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Port details
groopm Metagenomic binning suite
0.3.4_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
0.3.4Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-12-07 00:10:56
Last Update: 2019-01-07 09:44:42
SVN Revision: 489569
Also Listed In: python
License: GPLv3
GroopM is a metagenomic binning toolset. It leverages spatio-temoral
dynamics (differential coverage) to accurately (and almost automatically)
extract population genomes from multi-sample metagenomic datasets.

GroopM is largely parameter-free. Use: groopm -h for more info.

WWW: http://ecogenomics.github.io/GroopM/
SVNWeb : Homepage
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (3 items)
  1. /usr/local/share/licenses/GroopM-0.3.4_1/catalog.mk
  2. /usr/local/share/licenses/GroopM-0.3.4_1/LICENSE
  3. /usr/local/share/licenses/GroopM-0.3.4_1/GPLv3
  4. Collapse this list.
Dependency lines:
  • GroopM>0:biology/groopm

To install the port: cd /usr/ports/biology/groopm/ && make install clean
To add the package: pkg install GroopM

PKGNAME: GroopM

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1544140602
SHA256 (GroopM-0.3.4.tar.gz) = 48bdaeb9010e7d81785697a55edc394ef36c2646b310d625a24bec740f1b6080
SIZE (GroopM-0.3.4.tar.gz) = 127707


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. py27-setuptools>0 : devel/py-setuptools@py27
  2. python2.7 : lang/python27
Runtime dependencies:
  1. py27-numpy>0 : math/py-numpy@py27
  2. py27-matplotlib>=1.1.0 : math/py-matplotlib@py27
  3. py27-scipy>=0.10.1 : science/py-scipy@py27
  4. py27-tables>=2.3 : devel/py-tables@py27
  5. py27-setuptools>0 : devel/py-setuptools@py27
  6. python2.7 : lang/python27
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
python:2.7

Master Sites:
  1. https://files.pythonhosted.org/packages/source/G/GroopM/
  2. https://pypi.org/packages/source/G/GroopM/

Number of commits found: 3

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Jan 2019 09:44:42
Original commit files touched by this commit  0.3.4_1
Revision:489569
antoine search for other commits by this committer
biology/groopm fails to build with python3

PR:		234633
12 Dec 2018 01:35:36
Original commit files touched by this commit  0.3.4_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
07 Dec 2018 00:10:06
Original commit files touched by this commit  0.3.4
Revision:486812
yuri search for other commits by this committer
New port: math/groopm: Metagenomic binning suite

Number of commits found: 3

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