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Port details
groopm Metagenomic binning suite
0.3.4_3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. 0.3.4_3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-12-07 00:10:56
Last Update: 2020-08-13 20:19:24
SVN Revision: 544832
Also Listed In: python
License: GPLv3
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/GroopM-0.3.4_3/catalog.mk
  2. /usr/local/share/licenses/GroopM-0.3.4_3/LICENSE
  3. /usr/local/share/licenses/GroopM-0.3.4_3/GPLv3
Collapse this list.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}>0:biology/groopm
To install the port: cd /usr/ports/biology/groopm/ && make install clean
To add the package: pkg install GroopM
PKGNAME: GroopM
Flavors: there is no flavor information for this port.
distinfo:
Packages: (move your mouse over the cells for more information)
GroopM
ABIlatestquarterly
FreeBSD:11:aarch64-0.3.4_2
FreeBSD:11:amd640.3.4_3-
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-0.3.4_2
FreeBSD:12:amd640.3.4_30.3.4_3
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.3.4_30.3.4_3
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd640.3.4_3-
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3860.3.4_3-
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc640.3.4_3-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py37-setuptools>0 : devel/py-setuptools@py37
  2. python3.7 : lang/python37
Runtime dependencies:
  1. py37-numpy>=1.16,1<1.20,1 : math/py-numpy@py37
  2. py37-matplotlib>=1.1.0 : math/py-matplotlib@py37
  3. py37-scipy>=0.10.1 : science/py-scipy@py37
  4. py37-tables>=2.3 : devel/py-tables@py37
  5. py37-setuptools>0 : devel/py-setuptools@py37
  6. python3.7 : lang/python37
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
Expand this list (2 items)
    Collapse this list.
  1. https://files.pythonhosted.org/packages/source/G/GroopM/
  2. https://pypi.org/packages/source/G/GroopM/
  3. Collapse this list.

Number of commits found: 6

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
13 Aug 2020 19:19:24
Original commit files touched by this commit  0.3.4_3
Revision:544832
yuri search for other commits by this committer
biology/groopm: Remove python's 2.7 restriction placed here by mistake
23 Feb 2020 15:25:53
Original commit files touched by this commit  0.3.4_2
Revision:526925
antoine search for other commits by this committer
Deprecate a few ports

With hat:	portmgr
26 Jul 2019 20:46:57
Original commit files touched by this commit  0.3.4_2
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
07 Jan 2019 09:44:42
Original commit files touched by this commit  0.3.4_1
Revision:489569
antoine search for other commits by this committer
biology/groopm fails to build with python3

PR:		234633
12 Dec 2018 01:35:36
Original commit files touched by this commit  0.3.4_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
07 Dec 2018 00:10:06
Original commit files touched by this commit  0.3.4
Revision:486812
yuri search for other commits by this committer
New port: math/groopm: Metagenomic binning suite

Number of commits found: 6

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