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non port: science/Makefile
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Number of commits found: 404 (showing only 100 on this page)

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Tue, 25 Sep 2018
[ 18:11 yuri ] Original commit   Revision:480687
480687 science/Makefile
480687 science/bagel
480687 science/bagel/Makefile
480687 science/bagel/distinfo
480687 science/bagel/files
480687 science/bagel/files/patch-src_Makefile.am
480687 science/bagel/pkg-descr
480687 science/bagel/pkg-plist
New port: science/bagel: Brilliantly Advanced General Electronic-structure
Library
Sun, 23 Sep 2018
[ 08:43 yuri ] Original commit   Revision:480461
480461 science/Makefile
480461 science/elk
480461 science/elk/Makefile
480461 science/elk/distinfo
480461 science/elk/files
480461 science/elk/files/make.inc.in
480461 science/elk/files/patch-src_Makefile
480461 science/elk/patch-Makefile
480461 science/elk/pkg-descr
New port: science/elk: All-electron full-potential linearised
augmented-planewave code
Fri, 21 Sep 2018
[ 07:11 yuri ] Original commit   Revision:480230
480230 science/Makefile
480230 science/py-PyFR
480230 science/py-PyFR/Makefile
480230 science/py-PyFR/distinfo
480230 science/py-PyFR/pkg-descr
New port: science/py-PyFR: Framework for solving advection-diffusion type
problems
Wed, 19 Sep 2018
[ 21:33 yuri ] Original commit   Revision:480113
480113 science/Makefile
480113 science/py-chempy
480113 science/py-chempy/Makefile
480113 science/py-chempy/distinfo
480113 science/py-chempy/pkg-descr
New port: science/py-chempy: Package useful useful for solving problems in
chemistry
Fri, 14 Sep 2018
[ 07:44 yuri ] Original commit   Revision:479761
479761 science/Makefile
479761 science/luscus
479761 science/luscus/Makefile
479761 science/luscus/distinfo
479761 science/luscus/files
479761 science/luscus/files/patch-CMakeLists.txt
479761 science/luscus/pkg-descr
479761 science/luscus/pkg-plist
New port: science/luscus: Molecular editor and viewer
[ 05:37 yuri ] Original commit   Revision:479760
479760 science/Makefile
479760 science/py-phono3py
479760 science/py-phono3py/Makefile
479760 science/py-phono3py/distinfo
479760 science/py-phono3py/pkg-descr
New port: science/py-phono3py: Software to calculate phonon-phonon interaction
and related properties
[ 05:01 yuri ] Original commit   Revision:479759
479759 science/Makefile
479759 science/py-phonopy
479759 science/py-phonopy/Makefile
479759 science/py-phonopy/distinfo
479759 science/py-phonopy/pkg-descr
New port: science/py-phonopy: Package for phonon calculations at harmonic and
quasi-harmonic levels
[ 03:10 yuri ] Original commit   Revision:479756
479756 science/Makefile
479756 science/py-molmod
479756 science/py-molmod/Makefile
479756 science/py-molmod/distinfo
479756 science/py-molmod/pkg-descr
New port: science/py-molmod: Collection of molecular modelling tools for python
Wed, 12 Sep 2018
[ 22:25 yuri ] Original commit   Revision:479622
479622 science/Makefile
479622 science/dftbplus
479622 science/dftbplus/Makefile
479622 science/dftbplus/distinfo
479622 science/dftbplus/files
479622 science/dftbplus/files/patch-external_xmlf90_make.dpbuild
479622 science/dftbplus/files/patch-make.config
479622 science/dftbplus/files/patch-makefile
479622 science/dftbplus/pkg-descr
479622 science/dftbplus/pkg-plist
New port: science/dftbplus: Package for performing fast atomistic simulations
[ 03:00 yuri ] Original commit   Revision:479581
479581 science/Makefile
479581 science/openmx
479581 science/openmx/Makefile
479581 science/openmx/distinfo
479581 science/openmx/files
479581 science/openmx/files/patch-Band__DFT__Col.c
479581 science/openmx/files/patch-Band__DFT__NonCol.c
479581 science/openmx/files/patch-Cluster__DFT.c
479581 science/openmx/files/patch-Cluster__DFT__ON2.c
479581 science/openmx/files/patch-Input__std.c

(Only the first 10 of 17 ports in this commit are shown above. View all ports for this commit)
New port: science/openmx: Nanoscale material simulations using density
functional theories (DFT)
Mon, 10 Sep 2018
[ 05:53 yuri ] Original commit   Revision:479360
479360 LEGAL
479360 science/Makefile
479360 science/msms
479360 science/msms/Makefile
479360 science/msms/distinfo-amd64
479360 science/msms/distinfo-i386
479360 science/msms/files
479360 science/msms/files/extract-license.awk
479360 science/msms/pkg-descr
New port: science/msms: Program to efficiently compute molecular surfaces
Sun, 9 Sep 2018
[ 20:57 yuri ] Original commit   Revision:479335
479335 science/Makefile
479335 science/lm
479335 science/lm/Makefile
479335 science/lm/distinfo
479335 science/lm/files
479335 science/lm/files/patch-Makefile
479335 science/lm/files/patch-src_c_lm_main_Main.cpp
479335 science/lm/files/patch-src_c_lm_main_runSimulation.cpp
479335 science/lm/files/patch-src_c_lm_rng_XORShift.cpp
479335 science/lm/files/patch-src_c_lm_thread_Thread.cpp

(Only the first 10 of 13 ports in this commit are shown above. View all ports for this commit)
New port: science/lm: Software for sampling trajectories of the
reaction-diffusion equations
Sat, 8 Sep 2018
[ 23:28 yuri ] Original commit   Revision:479263
479263 science/Makefile
479263 science/namd
479263 science/namd/Makefile
479263 science/namd/distinfo
479263 science/namd/files
479263 science/namd/files/patch-Makefile
479263 science/namd/files/patch-config
479263 science/namd/pkg-descr
New port: science/namd: Computer software for molecular dynamics simulation
Thu, 6 Sep 2018
[ 06:31 yuri ] Original commit   Revision:479085
479085 science/Makefile
479085 science/lammps
479085 science/lammps/Makefile
479085 science/lammps/distinfo
479085 science/lammps/pkg-descr
479085 science/lammps/pkg-plist
New port: science/lammps: Classical molecular dynamics code with a focus on
materials modeling
[ 05:14 yuri ] Original commit   Revision:479084
479084 science/Makefile
479084 science/mdynamix
479084 science/mdynamix/Makefile
479084 science/mdynamix/distinfo
479084 science/mdynamix/pkg-descr
New port: science/mdynamix: General purpose molecular dynamics code
Tue, 4 Sep 2018
[ 21:28 yuri ] Original commit   Revision:478991
478991 science/Makefile
478991 science/cp2k
478991 science/cp2k/Makefile
478991 science/cp2k/distinfo
478991 science/cp2k/files
478991 science/cp2k/files/patch-makefiles_Makefile
478991 science/cp2k/pkg-descr
New port: science/cp2k: Quantum chemistry and solid state physics software
package
[ 15:05 yuri ] Original commit   Revision:478966
478966 LEGAL
478966 science/Makefile
478966 science/atom
478966 science/atom/Makefile
478966 science/atom/distinfo
478966 science/atom/files
478966 science/atom/files/patch-arch.make.sample
478966 science/atom/pkg-descr
New port: science/atom: Program for DFT calculations in atoms
[ 15:03 yuri ] Original commit   Revision:478965
478965 science/Makefile
478965 science/libgridxc
478965 science/libgridxc/Makefile
478965 science/libgridxc/distinfo
478965 science/libgridxc/files
478965 science/libgridxc/files/patch-build.sh
478965 science/libgridxc/files/patch-gridxc.mk.in
478965 science/libgridxc/files/patch-makefile
478965 science/libgridxc/files/patch-top.gridxc.mk.in
478965 science/libgridxc/pkg-descr

(Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
New port: science/libgridxc: Library to compute the exchange and correlation
energy and potentials
[ 06:07 yuri ] Original commit   Revision:478925
478925 MOVED
478925 science/Makefile
478925 science/mpqc-mpich
478925 science/mpqc/Makefile
Remove science/mpqc-mpich: Enable MPI option in science/mpqc by default

* MPICH option in science/mpqc is renamed to MPI, because MPI exists in many
other
  ports and there's MPI_DESC predefined for it.
* MPI option in science/mpqc is made default.
Mon, 3 Sep 2018
[ 17:51 yuri ] Original commit   Revision:478886
478886 science/Makefile
478886 science/siesta
478886 science/siesta/Makefile
478886 science/siesta/distinfo
478886 science/siesta/pkg-descr
New port: science/siesta: Program to perform efficient electronic structure
calculations
[ 04:09 yuri ] Original commit   Revision:478841
478841 science/Makefile
478841 science/wannier90
478841 science/wannier90/Makefile
478841 science/wannier90/distinfo
478841 science/wannier90/files
478841 science/wannier90/files/patch-src_Makefile.2
478841 science/wannier90/pkg-descr
New port: science/wannier90: Maximally-localized Wannier functions (MLWFs) and
Wannier90
Sun, 2 Sep 2018
[ 21:10 yuri ] Original commit   Revision:478820
478820 science/Makefile
478820 science/fleur
478820 science/fleur/Makefile
478820 science/fleur/distinfo
478820 science/fleur/pkg-descr
New port: science/fleur: FLAPW code for atomic computations in quantum chemistry
and physics
[ 07:49 yuri ] Original commit   Revision:478766
478766 science/Makefile
478766 science/dalton
478766 science/dalton/Makefile
478766 science/dalton/distinfo
478766 science/dalton/files
478766 science/dalton/files/patch-DALTON_cc_crayio.c
478766 science/dalton/files/patch-cmake_ConfigArchitecture.cmake
478766 science/dalton/files/patch-cmake_SourcesDALTON.cmake
478766 science/dalton/files/patch-dalton.in
478766 science/dalton/pkg-descr

(Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
New port: science/dalton: Powerful molecular electronic structure program for
quantum chemistry
[ 06:43 yuri ] Original commit   Revision:478759
478759 science/Makefile
478759 science/teem
478759 science/teem/Makefile
478759 science/teem/distinfo
478759 science/teem/pkg-descr
478759 science/teem/pkg-plist
New port: science/teem: Libraries for representing, processing and visualizing
scientific data
Sat, 1 Sep 2018
[ 18:31 yuri ] Original commit   Revision:478713
478713 science/Makefile
478713 science/py-gpaw
478713 science/py-gpaw/Makefile
478713 science/py-gpaw/distinfo
478713 science/py-gpaw/pkg-descr
New port: science/py-gpaw:  DFT and beyond within the projector-augmented wave
method in chemistry
[ 18:17 yuri ] Original commit   Revision:478712
478712 science/Makefile
478712 science/py-ase
478712 science/py-ase/Makefile
478712 science/py-ase/distinfo
478712 science/py-ase/pkg-descr
New port: science/py-ase: Atomic simulation environment
[ 06:30 yuri ] Original commit   Revision:478654
478654 science/Makefile
478654 science/jdftx
478654 science/jdftx/Makefile
478654 science/jdftx/distinfo
478654 science/jdftx/files
478654 science/jdftx/files/patch-CMakeLists.txt
478654 science/jdftx/files/patch-core_scalar.h
478654 science/jdftx/pkg-descr
478654 science/jdftx/pkg-plist
New port: science/jdftx: Software for joint density functional theory in
chemistry
Fri, 31 Aug 2018
[ 06:45 yuri ] Original commit   Revision:478522
478522 science/Makefile
478522 science/qbox
478522 science/qbox/Makefile
478522 science/qbox/distinfo
478522 science/qbox/files
478522 science/qbox/files/freebsd.mk.in
478522 science/qbox/pkg-descr
New port: science/qbox: First-principles molecular dynamics code
Tue, 28 Aug 2018
[ 00:57 yuri ] Original commit   Revision:478276
478276 science/Makefile
478276 science/libint2
478276 science/libint2/Makefile
478276 science/libint2/distinfo
478276 science/libint2/files
478276 science/libint2/files/patch-src_bin_libint_tactic.h
478276 science/libint2/pkg-descr
478276 science/libint2/pkg-plist
New port: science/libint2: Evaluate the integrals in modern atomic and molecular
theory

Repocopy of science/libint.
science/libint is at version 1.X, is incompatible, and is used by several other
packages.
Mon, 27 Aug 2018
[ 07:56 yuri ] Original commit   Revision:478180
478180 science/Makefile
478180 science/madness
478180 science/madness/Makefile
478180 science/madness/distinfo
478180 science/madness/files
478180 science/madness/files/patch-src_CMakeLists.txt
478180 science/madness/files/patch-src_madness_world_thread.cc
478180 science/madness/files/patch-src_madness_world_worldmem.h
478180 science/madness/pkg-descr
478180 science/madness/pkg-plist
New port: science/madness: Multiresolution adaptive numeric environment for
scientific simulation
[ 06:15 yuri ] Original commit   Revision:478179
478179 science/Makefile
478179 science/datawarrior
478179 science/datawarrior/Makefile
478179 science/datawarrior/distinfo
478179 science/datawarrior/pkg-descr
New port: science/datawarrior: Chemistry-aware multi-purpose data visualization
and analysis program
Sun, 26 Aug 2018
[ 19:04 yuri ] Original commit   Revision:478163
478163 science/Makefile
478163 science/multiwfn
478163 science/multiwfn/Makefile
478163 science/multiwfn/distinfo
478163 science/multiwfn/files
478163 science/multiwfn/files/patch-init_Multiwfn.02
478163 science/multiwfn/pkg-descr
New port: science/multiwfn: Multifunctional wavefunction analysis for quantum
chemistry
Sat, 25 Aug 2018
[ 18:08 yuri ] Original commit   Revision:478077
478077 science/Makefile
478077 science/gabedit
478077 science/gabedit/Makefile
478077 science/gabedit/distinfo
478077 science/gabedit/pkg-descr
New port: science/gabedit: Graphical user interface for several chemistry
software packages
Fri, 24 Aug 2018
[ 17:54 yuri ] Original commit   Revision:477973
477973 science/Makefile
477973 science/octopus
477973 science/octopus/Makefile
477973 science/octopus/distinfo
477973 science/octopus/pkg-descr
477973 science/octopus/pkg-plist
New port: science/octopus: Scientific program aimed at the ab initio virtual
experimentation
Thu, 23 Aug 2018
[ 22:00 yuri ] Original commit   Revision:477927
477927 science/Makefile
477927 science/nwchem
477927 science/nwchem/Makefile
477927 science/nwchem/distinfo
477927 science/nwchem/pkg-descr
New port: science/nwchem: High-performance computational chemistry sotware
Tue, 21 Aug 2018
[ 04:31 yuri ] Original commit   Revision:477701
477701 science/Makefile
477701 science/qwalk
477701 science/qwalk/Makefile
477701 science/qwalk/distinfo
477701 science/qwalk/files
477701 science/qwalk/files/patch-make_FreeBSD.mk
477701 science/qwalk/pkg-descr
477701 science/qwalk/pkg-plist
New port: science/qwalk: Quantum Monte Carlo package for quantum chemistry
computations
Mon, 20 Aug 2018
[ 07:44 yuri ] Original commit   Revision:477634
477634 science/Makefile
477634 science/qmcpack
477634 science/qmcpack/Makefile
477634 science/qmcpack/distinfo
477634 science/qmcpack/files
477634 science/qmcpack/files/patch-CMakeLists.txt
477634 science/qmcpack/pkg-descr
New port: science/qmcpack: Many-body ab initio Quantum Monte Carlo code for
quantum chemstry
Sun, 19 Aug 2018
[ 23:16 yuri ] Original commit   Revision:477607
477607 science/Makefile
477607 science/chrono
477607 science/chrono/Makefile
477607 science/chrono/distinfo
477607 science/chrono/files
477607 science/chrono/files/patch-src_chrono_collision_convexdecomposition_HACDv2_dgPolyhedra.cpp
477607 science/chrono/pkg-descr
477607 science/chrono/pkg-plist
New port: science/chrono: C++ library for multi-physics simulation
Thu, 9 Aug 2018
[ 08:13 yuri ] Original commit   Revision:476726
476726 MOVED
476726 science/Makefile
476726 science/xdrawchem
476726 science/xdrawchem/Makefile
476726 science/xdrawchem/distinfo
476726 science/xdrawchem/files
476726 science/xdrawchem/pkg-descr
476726 science/xdrawchem/pkg-plist
Re-add port: science/xdrawchem: Two-dimensional molecule drawing program
Wed, 8 Aug 2018
[ 19:09 brooks ] Original commit   Revision:476658
476658 MOVED
476658 science/Makefile
476658 science/py-tensorflow
Remove broken and expired port which also depends on clang38 (on 10).
Thu, 19 Jul 2018
[ 19:19 yuri ] Original commit   Revision:474971
474971 science/Makefile
474971 science/xcrysden
474971 science/xcrysden/Makefile
474971 science/xcrysden/distinfo
474971 science/xcrysden/files
474971 science/xcrysden/files/Make.sys
474971 science/xcrysden/files/patch-Makefile
474971 science/xcrysden/pkg-descr
474971 science/xcrysden/pkg-plist
New port: science/xcrysden: Crystalline and molecular structure visualisation
program
Wed, 18 Jul 2018
[ 21:47 yuri ] Original commit   Revision:474904
474904 science/Makefile
474904 science/quantum-espresso
474904 science/quantum-espresso/Makefile
474904 science/quantum-espresso/distinfo
474904 science/quantum-espresso/files
474904 science/quantum-espresso/files/patch-clib_stack.c
474904 science/quantum-espresso/files/patch-install_extlibs__makefile
474904 science/quantum-espresso/pkg-descr
474904 science/quantum-espresso/pkg-plist
New port: science/quantum-espresso: Package for research in electronic
structure, simulation, optimization
Mon, 9 Jul 2018
[ 04:41 yuri ] Original commit   Revision:474223
474223 science/Makefile
474223 science/openstructure
474223 science/openstructure/Makefile
474223 science/openstructure/distinfo
474223 science/openstructure/files
474223 science/openstructure/files/patch-cmake__support_CopyDependencies.cmake
474223 science/openstructure/files/patch-cmake__support_FindOPENSTRUCTURE.cmake
474223 science/openstructure/files/patch-cmake__support_FindPython.cmake
474223 science/openstructure/files/patch-cmake__support_OST.cmake
474223 science/openstructure/files/patch-modules_config_base.hh

(Only the first 10 of 17 ports in this commit are shown above. View all ports for this commit)
New port: science/openstructure: Molecular modelling and visualization
environment
Sun, 8 Jul 2018
[ 04:45 yuri ] Original commit   Revision:474154
474154 science/Makefile
474154 science/coot
474154 science/coot/Makefile
474154 science/coot/distinfo
474154 science/coot/files
474154 science/coot/files/patch-src_cc-interface-image.hh
474154 science/coot/files/patch-src_rama__plot.cc
474154 science/coot/pkg-descr
474154 science/coot/pkg-plist
New port: science/coot: Crystallographic Object-Oriented Toolkit
[ 01:27 yuri ] Original commit   Revision:474150
474150 science/Makefile
474150 science/clipper
474150 science/clipper/Makefile
474150 science/clipper/distinfo
474150 science/clipper/pkg-descr
474150 science/clipper/pkg-plist
New port: science/clipper: Libraries for the organisation of crystallographic
data
[ 00:39 yuri ] Original commit   Revision:474148
474148 science/Makefile
474148 science/libssm
474148 science/libssm/Makefile
474148 science/libssm/distinfo
474148 science/libssm/pkg-descr
474148 science/libssm/pkg-plist
New port: science/libssm: C++ toolkit for superposition of macromolecules
[ 00:24 yuri ] Original commit   Revision:474147
474147 science/Makefile
474147 science/libccp4
474147 science/libccp4/Makefile
474147 science/libccp4/distinfo
474147 science/libccp4/pkg-descr
474147 science/libccp4/pkg-plist
New port: science/libccp4: Protein X-ray crystallography toolkit
Sat, 7 Jul 2018
[ 23:32 yuri ] Original commit   Revision:474143
474143 science/Makefile
474143 science/mmdb2
474143 science/mmdb2/Makefile
474143 science/mmdb2/distinfo
474143 science/mmdb2/pkg-descr
474143 science/mmdb2/pkg-plist
New port: science/mmdb2: C++ toolkit for working with macromolecular coordinate
files
Sun, 1 Jul 2018
[ 05:22 yuri ] Original commit   Revision:473652
473652 science/Makefile
473652 science/py-rmf
473652 science/py-rmf/Makefile
473652 science/py-rmf/distinfo
473652 science/py-rmf/files
473652 science/py-rmf/files/patch-CMakeLists.txt
473652 science/py-rmf/files/patch-include_CMakeLists.txt
473652 science/py-rmf/files/patch-swig_CMakeLists.txt
473652 science/py-rmf/pkg-descr
473652 science/py-rmf/pkg-plist
New port: science/py-rmf: Library to support reading and writing of Rich
Molecular Format files
Fri, 29 Jun 2018
[ 09:04 yuri ] Original commit   Revision:473535
473535 science/Makefile
473535 science/rmf
473535 science/rmf/Makefile
473535 science/rmf/distinfo
473535 science/rmf/files
473535 science/rmf/files/patch-CMakeLists.txt
473535 science/rmf/pkg-descr
473535 science/rmf/pkg-plist
New port: science/rmf: Library to support reading and writing of Rich Molecular
Format files
[ 08:34 yuri ] Original commit   Revision:473533
473533 science/Makefile
473533 science/py-ScientificPython
473533 science/py-ScientificPython/Makefile
473533 science/py-ScientificPython/distinfo
473533 science/py-ScientificPython/pkg-descr
New port: science/py-ScientificPython: Various Python modules for scientific
computing
Thu, 28 Jun 2018
[ 21:18 sunpoet ] Original commit   Revision:473515
473515 science/Makefile
473515 science/eccodes
473515 science/eccodes/Makefile
473515 science/eccodes/distinfo
473515 science/eccodes/pkg-descr
473515 science/eccodes/pkg-plist
Add eccodes 2.8.0

ecCodes is a package developed by ECMWF which provides an application
programming interface and a set of tools for decoding and encoding messages in
the following formats:
- WMO FM-92 GRIB edition 1 and edition 2
- WMO FM-94 BUFR edition 3 and edition 4
- WMO GTS abbreviated header (only decoding).

A useful set of command line tools provide quick access to the messages. C,
Fortran 90 and Python interfaces provide access to the main ecCodes
functionality.

ecCodes is an evolution of GRIB-API. It is designed to provide the user with a
simple set of functions to access data from several formats with a key/value
approach.

For GRIB encoding and decoding, the GRIB-API functionality is provided fully in
ecCodes with only minor interface and behaviour changes. Interfaces for C,
Fortran 90 and Python are all maintained as in GRIB-API. However, the GRIB-API
Fortran 77 interface is no longer available.

WWW: https://software.ecmwf.int/wiki/display/ECC
Sun, 24 Jun 2018
[ 20:05 sunpoet ] Original commit   Revision:473214
473214 science/Makefile
473214 science/py-kinematics
473214 science/py-kinematics/Makefile
473214 science/py-kinematics/distinfo
473214 science/py-kinematics/pkg-descr
Add py-kinematics 0.0.7

kinematics is Python package to perform attitude kinematics. It is written
completely in Python and only requires numpy as a runtime dependency.

WWW: https://github.com/skulumani/kinematics
Mon, 18 Jun 2018
[ 02:34 yuri ] Original commit   Revision:472666
472666 science/Makefile
472666 science/py-SimpleSpectral
472666 science/py-SimpleSpectral/Makefile
472666 science/py-SimpleSpectral/distinfo
472666 science/py-SimpleSpectral/pkg-descr
New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module
with only pyFFTW support
Sun, 17 Jun 2018
[ 21:25 yuri ] Original commit   Revision:472638
472638 science/Makefile
science/Makefile: Fix sortedness
[ 21:24 yuri ] Original commit   Revision:472636
472636 science/Makefile
472636 science/py-PyQuante
472636 science/py-PyQuante/Makefile
472636 science/py-PyQuante/distinfo
472636 science/py-PyQuante/pkg-descr
New port: science/py-PyQuante: Quantum chemistry in Python
[ 02:42 yuri ] Original commit   Revision:472591
472591 science/Makefile
472591 science/dft_tools
472591 science/dft_tools/Makefile
472591 science/dft_tools/distinfo
472591 science/dft_tools/files
472591 science/dft_tools/files/patch-CMakeLists.txt
472591 science/dft_tools/pkg-descr
472591 science/dft_tools/pkg-plist
New port: science/dft_tools: Interface to DFT codes in TRIQS
Sat, 16 Jun 2018
[ 23:24 yuri ] Original commit   Revision:472576
472576 science/Makefile
472576 science/triqs
472576 science/triqs/Makefile
472576 science/triqs/distinfo
472576 science/triqs/files
472576 science/triqs/files/patch-CMakeLists.txt
472576 science/triqs/files/patch-cmake_TRIQSConfig.cmake.in
472576 science/triqs/files/patch-triqs_CMakeLists.txt
472576 science/triqs/pkg-descr
472576 science/triqs/pkg-plist
New port: science/triqs: Toolbox for Research on Interacting Quantum Systems
[ 00:37 yuri ] Original commit   Revision:472505
472505 science/Makefile
472505 science/py-abipy
472505 science/py-abipy/Makefile
472505 science/py-abipy/distinfo
472505 science/py-abipy/pkg-descr
New port: science/py-abipy: Library for analyzing the results produced by ABINIT
Fri, 15 Jun 2018
[ 23:49 yuri ] Original commit   Revision:472503
472503 science/Makefile
472503 science/py-pymatgen
472503 science/py-pymatgen/Makefile
472503 science/py-pymatgen/distinfo
472503 science/py-pymatgen/pkg-descr
New port: science/py-pymatgen: Python Materials Genomics is a robust materials
analysis code
[ 22:28 yuri ] Original commit   Revision:472499
472499 science/Makefile
472499 science/py-spglib
472499 science/py-spglib/Makefile
472499 science/py-spglib/distinfo
472499 science/py-spglib/pkg-descr
New port: science/py-spglib: Library for finding and handling crystal symmetries
[ 17:42 yuri ] Original commit   Revision:472472
472472 science/Makefile
472472 science/spglib
472472 science/spglib/Makefile
472472 science/spglib/distinfo
472472 science/spglib/pkg-descr
472472 science/spglib/pkg-plist
New port: science/spglib: C library for finding and handling crystal symmetries
Thu, 14 Jun 2018
[ 05:52 yuri ] Original commit   Revision:472355
472355 science/Makefile
472355 science/atompaw
472355 science/atompaw/Makefile
472355 science/atompaw/distinfo
472355 science/atompaw/pkg-descr
New port: science/atompaw: Tool for projector augmented wave functions for
molecular simulations
[ 05:49 yuri ] Original commit   Revision:472353
472353 MOVED
472353 science/Makefile
472353 science/abinit
472353 science/abinit/Makefile
472353 science/abinit/distinfo
472353 science/abinit/files/makefile_macros
472353 science/abinit/files/patch-Makefile.in
472353 science/abinit/files/patch-bindings_parser_ab_dtset_c.c
472353 science/abinit/files/patch-bindings_parser_parser.mk
472353 science/abinit/files/patch-config+m4+init.m4

(Only the first 10 of 18 ports in this commit are shown above. View all ports for this commit)
Re-add port: science/abinit: Full-featured atomic-scale first-principles
simulation software

I couldn't make MPI work, created a bug report.
Will add DOCS and EXAMPLES options later.

PR:		219025
Thu, 7 Jun 2018
[ 00:40 rene ] Original commit   Revision:471894
471894 MOVED
471894 science/Makefile
471894 science/orthanc
471894 science/orthanc-dicomweb
471894 science/orthanc-postgresql
471894 science/orthanc-webviewer
Remove science/orthanc and dependent ports, it has expired
Fri, 25 May 2018
[ 21:44 tcberner ] Original commit   Revision:470870
470870 MOVED
470870 archivers/hs-tar/Makefile
470870 archivers/hs-tar/distinfo
470870 archivers/hs-zip-archive/Makefile
470870 archivers/hs-zip-archive/distinfo
470870 archivers/hs-zlib-bindings/Makefile
470870 archivers/hs-zlib-enum/Makefile
470870 archivers/hs-zlib/Makefile
470870 audio/hs-ALUT/Makefile
470870 audio/hs-OpenAL/Makefile

(Only the first 10 of 966 ports in this commit are shown above. View all ports for this commit)
Update lang/ghc 8.4.2 and the hs-* ports the newer versions

* Update lang/ghc to 8.4.2
* Update the boostrap compiler to 8.4.1
* Update the many hs-* ports
* Bump the rest

Thanks a lot to arrowd for doing all the heavy lifting :)

PR:		227968
Exp-run by:	antoine
Submitted by:	arrowd
Differential Revision:	https://reviews.freebsd.org/D15005
Mon, 14 May 2018
[ 00:16 yuri ] Original commit   Revision:469842
469842 science/Makefile
469842 science/py-MDAnalysisTests
469842 science/py-MDAnalysisTests/Makefile
469842 science/py-MDAnalysisTests/distinfo
469842 science/py-MDAnalysisTests/pkg-descr
New port: science/py-MDAnalysisTests: Test code and the trajectory data for test
cases of MDAnalysis
[ 00:15 yuri ] Original commit   Revision:469841
469841 science/Makefile
469841 science/py-MDAnalysis
469841 science/py-MDAnalysis/Makefile
469841 science/py-MDAnalysis/distinfo
469841 science/py-MDAnalysis/files
469841 science/py-MDAnalysis/files/patch-setup.py
469841 science/py-MDAnalysis/pkg-descr
New port: science/py-MDAnalysis: Python library to analyze molecular dynamics
trajectories
Sun, 13 May 2018
[ 20:32 yuri ] Original commit   Revision:469829
469829 science/Makefile
469829 science/py-gsd
469829 science/py-gsd/Makefile
469829 science/py-gsd/distinfo
469829 science/py-gsd/files
469829 science/py-gsd/files/patch-gsd_gsd.c
469829 science/py-gsd/pkg-descr
New port: science/py-gsd: GSD (General Simulation Data) file format for Python
[ 17:14 yuri ] Original commit   Revision:469806
469806 science/Makefile
469806 science/py-mmtf-python
469806 science/py-mmtf-python/Makefile
469806 science/py-mmtf-python/distinfo
469806 science/py-mmtf-python/pkg-descr
New port: science/py-mmtf-python: MMTF (Macromolecular Transmission Format)
Python API
Mon, 7 May 2018
[ 19:36 pi ] Original commit   Revision:469326
469326 science/Makefile
469326 science/mcxtrace-comps
469326 science/mcxtrace-comps/Makefile
469326 science/mcxtrace-comps/distinfo
469326 science/mcxtrace-comps/pkg-descr
469326 science/mcxtrace-comps/pkg-plist
New port: science/mcxtrace-comps

McXtrace - Monte Carlo ray tracing simulations of X-ray experiments.

McXtrace is a tool for simulating X-ray instrumentation and experiments
using a ray-tracing formalism. Currently the main use of McXtrace
is in the field of synchrotron beamline instrumentation design, but
various other uses have been found, for instance for designing X-ray
telescopes or for laboratory sources.

This port contains the McXtrace component library.

WWW: http://www.mcxtrace.org

PR:		206506
Submitted by:	Erik B. Knudsen <erkn@fysik.dtu.dk>
Thu, 26 Apr 2018
[ 20:39 adridg ] Original commit   Revision:468383
468383 science/Makefile
468383 science/dlib-cpp
468383 science/dlib-cpp/Makefile
468383 science/dlib-cpp/distinfo
468383 science/dlib-cpp/pkg-descr
468383 science/dlib-cpp/pkg-plist
468383 science/py-dlib
468383 science/py-dlib/Makefile
468383 science/py-dlib/distinfo
468383 science/py-dlib/files

(Only the first 10 of 13 ports in this commit are shown above. View all ports for this commit)
New ports science/dlib-cpp and science/py-dlib (Python bindings for the former)

Changed from the reviewed form:
 - fixed typo's
 - added support for suffixed Boost::Python
 - removed commented-out lines from patch

Submitted by:	arrowsvc (6yearold@gmail.com, new maintainer)
Reviewed by:	tcberner, adridg
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D14798
Wed, 18 Apr 2018
[ 06:51 yuri ] Original commit   Revision:467683
467683 science/Makefile
467683 science/antioch
467683 science/antioch/Makefile
467683 science/antioch/distinfo
467683 science/antioch/files
467683 science/antioch/files/patch-Makefile.am
467683 science/antioch/files/patch-configure.ac
467683 science/antioch/files/patch-share_Makefile.am
467683 science/antioch/pkg-descr
467683 science/antioch/pkg-plist
New port: science/antioch: C++ Chemical Kinetics, Thermodynaimics, and Transport
Library
[ 04:59 yuri ] Original commit   Revision:467674
467674 science/Makefile
467674 science/metaphysicl
467674 science/metaphysicl/Makefile
467674 science/metaphysicl/distinfo
467674 science/metaphysicl/pkg-descr
467674 science/metaphysicl/pkg-plist
New port: science/metaphysicl: Metaprogramming, operator-overloaded classes for
numerical simulations
Mon, 16 Apr 2018
[ 18:15 jwb ] Original commit   Revision:467501
467501 science/Makefile
467501 science/fsom
467501 science/fsom/Makefile
467501 science/fsom/distinfo
467501 science/fsom/files
467501 science/fsom/files/Makefile
467501 science/fsom/files/patch-fsom.c
467501 science/fsom/pkg-descr
fsom: Tiny C library for managing SOM (Self-Organizing Maps) neural networks

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15103
Mon, 9 Apr 2018
[ 18:32 tcberner ] Original commit   Revision:466877
466877 MOVED
466877 science/Makefile
466877 science/kalzium
466877 science/kalzium/Makefile
466877 science/kalzium/distinfo
466877 science/kalzium/pkg-plist
466877 science/step
466877 science/step/Makefile
466877 science/step/distinfo
466877 science/step/files

(Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
New port: science/step, science/kalzium

This is the current version of KDE Applications <foo>.
Note that users of KDE SC4 should stick with <foo>-kde4.
Sat, 7 Apr 2018
[ 16:33 sunpoet ] Original commit   Revision:466740
466740 science/Makefile
466740 science/rubygem-rgeo-shapefile
466740 science/rubygem-rgeo-shapefile/Makefile
466740 science/rubygem-rgeo-shapefile/distinfo
466740 science/rubygem-rgeo-shapefile/pkg-descr
Add rubygem-rgeo-shapefile 1.0.0

RGeo::Shapefile is an optional module for RGeo for reading geospatial data from
ESRI shapefiles.

WWW: https://github.com/rgeo/rgeo-shapefile
[ 16:33 sunpoet ] Original commit   Revision:466739
466739 science/Makefile
466739 science/rubygem-rgeo-proj4
466739 science/rubygem-rgeo-proj4/Makefile
466739 science/rubygem-rgeo-proj4/distinfo
466739 science/rubygem-rgeo-proj4/pkg-descr
Add rubygem-rgeo-proj4 1.0.0

RGeo::Proj4 contains proj.4 extensions to the RGeo gem.

WWW: https://github.com/rgeo/rgeo-proj4
[ 16:32 sunpoet ] Original commit   Revision:466738
466738 science/Makefile
466738 science/rubygem-rgeo-geojson
466738 science/rubygem-rgeo-geojson/Makefile
466738 science/rubygem-rgeo-geojson/distinfo
466738 science/rubygem-rgeo-geojson/pkg-descr
Add rubygem-rgeo-geojson 2.0.0

RGeo::GeoJSON is an extension to the RGeo gem that provides GeoJSON encoding and
decoding.

WWW: https://github.com/rgeo/rgeo-geojson
[ 16:32 sunpoet ] Original commit   Revision:466737
466737 science/Makefile
466737 science/rubygem-rgeo
466737 science/rubygem-rgeo/Makefile
466737 science/rubygem-rgeo/distinfo
466737 science/rubygem-rgeo/pkg-descr
Add rubygem-rgeo 1.0.0

RGeo is a geospatial data library for Ruby.

RGeo is a key component for writing location-aware applications in the Ruby
programming language. At its core is an implementation of the industry standard
OGC Simple Features Specification, which provides data representations of
geometric objects such as points, lines, and polygons, along with a set of
geometric analysis operations. This makes it ideal for modeling geolocation
data. It also supports a suite of optional add-on modules that provide various
geolocation-related services.

Use the core rgeo gem to:
- Represent spatial and geolocation data objects such as points, lines, and
  polygons in your Ruby application.
- Perform standard spatial analysis operations such as finding intersections,
  creating buffers, and computing lengths and areas.
- Correctly handle spherical geometry, and compute geographic projections for
  map display and data analysis.
- Read and write location data in the WKT and WKB representations used by
  spatial databases.

WWW: https://github.com/rgeo/rgeo
Mon, 2 Apr 2018
[ 08:43 makc ] Original commit   Revision:466210
466210 science/Makefile
466210 science/py-openpiv
466210 science/py-openpiv/Makefile
466210 science/py-openpiv/distinfo
466210 science/py-openpiv/pkg-descr
Add new port science/py-openpiv:

Python module for Particle Image Velocimetry (PIV) image analysis
and post-processing.

WWW: http://www.openpiv.net/
Thu, 29 Mar 2018
[ 20:37 yuri ] Original commit   Revision:465928
465928 science/Makefile
465928 science/py-quantities
465928 science/py-quantities/Makefile
465928 science/py-quantities/distinfo
465928 science/py-quantities/pkg-descr
New port: science/py-quantities: Support for physical quantities with units,
based on numpy
Mon, 26 Mar 2018
[ 23:13 yuri ] Original commit   Revision:465645
465645 science/Makefile
465645 science/libcint
465645 science/libcint/Makefile
465645 science/libcint/distinfo
465645 science/libcint/files
465645 science/libcint/files/patch-CMakeLists.txt
465645 science/libcint/files/patch-src_c2f.h
465645 science/libcint/pkg-descr
New port: science/libcint: General GTO integrals for quantum chemistry
[ 09:39 yuri ] Original commit   Revision:465571
465571 science/Makefile
465571 science/py-OpenFermion
465571 science/py-OpenFermion/Makefile
465571 science/py-OpenFermion/distinfo
465571 science/py-OpenFermion/pkg-descr
New port: science/py-OpenFermion: Electronic structure package for quantum
computers
[ 09:04 yuri ] Original commit   Revision:465565
465565 MOVED
465565 astro/Makefile
465565 astro/siril
465565 astro/siril/Makefile
465565 science/Makefile
465565 science/siril
science/siril: Move to astro/siril; Mark broken on i386; Add OPENMP category
Sat, 24 Mar 2018
[ 06:38 yuri ] Original commit   Revision:465427
465427 science/Makefile
465427 science/py-pyosf
465427 science/py-pyosf/Makefile
465427 science/py-pyosf/distinfo
465427 science/py-pyosf/files
465427 science/py-pyosf/files/patch-setup.py
465427 science/py-pyosf/pkg-descr
New port: science/py-pyosf: Python lib for synching with OpenScienceFramework
projects
Thu, 22 Mar 2018
[ 08:23 yuri ] Original commit   Revision:465265
465265 science/Makefile
465265 science/rdkit
465265 science/rdkit/Makefile
465265 science/rdkit/distinfo
465265 science/rdkit/files
465265 science/rdkit/files/patch-CMakeLists.txt
465265 science/rdkit/pkg-descr
465265 science/rdkit/pkg-plist
New port: science/rdkit: Collection of cheminformatics and machine-learning
software
Thu, 1 Mar 2018
[ 11:29 yuri ] Original commit   Revision:463296
463296 MOVED
463296 science/Makefile
463296 science/py-veusz
463296 science/py-veusz/Makefile
463296 science/veusz
science/veusz: Unbroke; Renamed to science/py-veusz.

It was breaking because of wrong python shebang.

This port is a python port, renamed per section 6.17.

Unbroke:
* Added USES=shebangfix and SHEBANG_FILES
* Added stripping (post-install)

Additional changes:
* Added USE_QT4
* Added USE_PYTHON=concurrent

Approved by:	tcberner (mentor, implicit)
Approved by:	portmgr (port compliance, infrastructure)
Thu, 22 Feb 2018
[ 19:03 tcberner ] Original commit   Revision:462619
462619 MOVED
462619 Mk/Uses/kde.mk
462619 accessibility/Makefile
462619 accessibility/jovie
462619 accessibility/jovie-kde4
462619 accessibility/jovie-kde4/Makefile
462619 accessibility/kaccessible
462619 accessibility/kaccessible-kde4
462619 accessibility/kaccessible-kde4/Makefile
462619 accessibility/kdeaccessibility-kde4/Makefile

(Only the first 10 of 486 ports in this commit are shown above. View all ports for this commit)
Give the KDE SC4 applications ports a -kde4 suffix

In order to make room for the up-to-date version of the KDE Desktop and its
applications move the KDE Application ports based on Qt4.

PR:		225992
Exp-run by:	antoine
Reviewed by:	rakuco, adridg
Differential Revision:	https://reviews.freebsd.org/D14413
Sun, 4 Feb 2018
[ 19:00 yuri ] Original commit   Revision:460947
460947 science/Makefile
460947 science/siril
460947 science/siril/Makefile
460947 science/siril/distinfo
460947 science/siril/files
460947 science/siril/files/patch-Makefile.am
460947 science/siril/pkg-descr
460947 science/siril/pkg-plist
New port: science/siril: Astronomical image processing software

See details here: https://free-astro.org/index.php/Siril

Approved by:	adamw (mentor)
Differential Revision:	https://reviews.freebsd.org/D14190
Tue, 19 Dec 2017
[ 19:49 yuri ] Original commit   Revision:456763
456763 MOVED
456763 science/Makefile
456763 science/py-pymol
456763 science/py-pymol/Makefile
456763 science/py-pymol/distinfo
456763 science/py-pymol/files/patch-create__shadertext.py
456763 science/py-pymol/files/patch-setup.py
456763 science/py-pymol/pkg-descr
456763 science/py-pymol/pkg-plist
Re-added port: science/py-pymol: OpenGL based molecular visualization system
(existed 2002/08/13-2014/09/01, deleted in r366862)

Approved by:	adamw (mentor)
Differential Revision:	https://reviews.freebsd.org/D12902
[ 16:04 yuri ] Original commit   Revision:456732
456732 science/MOOSE-neural-simulator
456732 science/MOOSE-neural-simulator/Makefile
456732 science/MOOSE-neural-simulator/distinfo
456732 science/MOOSE-neural-simulator/files
456732 science/MOOSE-neural-simulator/files/patch-moose-gui_mgui.py
456732 science/MOOSE-neural-simulator/pkg-descr
456732 science/MOOSE-neural-simulator/pkg-plist
456732 science/Makefile
New port: science/MOOSE-neural-simulator: Multiphysics Object Oriented
Simulation Environment

Multiphysics Object Oriented Simulation Environment

MOOSE-neural-simulator allows to simulate
- chemical and biochemical reactions
- networks of neurons
- neural networks

This project is commonly referred to as MOOSE, in the capitalized form.
There is another science project called MOOSE, completely unrelated to this one,
which will also be ported.
MOOSE-neural-simulator is a candidate for the future 'chemistry' category in
case it will be approved.

Approved by:	adamw (mentor)
Differential Revision:	https://reviews.freebsd.org/D13539
[ 00:03 yuri ] Original commit   Revision:456696
456696 science/Makefile
456696 science/PETSc
456696 science/PETSc/Makefile
456696 science/PETSc/distinfo
456696 science/PETSc/files
456696 science/PETSc/files/patch-makefile
456696 science/PETSc/pkg-descr
456696 science/PETSc/pkg-plist
New port: science/PETSc: Suite of data structures and routines from Argonne
National Laboratory

Approved by:	adamw (mentor)
Differential Revision:	https://reviews.freebsd.org/D13527
Mon, 18 Dec 2017
[ 12:31 dbn ] Original commit   Revision:456626
456626 science/Makefile
456626 science/R-cran-fastICA
456626 science/R-cran-fastICA/Makefile
456626 science/R-cran-fastICA/distinfo
456626 science/R-cran-fastICA/pkg-descr
science/R-cran-fastICA: FastICA Algorithms to Perform ICA and Projection Pursuit

Generated by:	portcran (0.1.7)
Tue, 5 Dec 2017
[ 19:15 yuri ] Original commit   Revision:455608
455608 science/Makefile
455608 science/mcxtrace
455608 science/mcxtrace/Makefile
455608 science/mcxtrace/distinfo
455608 science/mcxtrace/files
455608 science/mcxtrace/files/patch-cmake_Modules_InstallMCCODE.cmake
455608 science/mcxtrace/pkg-descr
455608 science/mcxtrace/pkg-plist
New port: science/mcxtrace: Monte Carlo X-ray tracing package

PR:		206505
Submitted by:	Erik B Knudsen <erkn@fysik.dtu.dk>
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13216
Sun, 3 Dec 2017
[ 21:26 rodrigo ] Original commit   Revision:455488
455488 science/Makefile
455488 science/aircraft-datcom
455488 science/aircraft-datcom/Makefile
455488 science/aircraft-datcom/distinfo
455488 science/aircraft-datcom/pkg-descr
455488 science/aircraft-datcom/pkg-plist
Add new port science/aircraft-datcom
aircraft-datcom is a modified version of USAF Aircraft DATCOM
The goal of the project is to update the code and make it more usable by the end
users

PR:		207928
Submitted by:	Michael Danilov <mike.d.ft402@gmail.com>
[ 19:29 yuri ] Original commit   Revision:455424
455424 science/ALPSCore
455424 science/ALPSCore/Makefile
455424 science/ALPSCore/distinfo
455424 science/ALPSCore/pkg-descr
455424 science/ALPSCore/pkg-plist
455424 science/Makefile
New port: science/ALPSCore: Generic algorithms and utilities for condensed
matter physics

PR:		223850
Submitted by:	Michael Danilov <mike.d.ft402@gmail.com>
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13237
Thu, 23 Nov 2017
[ 05:58 yuri ] Original commit   Revision:454740
454740 science/Makefile
454740 science/chemps2
454740 science/chemps2/Makefile
454740 science/chemps2/distinfo
454740 science/chemps2/files
454740 science/chemps2/files/patch-CMakeLists.txt
454740 science/chemps2/pkg-descr
454740 science/chemps2/pkg-plist
New port: science/chemps2: Spin-adapted implementation of DMRG for ab initio
quantum chemistry

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13100
Sat, 18 Nov 2017
[ 05:12 yuri ] Original commit   Revision:454407
454407 science/Makefile
454407 science/gdma
454407 science/gdma/Makefile
454407 science/gdma/distinfo
454407 science/gdma/pkg-descr
454407 science/gdma/pkg-plist
New port: science/gdma: Anthony Stone's Gaussian Distributed Multipole Analysis

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13110
Thu, 16 Nov 2017
[ 18:27 yuri ] Original commit   Revision:454321
454321 science/Makefile
454321 science/py-scoria
454321 science/py-scoria/Makefile
454321 science/py-scoria/distinfo
454321 science/py-scoria/pkg-descr
New port: science/py-scoria: Lightweight molecule manipulation codebase

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13119

Number of commits found: 404 (showing only 100 on this page)

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