  383. include/ajxmldata.h
  384. include/ajxmldb.h
  385. include/ajxmlread.h
  386. include/ajxmlwrite.h
  387. include/eexpat/ascii.h
  388. include/eexpat/asciitab.h
  389. include/eexpat/expat.h
  390. include/eexpat/expat_config.h
  391. include/eexpat/expat_external.h
  392. include/eexpat/expatemboss.h
  393. include/eexpat/iasciitab.h
  394. include/eexpat/internal.h
  395. include/eexpat/latin1tab.h
  396. include/eexpat/nametab.h
  397. include/eexpat/utf8tab.h
  398. include/eexpat/xmlrole.h
  399. include/eexpat/xmltok.h
  400. include/eexpat/xmltok_impl.h
  401. include/embaln.h
  402. include/embcom.h
  403. include/embcons.h
  404. include/embdata.h
  405. include/embdbi.h
  406. include/embdmx.h
  407. include/embdomain.h
  408. include/embest.h
  409. include/embexit.h
  410. include/embgroup.h
  411. include/embiep.h
  412. include/embindex.h
  413. include/embinit.h
  414. include/embmat.h
  415. include/embmisc.h
  416. include/embmol.h
  417. include/embnmer.h
  418. include/emboss.h
  419. include/embpat.h
  420. include/embpatlist.h
  421. include/embpdb.h
  422. include/embprop.h
  423. include/embread.h
  424. include/embshow.h
  425. include/embsig.h
  426. include/embword.h
  427. include/ensalign.h
  428. include/ensanalysis.h
  429. include/ensassemblyexception.h
  430. include/ensassembly.h
  431. include/ensassemblymapper.h
  432. include/ensattribute.h
  433. include/ensbaseadaptor.h
  434. include/enscache.h
  435. include/enscoordsystem.h
  436. include/ensdatabaseadaptor.h
  437. include/ensdatabaseconnection.h
  438. include/ensdatabaseentry.h
  439. include/ensdata.h
  440. include/ensdensity.h
  441. include/ensditag.h
  442. include/ensembl.h
  443. include/ensexon.h
  444. include/ensexternaldatabase.h
  445. include/ensfeature.h
  446. include/ensgene.h
  447. include/ensgvallele.h
  448. include/ensgvattribute.h
  449. include/ensgvbaseadaptor.h
  450. include/ensgvdatabaseadaptor.h
  451. include/ensgvdata.h
  452. include/ensgvgenotype.h
  453. include/ensgvindividual.h
  454. include/ensgvpopulation.h
  455. include/ensgvsample.h
  456. include/ensgvsource.h
  457. include/ensgvsynonym.h
  458. include/ensgvvariation.h
  459. include/ensintron.h
  460. include/enskaryotype.h
  461. include/ensmapper.h
  462. include/ensmarker.h
  463. include/ensmetacoordinate.h
  464. include/ensmetainformation.h
  465. include/ensmiscellaneous.h
  466. include/ensontology.h
  467. include/ensoperon.h
  468. include/ensprediction.h
  469. include/ensprojectionsegment.h
  470. include/ensprotein.h
  471. include/ensqcalignment.h
  472. include/ensqcdasfeature.h
  473. include/ensqcdatabase.h
  474. include/ensqc.h
  475. include/ensqcsequence.h
  476. include/ensqcsubmission.h
  477. include/ensqcvariation.h
  478. include/ensregistry.h
  479. include/ensrepeat.h
  480. include/ensseqregion.h
  481. include/enssequence.h
  482. include/enssequenceedit.h
  483. include/enssimple.h
  484. include/ensslice.h
  485. include/enssoftware.h
  486. include/ensstorable.h
  487. include/enstable.h
  488. include/enstranslation.h
  489. include/enstranscript.h
  490. include/ensutility.h
  491. include/ensvariation.h
  492. include/epcre/pcre.h
  493. include/epcre/pcre_config.h
  494. include/epcre/pcre_internal.h
  495. include/epcre/pcre_printint.src
  496. include/epcre/pcreemboss.h
  497. include/epcre/pcreposix.h
  498. include/epcre/ucp.h
  499. include/eplplot/disptab.h
  500. include/eplplot/drivers.h
  501. include/eplplot/metadefs.h
  502. include/eplplot/pdf.h
  503. include/eplplot/plConfig.h
  504. include/eplplot/plDevs.h
  505. include/eplplot/plcore.h
  506. include/eplplot/pldebug.h
  507. include/eplplot/pldll.h
  508. include/eplplot/plevent.h
  509. include/eplplot/plfci-type1.h
  510. include/eplplot/plhershey-unicode.h
  511. include/eplplot/plplot.h
  512. include/eplplot/plplotP.h
  513. include/eplplot/plstrm.h
  514. include/eplplot/plunicode-type1.h
  515. include/eplplot/plxwd.h
  516. include/eplplot/ps.h
  517. include/ezlib/crc32.h
  518. include/ezlib/deflate.h
  519. include/ezlib/gzguts.h
  520. include/ezlib/inffast.h
  521. include/ezlib/inffixed.h
  522. include/ezlib/inflate.h
  523. include/ezlib/inftrees.h
  524. include/ezlib/trees.h
  525. include/ezlib/zconf.h
  526. include/ezlib/zlib.h
  527. include/ezlib/zlibemboss.h
  528. include/ezlib/zutil.h
  529. lib/libacd.a
  530. lib/libacd.so
  531. lib/libacd.so.6
  532. lib/libacd.so.6.0.5
  533. lib/libajax.a
  534. lib/libajax.so
  535. lib/libajax.so.6
  536. lib/libajax.so.6.0.5
  537. lib/libajaxdb.a
  538. lib/libajaxdb.so
  539. lib/libajaxdb.so.6
  540. lib/libajaxdb.so.6.0.5
  541. lib/libajaxg.a
  542. lib/libajaxg.so
  543. lib/libajaxg.so.6
  544. lib/libajaxg.so.6.0.5
  545. lib/libeexpat.a
  546. lib/libeexpat.so
  547. lib/libeexpat.so.1
  548. lib/libeexpat.so.1.1.0
  549. lib/libensembl.a
  550. lib/libensembl.so
  551. lib/libensembl.so.6
  552. lib/libensembl.so.6.0.5
  553. lib/libepcre.a
  554. lib/libepcre.so
  555. lib/libepcre.so.7
  556. lib/libepcre.so.7.0.9
  557. lib/libeplplot.a
  558. lib/libeplplot.so
  559. lib/libeplplot.so.3
  560. lib/libeplplot.so.3.2.7
  561. lib/libezlib.a
  562. lib/libezlib.so
  563. lib/libezlib.so.1
  564. lib/libezlib.so.1.1.0
  565. lib/libnucleus.a
  566. lib/libnucleus.so
  567. lib/libnucleus.so.6
  568. lib/libnucleus.so.6.0.5
  569. share/EMBOSS/acd/aaindexextract.acd
  570. share/EMBOSS/acd/abiview.acd
  571. share/EMBOSS/acd/acdc.acd
  572. share/EMBOSS/acd/acdpretty.acd
  573. share/EMBOSS/acd/acdtable.acd
  574. share/EMBOSS/acd/acdtrace.acd
  575. share/EMBOSS/acd/acdvalid.acd
  576. share/EMBOSS/acd/aligncopy.acd
  577. share/EMBOSS/acd/aligncopypair.acd
  578. share/EMBOSS/acd/antigenic.acd
  579. share/EMBOSS/acd/assemblyget.acd
  580. share/EMBOSS/acd/backtranambig.acd
  581. share/EMBOSS/acd/backtranseq.acd
  582. share/EMBOSS/acd/banana.acd
  583. share/EMBOSS/acd/biosed.acd
  584. share/EMBOSS/acd/btwisted.acd
  585. share/EMBOSS/acd/cachedas.acd
  586. share/EMBOSS/acd/cachedbfetch.acd
  587. share/EMBOSS/acd/cacheebeyesearch.acd
  588. share/EMBOSS/acd/cacheensembl.acd
  589. share/EMBOSS/acd/cai.acd
  590. share/EMBOSS/acd/chaos.acd
  591. share/EMBOSS/acd/charge.acd
  592. share/EMBOSS/acd/checktrans.acd
  593. share/EMBOSS/acd/chips.acd
  594. share/EMBOSS/acd/cirdna.acd
  595. share/EMBOSS/acd/codcmp.acd
  596. share/EMBOSS/acd/codcopy.acd
  597. share/EMBOSS/acd/coderet.acd
  598. share/EMBOSS/acd/codes.english
  599. share/EMBOSS/acd/compseq.acd
  600. share/EMBOSS/acd/cons.acd
  601. share/EMBOSS/acd/consambig.acd
  602. share/EMBOSS/acd/cpgplot.acd
  603. share/EMBOSS/acd/cpgreport.acd
  604. share/EMBOSS/acd/cusp.acd
  605. share/EMBOSS/acd/cutgextract.acd
  606. share/EMBOSS/acd/cutseq.acd
  607. share/EMBOSS/acd/dan.acd
  608. share/EMBOSS/acd/dbiblast.acd
  609. share/EMBOSS/acd/dbifasta.acd
  610. share/EMBOSS/acd/dbiflat.acd
  611. share/EMBOSS/acd/dbigcg.acd
  612. share/EMBOSS/acd/dbtell.acd
  613. share/EMBOSS/acd/dbxcompress.acd
  614. share/EMBOSS/acd/dbxedam.acd
  615. share/EMBOSS/acd/dbxfasta.acd
  616. share/EMBOSS/acd/dbxflat.acd
  617. share/EMBOSS/acd/dbxgcg.acd
  618. share/EMBOSS/acd/dbxobo.acd
  619. share/EMBOSS/acd/dbxreport.acd
  620. share/EMBOSS/acd/dbxresource.acd
  621. share/EMBOSS/acd/dbxstat.acd
  622. share/EMBOSS/acd/dbxtax.acd
  623. share/EMBOSS/acd/dbxuncompress.acd
  624. share/EMBOSS/acd/degapseq.acd
  625. share/EMBOSS/acd/density.acd
  626. share/EMBOSS/acd/descseq.acd
  627. share/EMBOSS/acd/diffseq.acd
  628. share/EMBOSS/acd/digest.acd
  629. share/EMBOSS/acd/distmat.acd
  630. share/EMBOSS/acd/dotmatcher.acd
  631. share/EMBOSS/acd/dotpath.acd
  632. share/EMBOSS/acd/dottup.acd
  633. share/EMBOSS/acd/dreg.acd
  634. share/EMBOSS/acd/drfinddata.acd
  635. share/EMBOSS/acd/drfindformat.acd
  636. share/EMBOSS/acd/drfindid.acd
  637. share/EMBOSS/acd/drfindresource.acd
  638. share/EMBOSS/acd/drget.acd
  639. share/EMBOSS/acd/drtext.acd
  640. share/EMBOSS/acd/edamdef.acd
  641. share/EMBOSS/acd/edamhasinput.acd
  642. share/EMBOSS/acd/edamhasoutput.acd
  643. share/EMBOSS/acd/edamisformat.acd
  644. share/EMBOSS/acd/edamisid.acd
  645. share/EMBOSS/acd/edamname.acd
  646. share/EMBOSS/acd/edialign.acd
  647. share/EMBOSS/acd/einverted.acd
  648. share/EMBOSS/acd/embossdata.acd
  649. share/EMBOSS/acd/embossversion.acd
  650. share/EMBOSS/acd/embossupdate.acd
  651. share/EMBOSS/acd/emma.acd
  652. share/EMBOSS/acd/emowse.acd
  653. share/EMBOSS/acd/entret.acd
  654. share/EMBOSS/acd/epestfind.acd
  655. share/EMBOSS/acd/eprimer3.acd
  656. share/EMBOSS/acd/eprimer32.acd
  657. share/EMBOSS/acd/equicktandem.acd
  658. share/EMBOSS/acd/est2genome.acd
  659. share/EMBOSS/acd/etandem.acd
  660. share/EMBOSS/acd/extractalign.acd
  661. share/EMBOSS/acd/extractfeat.acd
  662. share/EMBOSS/acd/extractseq.acd
  663. share/EMBOSS/acd/featcopy.acd
  664. share/EMBOSS/acd/featmerge.acd
  665. share/EMBOSS/acd/featreport.acd
  666. share/EMBOSS/acd/feattext.acd
  667. share/EMBOSS/acd/findkm.acd
  668. share/EMBOSS/acd/freak.acd
  669. share/EMBOSS/acd/fuzznuc.acd
  670. share/EMBOSS/acd/fuzzpro.acd
  671. share/EMBOSS/acd/fuzztran.acd
  672. share/EMBOSS/acd/garnier.acd
  673. share/EMBOSS/acd/geecee.acd
  674. share/EMBOSS/acd/getorf.acd
  675. share/EMBOSS/acd/godef.acd
  676. share/EMBOSS/acd/goname.acd
  677. share/EMBOSS/acd/groups.standard
  678. share/EMBOSS/acd/helixturnhelix.acd
  679. share/EMBOSS/acd/hmoment.acd
  680. share/EMBOSS/acd/iep.acd
  681. share/EMBOSS/acd/infoalign.acd
  682. share/EMBOSS/acd/infoassembly.acd
  683. share/EMBOSS/acd/infobase.acd
  684. share/EMBOSS/acd/inforesidue.acd
  685. share/EMBOSS/acd/infoseq.acd
  686. share/EMBOSS/acd/isochore.acd
  687. share/EMBOSS/acd/jaspextract.acd
  688. share/EMBOSS/acd/jaspscan.acd
  689. share/EMBOSS/acd/keywords.standard
  690. share/EMBOSS/acd/knowntypes.standard
  691. share/EMBOSS/acd/lindna.acd
  692. share/EMBOSS/acd/listor.acd
  693. share/EMBOSS/acd/makenucseq.acd
  694. share/EMBOSS/acd/makeprotseq.acd
  695. share/EMBOSS/acd/marscan.acd
  696. share/EMBOSS/acd/maskambignuc.acd
  697. share/EMBOSS/acd/maskambigprot.acd
  698. share/EMBOSS/acd/maskfeat.acd
  699. share/EMBOSS/acd/maskseq.acd
  700. share/EMBOSS/acd/matcher.acd
  701. share/EMBOSS/acd/megamerger.acd
  702. share/EMBOSS/acd/merger.acd
  703. share/EMBOSS/acd/msbar.acd
  704. share/EMBOSS/acd/mwcontam.acd
  705. share/EMBOSS/acd/mwfilter.acd
  706. share/EMBOSS/acd/needle.acd
  707. share/EMBOSS/acd/needleall.acd
  708. share/EMBOSS/acd/newcpgreport.acd
  709. share/EMBOSS/acd/newcpgseek.acd
  710. share/EMBOSS/acd/newseq.acd
  711. share/EMBOSS/acd/nohtml.acd
  712. share/EMBOSS/acd/noreturn.acd
  713. share/EMBOSS/acd/nospace.acd
  714. share/EMBOSS/acd/notab.acd
  715. share/EMBOSS/acd/notseq.acd
  716. share/EMBOSS/acd/nthseq.acd
  717. share/EMBOSS/acd/nthseqset.acd
  718. share/EMBOSS/acd/octanol.acd
  719. share/EMBOSS/acd/oddcomp.acd
  720. share/EMBOSS/acd/ontocount.acd
  721. share/EMBOSS/acd/ontoget.acd
  722. share/EMBOSS/acd/ontogetcommon.acd
  723. share/EMBOSS/acd/ontogetdown.acd
  724. share/EMBOSS/acd/ontogetobsolete.acd
  725. share/EMBOSS/acd/ontogetroot.acd
  726. share/EMBOSS/acd/ontogetsibs.acd
  727. share/EMBOSS/acd/ontogetup.acd
  728. share/EMBOSS/acd/ontoisobsolete.acd
  729. share/EMBOSS/acd/ontotext.acd
  730. share/EMBOSS/acd/palindrome.acd
  731. share/EMBOSS/acd/pasteseq.acd
  732. share/EMBOSS/acd/patmatdb.acd
  733. share/EMBOSS/acd/patmatmotifs.acd
  734. share/EMBOSS/acd/pepcoil.acd
  735. share/EMBOSS/acd/pepdigest.acd
  736. share/EMBOSS/acd/pepinfo.acd
  737. share/EMBOSS/acd/pepnet.acd
  738. share/EMBOSS/acd/pepstats.acd
  739. share/EMBOSS/acd/pepwheel.acd
  740. share/EMBOSS/acd/pepwindow.acd
  741. share/EMBOSS/acd/pepwindowall.acd
  742. share/EMBOSS/acd/plotcon.acd
  743. share/EMBOSS/acd/plotorf.acd
  744. share/EMBOSS/acd/polydot.acd
  745. share/EMBOSS/acd/preg.acd
  746. share/EMBOSS/acd/prettyplot.acd
  747. share/EMBOSS/acd/prettyseq.acd
  748. share/EMBOSS/acd/primersearch.acd
  749. share/EMBOSS/acd/printsextract.acd
  750. share/EMBOSS/acd/profit.acd
  751. share/EMBOSS/acd/prophecy.acd
  752. share/EMBOSS/acd/prophet.acd
  753. share/EMBOSS/acd/prosextract.acd
  754. share/EMBOSS/acd/pscan.acd
  755. share/EMBOSS/acd/psiphi.acd
  756. share/EMBOSS/acd/rebaseextract.acd
  757. share/EMBOSS/acd/recoder.acd
  758. share/EMBOSS/acd/redata.acd
  759. share/EMBOSS/acd/refseqget.acd
  760. share/EMBOSS/acd/remap.acd
  761. share/EMBOSS/acd/restover.acd
  762. share/EMBOSS/acd/restrict.acd
  763. share/EMBOSS/acd/revseq.acd
  764. share/EMBOSS/acd/sections.standard
  765. share/EMBOSS/acd/seealso.acd
  766. share/EMBOSS/acd/seqcount.acd
  767. share/EMBOSS/acd/seqmatchall.acd
  768. share/EMBOSS/acd/seqret.acd
  769. share/EMBOSS/acd/seqretsetall.acd
  770. share/EMBOSS/acd/seqretsplit.acd
  771. share/EMBOSS/acd/seqxref.acd
  772. share/EMBOSS/acd/seqxrefget.acd
  773. share/EMBOSS/acd/servertell.acd
  774. share/EMBOSS/acd/showalign.acd
  775. share/EMBOSS/acd/showdb.acd
  776. share/EMBOSS/acd/showfeat.acd
  777. share/EMBOSS/acd/showorf.acd
  778. share/EMBOSS/acd/showpep.acd
  779. share/EMBOSS/acd/showseq.acd
  780. share/EMBOSS/acd/showserver.acd
  781. share/EMBOSS/acd/shuffleseq.acd
  782. share/EMBOSS/acd/sigcleave.acd
  783. share/EMBOSS/acd/silent.acd
  784. share/EMBOSS/acd/sirna.acd
  785. share/EMBOSS/acd/sixpack.acd
  786. share/EMBOSS/acd/sizeseq.acd
  787. share/EMBOSS/acd/skipredundant.acd
  788. share/EMBOSS/acd/skipseq.acd
  789. share/EMBOSS/acd/splitsource.acd
  790. share/EMBOSS/acd/splitter.acd
  791. share/EMBOSS/acd/stretcher.acd
  792. share/EMBOSS/acd/stssearch.acd
  793. share/EMBOSS/acd/supermatcher.acd
  794. share/EMBOSS/acd/syco.acd
  795. share/EMBOSS/acd/taxget.acd
  796. share/EMBOSS/acd/taxgetdown.acd
  797. share/EMBOSS/acd/taxgetrank.acd
  798. share/EMBOSS/acd/taxgetspecies.acd
  799. share/EMBOSS/acd/taxgetup.acd
  800. share/EMBOSS/acd/tcode.acd
  801. share/EMBOSS/acd/textget.acd
  802. share/EMBOSS/acd/textsearch.acd
  803. share/EMBOSS/acd/tfextract.acd
  804. share/EMBOSS/acd/tfm.acd
  805. share/EMBOSS/acd/tfscan.acd
  806. share/EMBOSS/acd/tmap.acd
  807. share/EMBOSS/acd/tranalign.acd
  808. share/EMBOSS/acd/transeq.acd
  809. share/EMBOSS/acd/trimest.acd
  810. share/EMBOSS/acd/trimseq.acd
  811. share/EMBOSS/acd/trimspace.acd
  812. share/EMBOSS/acd/twofeat.acd
  813. share/EMBOSS/acd/union.acd
  814. share/EMBOSS/acd/urlget.acd
  815. share/EMBOSS/acd/variables.standard
  816. share/EMBOSS/acd/variationget.acd
  817. share/EMBOSS/acd/vectorstrip.acd
  818. share/EMBOSS/acd/water.acd
  819. share/EMBOSS/acd/whichdb.acd
  820. share/EMBOSS/acd/wobble.acd
  821. share/EMBOSS/acd/wordcount.acd
  822. share/EMBOSS/acd/wordfinder.acd
  823. share/EMBOSS/acd/wordmatch.acd
  824. share/EMBOSS/acd/wossdata.acd
  825. share/EMBOSS/acd/wossinput.acd
  826. share/EMBOSS/acd/wossname.acd
  827. share/EMBOSS/acd/wossoperation.acd
  828. share/EMBOSS/acd/wossoutput.acd
  829. share/EMBOSS/acd/wossparam.acd
  830. share/EMBOSS/acd/wosstopic.acd
  831. share/EMBOSS/acd/xmlget.acd
  832. share/EMBOSS/acd/xmltext.acd
  833. share/EMBOSS/acd/yank.acd
  834. share/EMBOSS/data/AAINDEX/dummyfile
  835. share/EMBOSS/data/CODONS/Cut.index
  836. share/EMBOSS/data/CODONS/Eacc.cut
  837. share/EMBOSS/data/CODONS/Eacica.cut
  838. share/EMBOSS/data/CODONS/Eadenovirus5.cut
  839. share/EMBOSS/data/CODONS/Eadenovirus7.cut
  840. share/EMBOSS/data/CODONS/Eagrtu.cut
  841. share/EMBOSS/data/CODONS/Eaidlav.cut
  842. share/EMBOSS/data/CODONS/Eanasp.cut
  843. share/EMBOSS/data/CODONS/Eani.cut
  844. share/EMBOSS/data/CODONS/Eani_h.cut
  845. share/EMBOSS/data/CODONS/Eanidmit.cut
  846. share/EMBOSS/data/CODONS/Earath.cut
  847. share/EMBOSS/data/CODONS/Easn.cut
  848. share/EMBOSS/data/CODONS/Eath.cut
  849. share/EMBOSS/data/CODONS/Eatu.cut
  850. share/EMBOSS/data/CODONS/Eavi.cut
  851. share/EMBOSS/data/CODONS/Eazovi.cut
  852. share/EMBOSS/data/CODONS/Ebacme.cut
  853. share/EMBOSS/data/CODONS/Ebacst.cut
  854. share/EMBOSS/data/CODONS/Ebacsu.cut
  855. share/EMBOSS/data/CODONS/Ebacsu_high.cut
  856. share/EMBOSS/data/CODONS/Ebja.cut
  857. share/EMBOSS/data/CODONS/Ebly.cut
  858. share/EMBOSS/data/CODONS/Ebme.cut
  859. share/EMBOSS/data/CODONS/Ebmo.cut
  860. share/EMBOSS/data/CODONS/Ebna.cut
  861. share/EMBOSS/data/CODONS/Ebommo.cut
  862. share/EMBOSS/data/CODONS/Ebov.cut
  863. share/EMBOSS/data/CODONS/Ebovin.cut
  864. share/EMBOSS/data/CODONS/Ebovsp.cut
  865. share/EMBOSS/data/CODONS/Ebpphx.cut
  866. share/EMBOSS/data/CODONS/Ebraja.cut
  867. share/EMBOSS/data/CODONS/Ebrana.cut
  868. share/EMBOSS/data/CODONS/Ebrare.cut
  869. share/EMBOSS/data/CODONS/Ebst.cut
  870. share/EMBOSS/data/CODONS/Ebsu.cut
  871. share/EMBOSS/data/CODONS/Ebsu_h.cut
  872. share/EMBOSS/data/CODONS/Ecac.cut
  873. share/EMBOSS/data/CODONS/Ecaeel.cut
  874. share/EMBOSS/data/CODONS/Ecal.cut
  875. share/EMBOSS/data/CODONS/Ecanal.cut
  876. share/EMBOSS/data/CODONS/Ecanfa.cut
  877. share/EMBOSS/data/CODONS/Ecaucr.cut
  878. share/EMBOSS/data/CODONS/Eccr.cut
  879. share/EMBOSS/data/CODONS/Ecel.cut
  880. share/EMBOSS/data/CODONS/Echi.cut
  881. share/EMBOSS/data/CODONS/Echick.cut
  882. share/EMBOSS/data/CODONS/Echicken.cut
  883. share/EMBOSS/data/CODONS/Echisp.cut
  884. share/EMBOSS/data/CODONS/Echk.cut
  885. share/EMBOSS/data/CODONS/Echlre.cut
  886. share/EMBOSS/data/CODONS/Echltr.cut
  887. share/EMBOSS/data/CODONS/Echmp.cut
  888. share/EMBOSS/data/CODONS/Echnt.cut
  889. share/EMBOSS/data/CODONS/Echos.cut
  890. share/EMBOSS/data/CODONS/Echzm.cut
  891. share/EMBOSS/data/CODONS/Echzmrubp.cut
  892. share/EMBOSS/data/CODONS/Ecloab.cut
  893. share/EMBOSS/data/CODONS/Ecpx.cut
  894. share/EMBOSS/data/CODONS/Ecre.cut
  895. share/EMBOSS/data/CODONS/Ecrigr.cut
  896. share/EMBOSS/data/CODONS/Ecrisp.cut
  897. share/EMBOSS/data/CODONS/Ectr.cut
  898. share/EMBOSS/data/CODONS/Ecyapa.cut
  899. share/EMBOSS/data/CODONS/Edayhoff.cut
  900. share/EMBOSS/data/CODONS/Eddi.cut
  901. share/EMBOSS/data/CODONS/Eddi_h.cut
  902. share/EMBOSS/data/CODONS/Edicdi.cut
  903. share/EMBOSS/data/CODONS/Edicdi_high.cut
  904. share/EMBOSS/data/CODONS/Edog.cut
  905. share/EMBOSS/data/CODONS/Edro.cut
  906. share/EMBOSS/data/CODONS/Edro_h.cut
  907. share/EMBOSS/data/CODONS/Edrome.cut
  908. share/EMBOSS/data/CODONS/Edrome_high.cut
  909. share/EMBOSS/data/CODONS/Edrosophila.cut
  910. share/EMBOSS/data/CODONS/Eeca.cut
  911. share/EMBOSS/data/CODONS/Eeco.cut
  912. share/EMBOSS/data/CODONS/Eeco_h.cut
  913. share/EMBOSS/data/CODONS/Eecoli.cut
  914. share/EMBOSS/data/CODONS/Eecoli_high.cut
  915. share/EMBOSS/data/CODONS/Eemeni.cut
  916. share/EMBOSS/data/CODONS/Eemeni_high.cut
  917. share/EMBOSS/data/CODONS/Eemeni_mit.cut
  918. share/EMBOSS/data/CODONS/Eerwct.cut
  919. share/EMBOSS/data/CODONS/Ef1.cut
  920. share/EMBOSS/data/CODONS/Efish.cut
  921. share/EMBOSS/data/CODONS/Efmdvpolyp.cut
  922. share/EMBOSS/data/CODONS/Ehaein.cut
  923. share/EMBOSS/data/CODONS/Ehalma.cut
  924. share/EMBOSS/data/CODONS/Ehalsa.cut
  925. share/EMBOSS/data/CODONS/Eham.cut
  926. share/EMBOSS/data/CODONS/Ehha.cut
  927. share/EMBOSS/data/CODONS/Ehin.cut
  928. share/EMBOSS/data/CODONS/Ehma.cut
  929. share/EMBOSS/data/CODONS/Ehorvu.cut
  930. share/EMBOSS/data/CODONS/Ehum.cut
  931. share/EMBOSS/data/CODONS/Ehuman.cut
  932. share/EMBOSS/data/CODONS/Ekla.cut
  933. share/EMBOSS/data/CODONS/Eklepn.cut
  934. share/EMBOSS/data/CODONS/Eklula.cut
  935. share/EMBOSS/data/CODONS/Ekpn.cut
  936. share/EMBOSS/data/CODONS/Elacdl.cut
  937. share/EMBOSS/data/CODONS/Ella.cut
  938. share/EMBOSS/data/CODONS/Elyces.cut
  939. share/EMBOSS/data/CODONS/Emac.cut
  940. share/EMBOSS/data/CODONS/Emacfa.cut
  941. share/EMBOSS/data/CODONS/Emaize.cut
  942. share/EMBOSS/data/CODONS/Emaize_chl.cut
  943. share/EMBOSS/data/CODONS/Emam_h.cut
  944. share/EMBOSS/data/CODONS/Emammal_high.cut
  945. share/EMBOSS/data/CODONS/Emanse.cut
  946. share/EMBOSS/data/CODONS/Emarpo_chl.cut
  947. share/EMBOSS/data/CODONS/Emedsa.cut
  948. share/EMBOSS/data/CODONS/Emetth.cut
  949. share/EMBOSS/data/CODONS/Emixlg.cut
  950. share/EMBOSS/data/CODONS/Emouse.cut
  951. share/EMBOSS/data/CODONS/Emsa.cut
  952. share/EMBOSS/data/CODONS/Emse.cut
  953. share/EMBOSS/data/CODONS/Emta.cut
  954. share/EMBOSS/data/CODONS/Emtu.cut
  955. share/EMBOSS/data/CODONS/Emus.cut
  956. share/EMBOSS/data/CODONS/Emussp.cut
  957. share/EMBOSS/data/CODONS/Emva.cut
  958. share/EMBOSS/data/CODONS/Emyctu.cut
  959. share/EMBOSS/data/CODONS/Emze.cut
  960. share/EMBOSS/data/CODONS/Emzecp.cut
  961. share/EMBOSS/data/CODONS/Encr.cut
  962. share/EMBOSS/data/CODONS/Eneigo.cut
  963. share/EMBOSS/data/CODONS/Eneu.cut
  964. share/EMBOSS/data/CODONS/Eneucr.cut
  965. share/EMBOSS/data/CODONS/Engo.cut
  966. share/EMBOSS/data/CODONS/Eoncmy.cut
  967. share/EMBOSS/data/CODONS/Eoncsp.cut
  968. share/EMBOSS/data/CODONS/Eorysa.cut
  969. share/EMBOSS/data/CODONS/Eorysa_chl.cut
  970. share/EMBOSS/data/CODONS/Epae.cut
  971. share/EMBOSS/data/CODONS/Epea.cut
  972. share/EMBOSS/data/CODONS/Epet.cut
  973. share/EMBOSS/data/CODONS/Epethy.cut
  974. share/EMBOSS/data/CODONS/Epfa.cut
  975. share/EMBOSS/data/CODONS/Ephavu.cut
  976. share/EMBOSS/data/CODONS/Ephix174.cut
  977. share/EMBOSS/data/CODONS/Ephv.cut
  978. share/EMBOSS/data/CODONS/Ephy.cut
  979. share/EMBOSS/data/CODONS/Epig.cut
  980. share/EMBOSS/data/CODONS/Eplafa.cut
  981. share/EMBOSS/data/CODONS/Epolyomaa2.cut
  982. share/EMBOSS/data/CODONS/Epombe.cut
  983. share/EMBOSS/data/CODONS/Epombecai.cut
  984. share/EMBOSS/data/CODONS/Epot.cut
  985. share/EMBOSS/data/CODONS/Eppu.cut
  986. share/EMBOSS/data/CODONS/Eprovu.cut
  987. share/EMBOSS/data/CODONS/Epse.cut
  988. share/EMBOSS/data/CODONS/Epseae.cut
  989. share/EMBOSS/data/CODONS/Epsepu.cut
  990. share/EMBOSS/data/CODONS/Epsesm.cut
  991. share/EMBOSS/data/CODONS/Epsy.cut
  992. share/EMBOSS/data/CODONS/Epvu.cut
  993. share/EMBOSS/data/CODONS/Erab.cut
  994. share/EMBOSS/data/CODONS/Erabbit.cut
  995. share/EMBOSS/data/CODONS/Erabit.cut
  996. share/EMBOSS/data/CODONS/Erabsp.cut
  997. share/EMBOSS/data/CODONS/Erat.cut
  998. share/EMBOSS/data/CODONS/Eratsp.cut
  999. share/EMBOSS/data/CODONS/Erca.cut
  1000. share/EMBOSS/data/CODONS/Erhile.cut
  1001. share/EMBOSS/data/CODONS/Erhime.cut
  1002. share/EMBOSS/data/CODONS/Erhm.cut
  1003. share/EMBOSS/data/CODONS/Erhoca.cut
  1004. share/EMBOSS/data/CODONS/Erhosh.cut
  1005. share/EMBOSS/data/CODONS/Eric.cut
  1006. share/EMBOSS/data/CODONS/Erle.cut
  1007. share/EMBOSS/data/CODONS/Erme.cut
  1008. share/EMBOSS/data/CODONS/Ersp.cut
  1009. share/EMBOSS/data/CODONS/Esalsa.cut
  1010. share/EMBOSS/data/CODONS/Esalsp.cut
  1011. share/EMBOSS/data/CODONS/Esalty.cut
  1012. share/EMBOSS/data/CODONS/Esau.cut
  1013. share/EMBOSS/data/CODONS/Eschma.cut
  1014. share/EMBOSS/data/CODONS/Eschpo.cut
  1015. share/EMBOSS/data/CODONS/Eschpo_cai.cut
  1016. share/EMBOSS/data/CODONS/Eschpo_high.cut
  1017. share/EMBOSS/data/CODONS/Esco.cut
  1018. share/EMBOSS/data/CODONS/Eserma.cut
  1019. share/EMBOSS/data/CODONS/Esgi.cut
  1020. share/EMBOSS/data/CODONS/Esheep.cut
  1021. share/EMBOSS/data/CODONS/Eshp.cut
  1022. share/EMBOSS/data/CODONS/Eshpsp.cut
  1023. share/EMBOSS/data/CODONS/Esli.cut
  1024. share/EMBOSS/data/CODONS/Eslm.cut
  1025. share/EMBOSS/data/CODONS/Esma.cut
  1026. share/EMBOSS/data/CODONS/Esmi.cut
  1027. share/EMBOSS/data/CODONS/Esmu.cut
  1028. share/EMBOSS/data/CODONS/Esoltu.cut
  1029. share/EMBOSS/data/CODONS/Esoy.cut
  1030. share/EMBOSS/data/CODONS/Esoybn.cut
  1031. share/EMBOSS/data/CODONS/Espi.cut
  1032. share/EMBOSS/data/CODONS/Espiol.cut
  1033. share/EMBOSS/data/CODONS/Espn.cut
  1034. share/EMBOSS/data/CODONS/Espo.cut
  1035. share/EMBOSS/data/CODONS/Espo_h.cut
  1036. share/EMBOSS/data/CODONS/Espu.cut
  1037. share/EMBOSS/data/CODONS/Esta.cut
  1038. share/EMBOSS/data/CODONS/Estaau.cut
  1039. share/EMBOSS/data/CODONS/Estrco.cut
  1040. share/EMBOSS/data/CODONS/Estrmu.cut
  1041. share/EMBOSS/data/CODONS/Estrpn.cut
  1042. share/EMBOSS/data/CODONS/Estrpu.cut
  1043. share/EMBOSS/data/CODONS/Esty.cut
  1044. share/EMBOSS/data/CODONS/Esus.cut
  1045. share/EMBOSS/data/CODONS/Esv40.cut
  1046. share/EMBOSS/data/CODONS/Esyhsp.cut
  1047. share/EMBOSS/data/CODONS/Esynco.cut
  1048. share/EMBOSS/data/CODONS/Esyncy.cut
  1049. share/EMBOSS/data/CODONS/Esynsp.cut
  1050. share/EMBOSS/data/CODONS/Etbr.cut
  1051. share/EMBOSS/data/CODONS/Etcr.cut
  1052. share/EMBOSS/data/CODONS/Eter.cut
  1053. share/EMBOSS/data/CODONS/Etetsp.cut
  1054. share/EMBOSS/data/CODONS/Etetth.cut
  1055. share/EMBOSS/data/CODONS/Etheth.cut
  1056. share/EMBOSS/data/CODONS/Etob.cut
  1057. share/EMBOSS/data/CODONS/Etobac.cut
  1058. share/EMBOSS/data/CODONS/Etobac_chl.cut
  1059. share/EMBOSS/data/CODONS/Etobcp.cut
  1060. share/EMBOSS/data/CODONS/Etom.cut
  1061. share/EMBOSS/data/CODONS/Etrb.cut
  1062. share/EMBOSS/data/CODONS/Etrybr.cut
  1063. share/EMBOSS/data/CODONS/Etrycr.cut
  1064. share/EMBOSS/data/CODONS/Evco.cut
  1065. share/EMBOSS/data/CODONS/Evibch.cut
  1066. share/EMBOSS/data/CODONS/Ewheat.cut
  1067. share/EMBOSS/data/CODONS/Ewht.cut
  1068. share/EMBOSS/data/CODONS/Exel.cut
  1069. share/EMBOSS/data/CODONS/Exenla.cut
  1070. share/EMBOSS/data/CODONS/Exenopus.cut
  1071. share/EMBOSS/data/CODONS/Eyeast.cut
  1072. share/EMBOSS/data/CODONS/Eyeast_cai.cut
  1073. share/EMBOSS/data/CODONS/Eyeast_high.cut
  1074. share/EMBOSS/data/CODONS/Eyeast_mit.cut
  1075. share/EMBOSS/data/CODONS/Eyeastcai.cut
  1076. share/EMBOSS/data/CODONS/Eyen.cut
  1077. share/EMBOSS/data/CODONS/Eyeren.cut
  1078. share/EMBOSS/data/CODONS/Eyerpe.cut
  1079. share/EMBOSS/data/CODONS/Eysc.cut
  1080. share/EMBOSS/data/CODONS/Eysc_h.cut
  1081. share/EMBOSS/data/CODONS/Eyscmt.cut
  1082. share/EMBOSS/data/CODONS/Eysp.cut
  1083. share/EMBOSS/data/CODONS/Ezebrafish.cut
  1084. share/EMBOSS/data/CODONS/Ezma.cut
  1085. share/EMBOSS/data/DRCAT.dat
  1086. share/EMBOSS/data/EBLOSUM30
  1087. share/EMBOSS/data/EBLOSUM35
  1088. share/EMBOSS/data/EBLOSUM40
  1089. share/EMBOSS/data/EBLOSUM45
  1090. share/EMBOSS/data/EBLOSUM50
  1091. share/EMBOSS/data/EBLOSUM55
  1092. share/EMBOSS/data/EBLOSUM60
  1093. share/EMBOSS/data/EBLOSUM62
  1094. share/EMBOSS/data/EBLOSUM62-12
  1095. share/EMBOSS/data/EBLOSUM65
  1096. share/EMBOSS/data/EBLOSUM70
  1097. share/EMBOSS/data/EBLOSUM75
  1098. share/EMBOSS/data/EBLOSUM80
  1099. share/EMBOSS/data/EBLOSUM85
  1100. share/EMBOSS/data/EBLOSUM90
  1101. share/EMBOSS/data/EBLOSUMN
  1102. share/EMBOSS/data/EDAM.obo
  1103. share/EMBOSS/data/EDNAFULL
  1104. share/EMBOSS/data/EDNAMAT
  1105. share/EMBOSS/data/EDNASIMPLE
  1106. share/EMBOSS/data/EGC.0
  1107. share/EMBOSS/data/EGC.1
  1108. share/EMBOSS/data/EGC.10
  1109. share/EMBOSS/data/EGC.11
  1110. share/EMBOSS/data/EGC.12
  1111. share/EMBOSS/data/EGC.13
  1112. share/EMBOSS/data/EGC.14
  1113. share/EMBOSS/data/EGC.15
  1114. share/EMBOSS/data/EGC.16
  1115. share/EMBOSS/data/EGC.2
  1116. share/EMBOSS/data/EGC.21
  1117. share/EMBOSS/data/EGC.22
  1118. share/EMBOSS/data/EGC.23
  1119. share/EMBOSS/data/EGC.3
  1120. share/EMBOSS/data/EGC.4
  1121. share/EMBOSS/data/EGC.5
  1122. share/EMBOSS/data/EGC.6
  1123. share/EMBOSS/data/EGC.9
  1124. share/EMBOSS/data/EGC.index
  1125. share/EMBOSS/data/EGC.txt
  1126. share/EMBOSS/data/ENUC.4.2
  1127. share/EMBOSS/data/ENUC.4.4
  1128. share/EMBOSS/data/EPAM10
  1129. share/EMBOSS/data/EPAM100
  1130. share/EMBOSS/data/EPAM110
  1131. share/EMBOSS/data/EPAM120
  1132. share/EMBOSS/data/EPAM130
  1133. share/EMBOSS/data/EPAM140
  1134. share/EMBOSS/data/EPAM150
  1135. share/EMBOSS/data/EPAM160
  1136. share/EMBOSS/data/EPAM170
  1137. share/EMBOSS/data/EPAM180
  1138. share/EMBOSS/data/EPAM190
  1139. share/EMBOSS/data/EPAM20
  1140. share/EMBOSS/data/EPAM200
  1141. share/EMBOSS/data/EPAM210
  1142. share/EMBOSS/data/EPAM220
  1143. share/EMBOSS/data/EPAM230
  1144. share/EMBOSS/data/EPAM240
  1145. share/EMBOSS/data/EPAM250
  1146. share/EMBOSS/data/EPAM260
  1147. share/EMBOSS/data/EPAM270
  1148. share/EMBOSS/data/EPAM280
  1149. share/EMBOSS/data/EPAM290
  1150. share/EMBOSS/data/EPAM30
  1151. share/EMBOSS/data/EPAM300
  1152. share/EMBOSS/data/EPAM310
  1153. share/EMBOSS/data/EPAM320
  1154. share/EMBOSS/data/EPAM330
  1155. share/EMBOSS/data/EPAM340
  1156. share/EMBOSS/data/EPAM350
  1157. share/EMBOSS/data/EPAM360
  1158. share/EMBOSS/data/EPAM370
  1159. share/EMBOSS/data/EPAM380
  1160. share/EMBOSS/data/EPAM390
  1161. share/EMBOSS/data/EPAM40
  1162. share/EMBOSS/data/EPAM400
  1163. share/EMBOSS/data/EPAM410
  1164. share/EMBOSS/data/EPAM420
  1165. share/EMBOSS/data/EPAM430
  1166. share/EMBOSS/data/EPAM440
  1167. share/EMBOSS/data/EPAM450
  1168. share/EMBOSS/data/EPAM460
  1169. share/EMBOSS/data/EPAM470
  1170. share/EMBOSS/data/EPAM480
  1171. share/EMBOSS/data/EPAM490
  1172. share/EMBOSS/data/EPAM50
  1173. share/EMBOSS/data/EPAM500
  1174. share/EMBOSS/data/EPAM60
  1175. share/EMBOSS/data/EPAM70
  1176. share/EMBOSS/data/EPAM80
  1177. share/EMBOSS/data/EPAM90
  1178. share/EMBOSS/data/Eaa_acc_surface.dat
  1179. share/EMBOSS/data/Eaa_hydropathy.dat
  1180. share/EMBOSS/data/Eaa_properties.dat
  1181. share/EMBOSS/data/Eamino.dat
  1182. share/EMBOSS/data/Eangles.dat
  1183. share/EMBOSS/data/Eangles_tri.dat
  1184. share/EMBOSS/data/Eantigenic.dat
  1185. share/EMBOSS/data/Ebases.iub
  1186. share/EMBOSS/data/Edayhoff.freq
  1187. share/EMBOSS/data/Edna.melt
  1188. share/EMBOSS/data/Eembl.ior
  1189. share/EMBOSS/data/Eenergy.dat
  1190. share/EMBOSS/data/Efeatures.embl
  1191. share/EMBOSS/data/Efeatures.emboss
  1192. share/EMBOSS/data/Efeatures.gff2
  1193. share/EMBOSS/data/Efeatures.gff2protein
  1194. share/EMBOSS/data/Efeatures.gff3
  1195. share/EMBOSS/data/Efeatures.gff3protein
  1196. share/EMBOSS/data/Efeatures.pir
  1197. share/EMBOSS/data/Efeatures.refseqp
  1198. share/EMBOSS/data/Efeatures.protein
  1199. share/EMBOSS/data/Efeatures.swiss
  1200. share/EMBOSS/data/Efreqs.dat
  1201. share/EMBOSS/data/Ehet.dat
  1202. share/EMBOSS/data/Ehth.dat
  1203. share/EMBOSS/data/Ehth87.dat
  1204. share/EMBOSS/data/Emass.dat
  1205. share/EMBOSS/data/Emassmod.dat
  1206. share/EMBOSS/data/Ememe.dat
  1207. share/EMBOSS/data/Emethylsites.dat
  1208. share/EMBOSS/data/Emolwt.dat
  1209. share/EMBOSS/data/Emwfilter.dat
  1210. share/EMBOSS/data/Enakai.dat
  1211. share/EMBOSS/data/EnsemblAliases.dat
  1212. share/EMBOSS/data/EnsemblIdentifiers.dat
  1213. share/EMBOSS/data/Epepcoil.dat
  1214. share/EMBOSS/data/Epk.dat
  1215. share/EMBOSS/data/Epkexpasy.dat
  1216. share/EMBOSS/data/Epprofile
  1217. share/EMBOSS/data/Eprior1.plib
  1218. share/EMBOSS/data/Eprior30.plib
  1219. share/EMBOSS/data/Eresidues.iub
  1220. share/EMBOSS/data/Erna.melt
  1221. share/EMBOSS/data/Esig.euk
  1222. share/EMBOSS/data/Esig.pro
  1223. share/EMBOSS/data/Etags.embl
  1224. share/EMBOSS/data/Etags.emboss
  1225. share/EMBOSS/data/Etags.gff2
  1226. share/EMBOSS/data/Etags.gff2protein
  1227. share/EMBOSS/data/Etags.gff3
  1228. share/EMBOSS/data/Etags.gff3protein
  1229. share/EMBOSS/data/Etags.pir
  1230. share/EMBOSS/data/Etags.protein
  1231. share/EMBOSS/data/Etags.refseqp
  1232. share/EMBOSS/data/Etags.swiss
  1233. share/EMBOSS/data/Etcode.dat
  1234. share/EMBOSS/data/Evdw.dat
  1235. share/EMBOSS/data/Ewhite-wimley.dat
  1236. share/EMBOSS/data/JASPAR_CNE/dummyfile
  1237. share/EMBOSS/data/JASPAR_CORE/dummyfile
  1238. share/EMBOSS/data/JASPAR_FAM/dummyfile
  1239. share/EMBOSS/data/JASPAR_PBM/dummyfile
  1240. share/EMBOSS/data/JASPAR_PBM_HLH/dummyfile
  1241. share/EMBOSS/data/JASPAR_PBM_HOMEO/dummyfile
  1242. share/EMBOSS/data/JASPAR_PHYLOFACTS/dummyfile
  1243. share/EMBOSS/data/JASPAR_POLII/dummyfile
  1244. share/EMBOSS/data/JASPAR_SPLICE/dummyfile
  1245. share/EMBOSS/data/Matrices.nucleotide
  1246. share/EMBOSS/data/Matrices.protein
  1247. share/EMBOSS/data/Matrices.proteinstructure
  1248. share/EMBOSS/data/OBO/chebi.obo
  1249. share/EMBOSS/data/OBO/eco.obo
  1250. share/EMBOSS/data/OBO/go.obo
  1251. share/EMBOSS/data/OBO/pathway.obo
  1252. share/EMBOSS/data/OBO/ro.obo
  1253. share/EMBOSS/data/OBO/so.obo
  1254. share/EMBOSS/data/OBO/software.obo
  1255. share/EMBOSS/data/PRINTS/dummyfile
  1256. share/EMBOSS/data/PROSITE/dummyfile
  1257. share/EMBOSS/data/REBASE/embossre.equ
  1258. share/EMBOSS/data/SSSUB
  1259. share/EMBOSS/data/TAXONOMY/division.dmp
  1260. share/EMBOSS/data/TAXONOMY/gencode.dmp
  1261. share/EMBOSS/data/TAXONOMY/merged.dmp
  1262. share/EMBOSS/data/TAXONOMY/names.dmp
  1263. share/EMBOSS/data/TAXONOMY/nodes.dmp
  1264. share/EMBOSS/data/edialignmat
  1265. share/EMBOSS/data/tp400_dna
  1266. share/EMBOSS/data/tp400_prot
  1267. share/EMBOSS/data/tp400_trans
  1268. share/EMBOSS/emboss.default.template
  1269. share/EMBOSS/emboss.standard
  1270. share/EMBOSS/index/chebi.ent
  1271. share/EMBOSS/index/chebi.pxac
  1272. share/EMBOSS/index/chebi.pxde
  1273. share/EMBOSS/index/chebi.pxid
  1274. share/EMBOSS/index/chebi.pxis
  1275. share/EMBOSS/index/chebi.pxnm
  1276. share/EMBOSS/index/chebi.pxns
  1277. share/EMBOSS/index/chebi.xac
  1278. share/EMBOSS/index/chebi.xde
  1279. share/EMBOSS/index/chebi.xid
  1280. share/EMBOSS/index/chebi.xis
  1281. share/EMBOSS/index/chebi.xnm
  1282. share/EMBOSS/index/chebi.xns
  1283. share/EMBOSS/index/drcat.ent
  1284. share/EMBOSS/index/drcat.pxac
  1285. share/EMBOSS/index/drcat.pxcat
  1286. share/EMBOSS/index/drcat.pxde
  1287. share/EMBOSS/index/drcat.pxedat
  1288. share/EMBOSS/index/drcat.pxefmt
  1289. share/EMBOSS/index/drcat.pxeid
  1290. share/EMBOSS/index/drcat.pxetpc
  1291. share/EMBOSS/index/drcat.pxid
  1292. share/EMBOSS/index/drcat.pxqfmt
  1293. share/EMBOSS/index/drcat.pxqin
  1294. share/EMBOSS/index/drcat.pxqout
  1295. share/EMBOSS/index/drcat.pxqurl
  1296. share/EMBOSS/index/drcat.pxrest
  1297. share/EMBOSS/index/drcat.pxrf
  1298. share/EMBOSS/index/drcat.pxsoap
  1299. share/EMBOSS/index/drcat.pxtaxid
  1300. share/EMBOSS/index/drcat.pxurl
  1301. share/EMBOSS/index/drcat.xac
  1302. share/EMBOSS/index/drcat.xcat
  1303. share/EMBOSS/index/drcat.xde
  1304. share/EMBOSS/index/drcat.xedat
  1305. share/EMBOSS/index/drcat.xefmt
  1306. share/EMBOSS/index/drcat.xeid
  1307. share/EMBOSS/index/drcat.xetpc
  1308. share/EMBOSS/index/drcat.xid
  1309. share/EMBOSS/index/drcat.xqfmt
  1310. share/EMBOSS/index/drcat.xqin
  1311. share/EMBOSS/index/drcat.xqout
  1312. share/EMBOSS/index/drcat.xqurl
  1313. share/EMBOSS/index/drcat.xrest
  1314. share/EMBOSS/index/drcat.xrf
  1315. share/EMBOSS/index/drcat.xsoap
  1316. share/EMBOSS/index/drcat.xtaxid
  1317. share/EMBOSS/index/drcat.xurl
  1318. share/EMBOSS/index/eco.ent
  1319. share/EMBOSS/index/eco.pxac
  1320. share/EMBOSS/index/eco.pxde
  1321. share/EMBOSS/index/eco.pxid
  1322. share/EMBOSS/index/eco.pxis
  1323. share/EMBOSS/index/eco.pxnm
  1324. share/EMBOSS/index/eco.xac
  1325. share/EMBOSS/index/eco.xde
  1326. share/EMBOSS/index/eco.xid
  1327. share/EMBOSS/index/eco.xis
  1328. share/EMBOSS/index/eco.xnm
  1329. share/EMBOSS/index/edam.ent
  1330. share/EMBOSS/index/edam.pxac
  1331. share/EMBOSS/index/edam.pxde
  1332. share/EMBOSS/index/edam.pxhasin
  1333. share/EMBOSS/index/edam.pxhasout
  1334. share/EMBOSS/index/edam.pxid
  1335. share/EMBOSS/index/edam.pxis
  1336. share/EMBOSS/index/edam.pxisfmt
  1337. share/EMBOSS/index/edam.pxisid
  1338. share/EMBOSS/index/edam.pxnm
  1339. share/EMBOSS/index/edam.pxns
  1340. share/EMBOSS/index/edam.xac
  1341. share/EMBOSS/index/edam.xde
  1342. share/EMBOSS/index/edam.xhasin
  1343. share/EMBOSS/index/edam.xhasout
  1344. share/EMBOSS/index/edam.xid
  1345. share/EMBOSS/index/edam.xis
  1346. share/EMBOSS/index/edam.xisfmt
  1347. share/EMBOSS/index/edam.xisid
  1348. share/EMBOSS/index/edam.xnm
  1349. share/EMBOSS/index/edam.xns
  1350. share/EMBOSS/index/go.ent
  1351. share/EMBOSS/index/go.pxac
  1352. share/EMBOSS/index/go.pxde
  1353. share/EMBOSS/index/go.pxid
  1354. share/EMBOSS/index/go.pxis
  1355. share/EMBOSS/index/go.pxnm
  1356. share/EMBOSS/index/go.pxns
  1357. share/EMBOSS/index/go.xac
  1358. share/EMBOSS/index/go.xde
  1359. share/EMBOSS/index/go.xid
  1360. share/EMBOSS/index/go.xis
  1361. share/EMBOSS/index/go.xnm
  1362. share/EMBOSS/index/go.xns
  1363. share/EMBOSS/index/pw.ent
  1364. share/EMBOSS/index/pw.pxac
  1365. share/EMBOSS/index/pw.pxde
  1366. share/EMBOSS/index/pw.pxid
  1367. share/EMBOSS/index/pw.pxis
  1368. share/EMBOSS/index/pw.pxnm
  1369. share/EMBOSS/index/pw.xac
  1370. share/EMBOSS/index/pw.xde
  1371. share/EMBOSS/index/pw.xid
  1372. share/EMBOSS/index/pw.xis
  1373. share/EMBOSS/index/pw.xnm
  1374. share/EMBOSS/index/ro.ent
  1375. share/EMBOSS/index/ro.pxac
  1376. share/EMBOSS/index/ro.pxde
  1377. share/EMBOSS/index/ro.pxid
  1378. share/EMBOSS/index/ro.pxis
  1379. share/EMBOSS/index/ro.pxnm
  1380. share/EMBOSS/index/ro.xac
  1381. share/EMBOSS/index/ro.xde
  1382. share/EMBOSS/index/ro.xid
  1383. share/EMBOSS/index/ro.xis
  1384. share/EMBOSS/index/ro.xnm
  1385. share/EMBOSS/index/so.ent
  1386. share/EMBOSS/index/so.pxac
  1387. share/EMBOSS/index/so.pxde
  1388. share/EMBOSS/index/so.pxid
  1389. share/EMBOSS/index/so.pxis
  1390. share/EMBOSS/index/so.pxnm
  1391. share/EMBOSS/index/so.xac
  1392. share/EMBOSS/index/so.xde
  1393. share/EMBOSS/index/so.xid
  1394. share/EMBOSS/index/so.xis
  1395. share/EMBOSS/index/so.xnm
  1396. share/EMBOSS/index/swo.ent
  1397. share/EMBOSS/index/swo.pxac
  1398. share/EMBOSS/index/swo.pxde
  1399. share/EMBOSS/index/swo.pxid
  1400. share/EMBOSS/index/swo.pxis
  1401. share/EMBOSS/index/swo.pxnm
  1402. share/EMBOSS/index/swo.pxns
  1403. share/EMBOSS/index/swo.xac
  1404. share/EMBOSS/index/swo.xde
  1405. share/EMBOSS/index/swo.xid
  1406. share/EMBOSS/index/swo.xis
  1407. share/EMBOSS/index/swo.xnm
  1408. share/EMBOSS/index/swo.xns
  1409. share/EMBOSS/index/taxon.ent
  1410. share/EMBOSS/index/taxon.pxac
  1411. share/EMBOSS/index/taxon.pxgc
  1412. share/EMBOSS/index/taxon.pxid
  1413. share/EMBOSS/index/taxon.pxmgc
  1414. share/EMBOSS/index/taxon.pxrnk
  1415. share/EMBOSS/index/taxon.pxtax
  1416. share/EMBOSS/index/taxon.pxup
  1417. share/EMBOSS/index/taxon.xac
  1418. share/EMBOSS/index/taxon.xgc
  1419. share/EMBOSS/index/taxon.xid
  1420. share/EMBOSS/index/taxon.xmgc
  1421. share/EMBOSS/index/taxon.xrnk
  1422. share/EMBOSS/index/taxon.xtax
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  2128. share/EMBOSS/doc/programs/text/sixpack.txt
  2129. share/EMBOSS/doc/programs/text/sizeseq.txt
  2130. share/EMBOSS/doc/programs/text/skipredundant.txt
  2131. share/EMBOSS/doc/programs/text/skipseq.txt
  2132. share/EMBOSS/doc/programs/text/splitsource.txt
  2133. share/EMBOSS/doc/programs/text/splitter.txt
  2134. share/EMBOSS/doc/programs/text/stretcher.txt
  2135. share/EMBOSS/doc/programs/text/stssearch.txt
  2136. share/EMBOSS/doc/programs/text/supermatcher.txt
  2137. share/EMBOSS/doc/programs/text/syco.txt
  2138. share/EMBOSS/doc/programs/text/tcode.txt
  2139. share/EMBOSS/doc/programs/text/textsearch.txt
  2140. share/EMBOSS/doc/programs/text/tfextract.txt
  2141. share/EMBOSS/doc/programs/text/tfm.txt
  2142. share/EMBOSS/doc/programs/text/tfscan.txt
  2143. share/EMBOSS/doc/programs/text/tmap.txt
  2144. share/EMBOSS/doc/programs/text/tranalign.txt
  2145. share/EMBOSS/doc/programs/text/transeq.txt
  2146. share/EMBOSS/doc/programs/text/trimest.txt
  2147. share/EMBOSS/doc/programs/text/trimseq.txt
  2148. share/EMBOSS/doc/programs/text/trimspace.txt
  2149. share/EMBOSS/doc/programs/text/twofeat.txt
  2150. share/EMBOSS/doc/programs/text/union.txt
  2151. share/EMBOSS/doc/programs/text/vectorstrip.txt
  2152. share/EMBOSS/doc/programs/text/water.txt
  2153. share/EMBOSS/doc/programs/text/whichdb.txt
  2154. share/EMBOSS/doc/programs/text/wobble.txt
  2155. share/EMBOSS/doc/programs/text/wordcount.txt
  2156. share/EMBOSS/doc/programs/text/wordfinder.txt
  2157. share/EMBOSS/doc/programs/text/wordmatch.txt
  2158. share/EMBOSS/doc/programs/text/wossname.txt
  2159. share/EMBOSS/doc/programs/text/yank.txt
  2160. share/EMBOSS/doc/tutorials/emboss-gcg.ppt
  2161. share/EMBOSS/doc/tutorials/emboss-interfaces.ppt
  2162. share/EMBOSS/doc/tutorials/emboss-talk.ppt
  2163. share/EMBOSS/doc/tutorials/emboss_tut.tar.gz
  2164. share/EMBOSS/doc/programs/html/alignment_group.html
  2165. share/EMBOSS/doc/programs/html/assemblyget.html
  2166. share/EMBOSS/doc/programs/html/cachedas.html
  2167. share/EMBOSS/doc/programs/html/cachedbfetch.html
  2168. share/EMBOSS/doc/programs/html/cacheebeyesearch.html
  2169. share/EMBOSS/doc/programs/html/cacheensembl.html
  2170. share/EMBOSS/doc/programs/html/data_resources_group.html
  2171. share/EMBOSS/doc/programs/html/data_retrieval_chemistry_data_group.html
  2172. share/EMBOSS/doc/programs/html/data_retrieval_feature_data_group.html
  2173. share/EMBOSS/doc/programs/html/data_retrieval_group.html
  2174. share/EMBOSS/doc/programs/html/data_retrieval_ontology_data_group.html
  2175. share/EMBOSS/doc/programs/html/data_retrieval_resource_data_group.html
  2176. share/EMBOSS/doc/programs/html/data_retrieval_sequence_data_assembly_data_group.html
  2177. share/EMBOSS/doc/programs/html/data_retrieval_sequence_data_group.html
  2178. share/EMBOSS/doc/programs/html/data_retrieval_text_data_group.html
  2179. share/EMBOSS/doc/programs/html/data_retrieval_tool_data_group.html
  2180. share/EMBOSS/doc/programs/html/data_retrieval_url_data_group.html
  2181. share/EMBOSS/doc/programs/html/dbtell.html
  2182. share/EMBOSS/doc/programs/html/dbxcompress.html
  2183. share/EMBOSS/doc/programs/html/dbxedam.html
  2184. share/EMBOSS/doc/programs/html/dbxobo.html
  2185. share/EMBOSS/doc/programs/html/dbxreport.html
  2186. share/EMBOSS/doc/programs/html/dbxresource.html
  2187. share/EMBOSS/doc/programs/html/dbxstat.html
  2188. share/EMBOSS/doc/programs/html/dbxtax.html
  2189. share/EMBOSS/doc/programs/html/dbxuncompress.html
  2190. share/EMBOSS/doc/programs/html/density.1.density.gif
  2191. share/EMBOSS/doc/programs/html/density.2.density.gif
  2192. share/EMBOSS/doc/programs/html/density.3.density.gif
  2193. share/EMBOSS/doc/programs/html/documentation_group.html
  2194. share/EMBOSS/doc/programs/html/drfinddata.html
  2195. share/EMBOSS/doc/programs/html/drfindformat.html
  2196. share/EMBOSS/doc/programs/html/drfindid.html
  2197. share/EMBOSS/doc/programs/html/drfindresource.html
  2198. share/EMBOSS/doc/programs/html/drget.html
  2199. share/EMBOSS/doc/programs/html/drtext.html
  2200. share/EMBOSS/doc/programs/html/edamdef.html
  2201. share/EMBOSS/doc/programs/html/edamhasinput.html
  2202. share/EMBOSS/doc/programs/html/edamhasoutput.html
  2203. share/EMBOSS/doc/programs/html/edamisformat.html
  2204. share/EMBOSS/doc/programs/html/edamisid.html
  2205. share/EMBOSS/doc/programs/html/edamname.html
  2206. share/EMBOSS/doc/programs/html/embossupdate.html
  2207. share/EMBOSS/doc/programs/html/eprimer32.html
  2208. share/EMBOSS/doc/programs/html/featmerge.html
  2209. share/EMBOSS/doc/programs/html/feattext.html
  2210. share/EMBOSS/doc/programs/html/godef.html
  2211. share/EMBOSS/doc/programs/html/goname.html
  2212. share/EMBOSS/doc/programs/html/infoassembly.html
  2213. share/EMBOSS/doc/programs/html/nucleic_functional_sites_group.html
  2214. share/EMBOSS/doc/programs/html/nucleic_properties_group.html
  2215. share/EMBOSS/doc/programs/html/ontocount.html
  2216. share/EMBOSS/doc/programs/html/ontoget.html
  2217. share/EMBOSS/doc/programs/html/ontogetcommon.html
  2218. share/EMBOSS/doc/programs/html/ontogetdown.html
  2219. share/EMBOSS/doc/programs/html/ontogetobsolete.html
  2220. share/EMBOSS/doc/programs/html/ontogetroot.html
  2221. share/EMBOSS/doc/programs/html/ontogetsibs.html
  2222. share/EMBOSS/doc/programs/html/ontogetup.html
  2223. share/EMBOSS/doc/programs/html/ontoisobsolete.html
  2224. share/EMBOSS/doc/programs/html/ontology_edam_group.html
  2225. share/EMBOSS/doc/programs/html/ontology_go_group.html
  2226. share/EMBOSS/doc/programs/html/ontology_group.html
  2227. share/EMBOSS/doc/programs/html/ontology_taxonomy_group.html
  2228. share/EMBOSS/doc/programs/html/ontotext.html
  2229. share/EMBOSS/doc/programs/html/pepdigest.html
  2230. share/EMBOSS/doc/programs/html/protein_domains_group.html
  2231. share/EMBOSS/doc/programs/html/protein_functional_sites_group.html
  2232. share/EMBOSS/doc/programs/html/protein_modifications_group.html
  2233. share/EMBOSS/doc/programs/html/protein_properties_group.html
  2234. share/EMBOSS/doc/programs/html/refseqget.html
  2235. share/EMBOSS/doc/programs/html/seqcount.html
  2236. share/EMBOSS/doc/programs/html/seqxref.html
  2237. share/EMBOSS/doc/programs/html/seqxrefget.html
  2238. share/EMBOSS/doc/programs/html/servertell.html
  2239. share/EMBOSS/doc/programs/html/showserver.html
  2240. share/EMBOSS/doc/programs/html/taxget.html
  2241. share/EMBOSS/doc/programs/html/taxgetdown.html
  2242. share/EMBOSS/doc/programs/html/taxgetrank.html
  2243. share/EMBOSS/doc/programs/html/taxgetspecies.html
  2244. share/EMBOSS/doc/programs/html/taxgetup.html
  2245. share/EMBOSS/doc/programs/html/textget.html
  2246. share/EMBOSS/doc/programs/html/urlget.html
  2247. share/EMBOSS/doc/programs/html/utils_group.html
  2248. share/EMBOSS/doc/programs/html/variationget.html
  2249. share/EMBOSS/doc/programs/html/wossdata.html
  2250. share/EMBOSS/doc/programs/html/wossinput.html
  2251. share/EMBOSS/doc/programs/html/wossoperation.html
  2252. share/EMBOSS/doc/programs/html/wossoutput.html
  2253. share/EMBOSS/doc/programs/html/wossparam.html
  2254. share/EMBOSS/doc/programs/html/wosstopic.html
  2255. share/EMBOSS/doc/programs/html/xmlget.html
  2256. share/EMBOSS/doc/programs/html/xmltext.html
  2257. share/EMBOSS/doc/programs/text/assemblyget.txt
  2258. share/EMBOSS/doc/programs/text/cachedas.txt
  2259. share/EMBOSS/doc/programs/text/cachedbfetch.txt
  2260. share/EMBOSS/doc/programs/text/cacheebeyesearch.txt
  2261. share/EMBOSS/doc/programs/text/cacheensembl.txt
  2262. share/EMBOSS/doc/programs/text/dbtell.txt
  2263. share/EMBOSS/doc/programs/text/dbxcompress.txt
  2264. share/EMBOSS/doc/programs/text/dbxedam.txt
  2265. share/EMBOSS/doc/programs/text/dbxobo.txt
  2266. share/EMBOSS/doc/programs/text/dbxreport.txt
  2267. share/EMBOSS/doc/programs/text/dbxresource.txt
  2268. share/EMBOSS/doc/programs/text/dbxstat.txt
  2269. share/EMBOSS/doc/programs/text/dbxtax.txt
  2270. share/EMBOSS/doc/programs/text/dbxuncompress.txt
  2271. share/EMBOSS/doc/programs/text/drfinddata.txt
  2272. share/EMBOSS/doc/programs/text/drfindformat.txt
  2273. share/EMBOSS/doc/programs/text/drfindid.txt
  2274. share/EMBOSS/doc/programs/text/drfindresource.txt
  2275. share/EMBOSS/doc/programs/text/drget.txt
  2276. share/EMBOSS/doc/programs/text/drtext.txt
  2277. share/EMBOSS/doc/programs/text/edamdef.txt
  2278. share/EMBOSS/doc/programs/text/edamhasinput.txt
  2279. share/EMBOSS/doc/programs/text/edamhasoutput.txt
  2280. share/EMBOSS/doc/programs/text/edamisformat.txt
  2281. share/EMBOSS/doc/programs/text/edamisid.txt
  2282. share/EMBOSS/doc/programs/text/edamname.txt
  2283. share/EMBOSS/doc/programs/text/embossupdate.txt
  2284. share/EMBOSS/doc/programs/text/eprimer32.txt
  2285. share/EMBOSS/doc/programs/text/featmerge.txt
  2286. share/EMBOSS/doc/programs/text/feattext.txt
  2287. share/EMBOSS/doc/programs/text/godef.txt
  2288. share/EMBOSS/doc/programs/text/goname.txt
  2289. share/EMBOSS/doc/programs/text/infoassembly.txt
  2290. share/EMBOSS/doc/programs/text/ontocount.txt
  2291. share/EMBOSS/doc/programs/text/ontoget.txt
  2292. share/EMBOSS/doc/programs/text/ontogetcommon.txt
  2293. share/EMBOSS/doc/programs/text/ontogetdown.txt
  2294. share/EMBOSS/doc/programs/text/ontogetobsolete.txt
  2295. share/EMBOSS/doc/programs/text/ontogetroot.txt
  2296. share/EMBOSS/doc/programs/text/ontogetsibs.txt
  2297. share/EMBOSS/doc/programs/text/ontogetup.txt
  2298. share/EMBOSS/doc/programs/text/ontoisobsolete.txt
  2299. share/EMBOSS/doc/programs/text/ontotext.txt
  2300. share/EMBOSS/doc/programs/text/pepdigest.txt
  2301. share/EMBOSS/doc/programs/text/refseqget.txt
  2302. share/EMBOSS/doc/programs/text/seqcount.txt
  2303. share/EMBOSS/doc/programs/text/seqxref.txt
  2304. share/EMBOSS/doc/programs/text/seqxrefget.txt
  2305. share/EMBOSS/doc/programs/text/servertell.txt
  2306. share/EMBOSS/doc/programs/text/showserver.txt
  2307. share/EMBOSS/doc/programs/text/taxget.txt
  2308. share/EMBOSS/doc/programs/text/taxgetdown.txt
  2309. share/EMBOSS/doc/programs/text/taxgetrank.txt
  2310. share/EMBOSS/doc/programs/text/taxgetspecies.txt
  2311. share/EMBOSS/doc/programs/text/taxgetup.txt
  2312. share/EMBOSS/doc/programs/text/textget.txt
  2313. share/EMBOSS/doc/programs/text/urlget.txt
  2314. share/EMBOSS/doc/programs/text/variationget.txt
  2315. share/EMBOSS/doc/programs/text/wossdata.txt
  2316. share/EMBOSS/doc/programs/text/wossinput.txt
  2317. share/EMBOSS/doc/programs/text/wossoperation.txt
  2318. share/EMBOSS/doc/programs/text/wossoutput.txt
  2319. share/EMBOSS/doc/programs/text/wossparam.txt
  2320. share/EMBOSS/doc/programs/text/wosstopic.txt
  2321. share/EMBOSS/doc/programs/text/xmlget.txt
  2322. share/EMBOSS/doc/programs/text/xmltext.txt
  2323. @owner
  2324. @group
  2325. @mode
Collapse this list.
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • emboss>0:biology/emboss
Conflicts:
CONFLICTS:
  • qmail-ldap
  • digest
To install the port:
cd /usr/ports/biology/emboss/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/emboss
  • pkg install emboss
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: emboss
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1632518858 SHA256 (emboss/EMBOSS-6.6.0.tar.gz) = 7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e SIZE (emboss/EMBOSS-6.6.0.tar.gz) = 117962028
Packages (timestamps in pop-ups are UTC):
emboss
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest6.6.0_76.6.0_76.6.0_46.6.0_76.6.0_7n/an/an/a
FreeBSD:13:quarterly6.6.0_76.6.0_7-6.6.0_76.6.0_7n/an/an/a
FreeBSD:14:latest6.6.0_76.6.0_76.6.0_66.6.0_76.6.0_7---
FreeBSD:14:quarterly6.6.0_76.6.0_7-6.6.0_76.6.0_76.6.0_76.6.0_76.6.0_7
FreeBSD:15:latest6.6.0_76.6.0_7n/a-n/an/a6.6.0_76.6.0_7
FreeBSD:15:quarterly6.6.0_76.6.0_7n/a-n/an/a--
FreeBSD:16:latest6.6.0_76.6.0_7n/a-n/an/a--
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. clustalw : biology/clustalw
  2. primer3 : biology/primer3
  3. gmake>=4.3 : devel/gmake
  4. x11.pc : x11/libX11
  5. xpm.pc : x11/libXpm
Runtime dependencies:
  1. x11.pc : x11/libX11
  2. xpm.pc : x11/libXpm
Library dependencies:
  1. libgd.so : graphics/gd
  2. libpng.so : graphics/png
  3. libgd.so : graphics/gd
  4. libpng.so : graphics/png
  5. libpq.so.5 : databases/postgresql15-client
  6. libXm.so.4 : x11-toolkits/open-motif
This port is required by:
for Libraries

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. biology/embassy*
  2. Collapse this list of deleted ports.
for Run
  1. biology/biostar-tools
Configuration Options:
===> The following configuration options are available for emboss-6.6.0_7: DOCS=on: Build and/or install documentation MYSQL=off: MySQL database support X11=on: X11 (graphics) support ===> Use 'make config' to modify these settings
Options name:
biology_emboss
USES:
gmake libtool iconv localbase:ldflags pgsql ssl motif xorg
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. ftp://emboss.open-bio.org/pub/EMBOSS/
Collapse this list.

Number of commits found: 105 (showing only 5 on this page)

«  1 | 2 

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
08 Sep 2000 11:07:13
commit hash: fp1.3678@dev.null.freshports.orgcommit hash: fp1.3678@dev.null.freshports.orgcommit hash: fp1.3678@dev.null.freshports.orgcommit hash: fp1.3678@dev.null.freshports.org files touched by this commit		 nbm search for other commits by this committer 
Upgrade to 1.5.0
07 Sep 2000 15:02:53
commit hash: fp1.3643@dev.null.freshports.orgcommit hash: fp1.3643@dev.null.freshports.orgcommit hash: fp1.3643@dev.null.freshports.orgcommit hash: fp1.3643@dev.null.freshports.org files touched by this commit		 nbm search for other commits by this committer 
Update to emboss 1.4.0.
21 Aug 2000 11:07:37
commit hash: fp1.3099@dev.null.freshports.orgcommit hash: fp1.3099@dev.null.freshports.orgcommit hash: fp1.3099@dev.null.freshports.orgcommit hash: fp1.3099@dev.null.freshports.org files touched by this commit		 sobomax search for other commits by this committer 
USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.
12 Aug 2000 17:15:48
commit hash: fp1.2865@dev.null.freshports.orgcommit hash: fp1.2865@dev.null.freshports.orgcommit hash: fp1.2865@dev.null.freshports.orgcommit hash: fp1.2865@dev.null.freshports.org files touched by this commit		 nbm search for other commits by this committer 
Update to emboss 1.1.0, fixing some style bugs too.
31 Jul 2000 20:13:54
commit hash: fp1.2474@dev.null.freshports.orgcommit hash: fp1.2474@dev.null.freshports.orgcommit hash: fp1.2474@dev.null.freshports.orgcommit hash: fp1.2474@dev.null.freshports.org files touched by this commit		 nbm search for other commits by this committer 
Add emboss, the European Molecular Biology Open Software Suite

Number of commits found: 105 (showing only 5 on this page)

«  1 | 2 
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