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Port details
groopm Metagenomic binning suite
0.3.4_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 0.3.4Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Uses deprecated version of python
Expiration Date EXPIRATION DATE: 2020-08-15
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-12-07 00:10:56
Last Update: 2020-02-23 15:25:53
SVN Revision: 526925
Also Listed In: python
License: GPLv3
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
  1. /usr/local/share/licenses/GroopM-0.3.4_2/catalog.mk
  2. /usr/local/share/licenses/GroopM-0.3.4_2/LICENSE
  3. /usr/local/share/licenses/GroopM-0.3.4_2/GPLv3
Collapse this list.
Dependency lines:
  • GroopM>0:biology/groopm
To install the port: cd /usr/ports/biology/groopm/ && make install clean
To add the package: pkg install GroopM
PKGNAME: GroopM
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py27-setuptools>0 : devel/py-setuptools@py27
  2. python2.7 : lang/python27
Runtime dependencies:
  1. py27-numpy>=1.15,1<1.19,1 : math/py-numpy@py27
  2. py27-matplotlib>=1.1.0 : math/py-matplotlib@py27
  3. py27-scipy>=0.10.1 : science/py-scipy@py27
  4. py27-tables>=2.3 : devel/py-tables@py27
  5. py27-setuptools>0 : devel/py-setuptools@py27
  6. python2.7 : lang/python27
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://files.pythonhosted.org/packages/source/G/GroopM/
  2. https://pypi.org/packages/source/G/GroopM/

Number of commits found: 5

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
23 Feb 2020 15:25:53
Original commit files touched by this commit  0.3.4_2
Revision:526925
antoine search for other commits by this committer
Deprecate a few ports

With hat:	portmgr
26 Jul 2019 20:46:57
Original commit files touched by this commit  0.3.4_2
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
07 Jan 2019 09:44:42
Original commit files touched by this commit  0.3.4_1
Revision:489569
antoine search for other commits by this committer
biology/groopm fails to build with python3

PR:		234633
12 Dec 2018 01:35:36
Original commit files touched by this commit  0.3.4_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
07 Dec 2018 00:10:06
Original commit files touched by this commit  0.3.4
Revision:486812
yuri search for other commits by this committer
New port: math/groopm: Metagenomic binning suite

Number of commits found: 5

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