| non port: science/Makefile |
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SVNWeb
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Number of commits found: 557 (showing only 100 on this page) |
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Fri, 18 Jun 2021
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[ 21:28 jwb (Jason W. Bacon) ]  98807e0
science/csvtk: Cross-platform and ultrafast toolkit for CSV/TSV processing
CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics
and data science.
People usually use spreadsheet software like MS Excel to process table data.
However this is all by clicking and typing, which is not automated and is
time-consuming to repeat, especially when you want to apply similar operations
with different datasets or purposes.
csvtk is convenient for rapid data investigation and also easy to integrate
into analysis pipelines. It could save you lots of time in (not) writing
Python/R scripts.
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Tue, 8 Jun 2021
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[ 18:20 ygy (Guangyuan Yang) ] e7091be
science/orthanc: Hook to the build
PR: 242546
Fixes: d0359493ee0443e596be74b336ea12e6db936a01
Approved by: lwhsu (mentor, implicit), portmgr (fix build)
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Sat, 5 Jun 2021
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[ 20:01 yuri (Yuri Victorovich) ] 05a1e2c
science/xcfun: New port: Exchange-correlation functionals with arbitrary-order
derivatives
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[ 20:01 yuri (Yuri Victorovich) ] f97053f
science/py-pyscf: New port: Python module for quantum chemistry
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Mon, 26 Apr 2021
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[ 10:17 thierry (Thierry Thomas) ] fc6c793
science/frontistr adding FrontISTR
This is an Open-Source Large-Scale Parallel FEM Program for Nonlinear
Structural Analysis.
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Sun, 25 Apr 2021
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[ 20:35 sunpoet (Po-Chuan Hsieh) ] a15ff33
science/py-skrebate: Add py-skrebate 0.62
This package includes a scikit-learn-compatible Python implementation of ReBATE,
a suite of Relief-based feature selection algorithms for Machine Learning. These
Relief-Based algorithms (RBAs) are designed for feature weighting/selection as
part of a machine learning pipeline (supervised learning). Presently this
includes the following core RBAs: ReliefF, SURF, SURF*, MultiSURF*, and
MultiSURF. Additionally, an implementation of the iterative TuRF mechanism and
VLSRelief is included.
WWW: https://github.com/EpistasisLab/scikit-rebate
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Wed, 7 Apr 2021
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[ 08:09 mat (Mathieu Arnold) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above.  )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 mat (Mathieu Arnold) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Wed, 24 Feb 2021
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[ 07:39 yuri ]  
New port: science/libecpint: Library for the evaluation of integrals over
effective core potentials
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Sat, 20 Feb 2021
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[ 00:44 yuri ] (Only the first 10 of 11 ports in this commit are shown above. )
New port: science/dakota: Interface between analysis codes & iterative systems
analysis methods
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Sat, 6 Feb 2021
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[ 20:42 sunpoet ]
Sort SUBDIRs
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Tue, 2 Feb 2021
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[ 00:48 yuri ]
New port: science/thermofun: Code for calculating thermodynamic properties of
materials
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Mon, 1 Feb 2021
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[ 12:52 rene ] (Only the first 10 of 19 ports in this commit are shown above. )
Remove expired ports:
2021-01-31 deskutils/orage: Unsupported upstream, cannot work with XFCE 4.16
2021-01-31 sysutils/rubygem-chef-config12
2021-01-31 mail/openwebmail: Does not use modern Perl syntax and no development
activity since 2006
2021-01-31 sysutils/rubygem-ohai8
2021-01-31 deskutils/xfce4-volumed: Unsupported upstream, cannot work with XFCE
4.16
2021-01-31 sysutils/rubygem-chef12: Please use sysutils/rubygem-chef instead
2021-01-31 x11/xfce4-embed-plugin: Unsupported upstream, cannot work with XFCE
4.16
2021-01-31 net-p2p/py-transmissionrpc: Unmaintained and dead upstream, use
net-p2p/py-transmission-rpc instead
2021-01-31 science/xfce4-equake-plugin: Unsupported upstream, cannot work with
XFCE 4.16
2021-01-31 sysutils/xfce4-kbdleds-plugin: Unsupported upstream, cannot work with
XFCE 4.16
2021-01-31 textproc/py-gfm: No longer maintained by upstream, please use
textproc/py-cmarkgfm instead
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Thu, 21 Jan 2021
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[ 03:53 yuri ]
New port: science/py-nilearn: Statistical learning for neuroimaging in Python
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[ 03:21 yuri ]
New port: science/py-dipy: Python toolbox for analysis of MR diffusion imaging
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[ 02:07 yuri ]
New port: science/py-nibabel: Read/write some common neuroimaging file formats
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Sun, 17 Jan 2021
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[ 12:10 rene ]
Remove expired ports:
2021-01-14 net-im/telegram: Upstream unmaintained; please migrate to
net-im/telegram-cli
2021-01-14 science/dlpoly-classic: MASTERSITE gone; possibly replaced by
https://gitlab.com/DL_POLY_Classic/dl_poly?
2021-01-15 security/py-gtts-token: Obsolete, please use audio/py-gtts instead
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Thu, 14 Jan 2021
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[ 19:14 yuri ]
New port: science/shelxle: Graphical user interface for small-molecule structure
refinement
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Sun, 3 Jan 2021
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[ 19:58 sunpoet ]
Add py-tobler 0.5.4
tobler is a library for areal interpolation and dasymetric mapping. The name is
an homage to the legendary geographer Waldo Tobler.
WWW: https://pysal.org/tobler/
WWW: https://github.com/pysal/tobler
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[ 19:58 sunpoet ]
Add py-spaghetti 1.4.2
SPAtial GrapHs: nETworks, Topology, & Inference
Spaghetti is an open-source Python library for the analysis of network-based
spatial data. Originating from the network module in PySAL (Python Spatial
Analysis Library), it is under active development for the inclusion of newly
proposed methods for building graph-theoretic networks and the analysis of
network events.
WWW: https://pysal.org/spaghetti/
WWW: https://github.com/pysal/spaghetti
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[ 19:58 sunpoet ]
Add py-segregation 1.4.0
Segregation Analysis, Inference, and Decomposition with PySAL
The PySAL segregation package is a tool for analyzing patterns of urban
segregation. With only a few lines of code, segregation users can calculate over
40 segregation measures from simple to state-of-the art.
WWW: https://pysal.org/segregation/
WWW: https://github.com/pysal/segregation
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[ 19:58 sunpoet ]
Add py-libpysal 4.3.0
Python Spatial Analysis Library Core
libpysal offers four modules that form the building blocks in many upstream
packages in the PySAL family:
- Spatial Weights: libpysal.weights
- Input-and output: libpysal.io
- Computational geometry: libpysal.cg
- Built-in example datasets libpysal.examples
WWW: https://pysal.org/libpysal/
WWW: https://github.com/pysal/libpysal
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[ 19:58 sunpoet ]
Add py-inequality 1.0.0
inequality implements measures for the analysis of inequality over space and
time and is part of the PySAL family.
WWW: https://inequality.readthedocs.io/en/latest/
WWW: https://github.com/pysal/inequality
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[ 19:57 sunpoet ]
Add py-esda 2.3.1
ESDA: Exploratory Spatial Data Analysis
ESDA is an open-source Python library for the exploratory analysis of spatial
data. A subpackage of PySAL (Python Spatial Analysis Library), it is under
active development and includes methods for global and local spatial
autocorrelation analysis.
WWW: https://pysal.org/esda/
WWW: https://github.com/pysal/esda
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[ 19:57 sunpoet ]
Add py-access 1.1.3
Spatial Access for PySAL
Whether you work with data in health, retail, employment or other domains,
spatial accessibility measures help identify potential spatial mismatches
between the supply and demand of services. They indicate how close demand
locations are to supply locations.
WWW: https://access.readthedocs.io/en/latest/
WWW: https://github.com/pysal/access
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Thu, 31 Dec 2020
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[ 15:07 rene ] (Only the first 10 of 30 ports in this commit are shown above. )
Remove expired ports not depending on Python 2.7:
2020-12-31 devel/arm-none-eabi-gdb: This is an old, obsolete version of gdb
2020-12-31 devel/pecl-weakref2: PHP 7.2 extension
2020-12-31 graphics/py-imageio24: Use graphics/py-imageio instead
2020-12-31 mail/bogofilter-tc: TokyoCabinet is being phased out in favor of
KyotoCabinet.
2020-12-31 net/pecl-yaz: PHP 7.2 extension
2020-12-31 print/cloudprint: Google Cloud Print is being shut down by Google by
end of 2020
2020-12-31 science/py-eccodes-python: Use science/py-eccodes instead
2020-12-31 sysutils/cfengine-masterfiles312: EOL
2020-12-31 sysutils/cfengine-masterfiles313: EOL
2020-12-31 sysutils/cfengine312: EOL
2020-12-31 sysutils/cfengine313: EOL
2020-12-31 sysutils/rubygem-chef-zero5: Please use sysutils/rubygem-chef-zero
instead
2020-12-31 sysutils/syslog-ng325: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng326: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng328: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng329: Reduction of syslog-ng ports to one
2020-12-31 www/flashplayer: Depends on a deprecated port
2020-12-31 www/linux-flashplayer: Deprecated by upstream
2020-12-31 www/mediawiki133: Upstream end of life
2020-12-31 www/mediawiki134: Upstream end of life
2020-12-31 www/py-aiohttp2: Use www/py-aiohttp instead
sysutils/drm-legacy-kmod is left in for now.
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Tue, 22 Dec 2020
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[ 11:48 thierry ]
Adding jupyter-jsmol, a JSmol viewer widget for Jupyter Notebooks and
JupyterLab, to bue used by SageMath 9.3.
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Sat, 19 Dec 2020
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[ 20:04 sunpoet ]
Add py-eccodes 1.0.0 (copied from py-eccodes-python)
Changes: https://github.com/ecmwf/eccodes-python/blob/develop/CHANGELOG.rst
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Thu, 10 Dec 2020
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[ 21:28 sunpoet ]
Add py-netcdf-flattener 1.2.0
The flattener takes as input and output NetCDF Dataset objects, which the user
can create or open from ".nc" files using the netCDF4 API.
WWW: https://gitlab.eumetsat.int/open-source/netcdf-flattener
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Tue, 1 Dec 2020
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[ 20:09 rene ] (Only the first 10 of 25 ports in this commit are shown above. )
Remove expired ports:
2020-11-30 databases/datamodeler: depends on expiring java/openjfx8-devel
2020-11-30 devel/gradle4: only needed for expiring biology/igv and
java/openjfx8-devel
2020-11-30 devel/py-astroid1: Use devel/py-astroid instead
2020-11-30 devel/pylint1: Use devel/pylint instead
2020-11-30 german/mediathekview: depends on expiring java/openjfx8-devel
2020-11-30 java/openjfx8-devel: No longer maintained upstream
2020-11-30 java/openjfx8-scenebuilder: depends on expiring java/openjfx8-devel
2020-11-30 net-im/py-sleekxmpp: Upstream archived and advices to use
net-im/py-slixmpp
2020-12-01 net-mgmt/zabbix44-agent: End of Life
2020-12-01 net-mgmt/zabbix44-frontend: End of Life
2020-12-01 net-mgmt/zabbix44-java: End of Life
2020-12-01 net-mgmt/zabbix44-proxy: End of Life
2020-12-01 net-mgmt/zabbix44-server: End of Life
2020-11-30 print/jabref: depends on expiring java/openjfx8-devel
2020-11-30 science/datawarrior: depends on expiring java/openjfx8-devel
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Thu, 26 Nov 2020
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[ 20:46 thierry ] (Only the first 10 of 21 ports in this commit are shown above. )
Upgrade Code_Aster to 14.6.0-1.
This implies:
- french /aster builds fine with clang, but it seg-faults: switched to Gcc
- ASTK is upgraded to 2019.0-1
- math/mumps is upgraded to 5.1.2-aster7
- TFEL/MFront is now required, but when the compilers of tfel and aster are
different, it cannot be linked
. recopopy science/tfel to science/tfel-edf and depends on science/tfel-edf
. science/tfel-edf is built by Gcc, from the sources included in Aster's
tarball
. register the conflicts
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Sun, 8 Nov 2020
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[ 02:56 yuri ]
New port: science/py-segyio: Python binding for segyio, the seismic data library
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[ 00:27 yuri ]
New port: science/segyio: Library to interact with SEG-Y & Seismic Unix
formatted seismic data
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Fri, 9 Oct 2020
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[ 03:42 yuri ]
New port: science/axom: Infrastructure for development of multi-physics
applications and tools
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Thu, 8 Oct 2020
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[ 19:30 yuri ]
New port: science/conduit: Simplified data exchange for HPC simulations
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Sat, 19 Sep 2020
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[ 13:01 rene ] (Only the first 10 of 199 ports in this commit are shown above. )
Remove expired ports:
2020-09-15 audio/abraca: Uses deprecated version of python
2020-09-15 audio/ardour5: Uses deprecated version of python
2020-09-15 audio/cplay: Uses deprecated version of python
2020-09-15 audio/cpp-xmms2: Uses deprecated version of python
2020-09-15 audio/p5-xmms2: Uses deprecated version of python
2020-09-15 biology/haplohseq: Uses deprecated version of python
2020-09-15 biology/tophat: Uses deprecated version of python
2020-09-15 chinese/ibus-array: Uses deprecated version of python
2020-09-15 comms/congruity: Uses deprecated version of python
2020-09-15 comms/libbtbb: Uses deprecated version of python
2020-09-15 comms/quisk: Uses deprecated version of python
2020-09-15 databases/mtools-mongodb: Uses deprecated version of python
2020-09-15 databases/mydbf2mysql: Uses deprecated version of python (Only the first 15 lines of the commit message are shown above )
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Sun, 13 Sep 2020
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[ 19:55 yuri ]
New port: science/py-geometric: Geometry optimization for quantum chemistry
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Thu, 27 Aug 2020
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[ 11:25 rene ] (Only the first 10 of 44 ports in this commit are shown above. )
Remove expired ports:
2020-08-26 audio/timidity++-tcltk: Broken for more than 6 months
2020-08-26 biology/pbcopper: Broken for more than 6 months
2020-08-26 devel/ace: Broken for more than 6 months
2020-08-26 devel/bin86: Broken for more than 6 months
2020-08-26 devel/erlang-oserl: Broken for more than 6 months
2020-08-20 emulators/qemu40: Please consider using qemu or qemu41
2020-08-26 games/linux-darwinia-demo: Broken for more than 6 months
2020-08-26 games/linux-defcon: Broken for more than 6 months
2020-08-26 games/linux-uplink-demo: Broken for more than 6 months
2020-08-26 games/xevil: Broken for more than 6 months
2020-08-26 games/xminesweep: Broken for more than 6 months
2020-08-26 graphics/backfract: Broken for more than 6 months
2020-08-26 japanese/kanjipad: Broken for more than 6 months (Only the first 15 lines of the commit message are shown above )
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Sat, 15 Aug 2020
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[ 10:50 rene ] (Only the first 10 of 219 ports in this commit are shown above. )
Remove deprecated ports:
2020-08-15 archivers/py-backports.lzma: Uses deprecated version of python
2020-08-15 archivers/py-bup: Uses deprecated version of python
2020-08-15 archivers/py-librtfcomp: Uses deprecated version of python
2020-08-15 audio/blop-lv2: Uses deprecated version of python
2020-08-15 audio/bs2b-lv2: Uses deprecated version of python
2020-08-15 audio/py-gmusicproxy: Uses deprecated version of python
2020-08-15 audio/py-karaoke: Uses deprecated version of python
2020-08-15 audio/py-openal: Uses deprecated version of python
2020-08-15 audio/py-py-jack: Uses deprecated version of python
2020-08-15 audio/py-xmms2: Uses deprecated version of python
2020-08-15 audio/triceratops-lv2: Uses deprecated version of python
2020-08-15 biology/py-biom-format: Uses deprecated version of python
2020-08-15 comms/py-bulksms: Uses deprecated version of python (Only the first 15 lines of the commit message are shown above )
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Tue, 9 Jun 2020
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[ 18:53 yuri ]
New port: science/py-pygmo2: Python platform to perform parallel computations of
optimisation tasks
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Sat, 30 May 2020
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[ 00:57 tobik ] (Only the first 10 of 11 ports in this commit are shown above. )
Clean up some things
Reported by: portscan
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Thu, 28 May 2020
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[ 22:05 jmd ]
new port: science/xtb
xtb is a semiempirical extended tight-binding program package with
application in computational chemistry and matrials science.
Port is configured to use OpenBLAS to facilitate performance.
WWW: https://github.com/grimme-lab/xtb
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Tue, 26 May 2020
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[ 16:45 yuri ]
New port: science/fastjet: Package for jet finding in pp and e+e- collisions
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[ 16:21 yuri ]
New port: science/hepmc3: Event record for High Energy Physics Monte Carlo
generators/simulation
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Wed, 20 May 2020
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[ 02:27 yuri ]
Re-add port: science/cp2k: Quantum chemistry and solid state physics software
package; Update 6.1.0 -> 7.1.0-20200518
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Tue, 19 May 2020
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[ 08:21 yuri ]
Re-add port: science/abinit: Full-featured atomic-scale first-principles
simulation software
The taball for the 8.10.3 version was replaced on the upstream website with
significant updates in it.
The new tarball doesn't compile.
I preserved the previous 8.10.3 version tarball so that the package can build.
The new, 9.x version is upcoming.
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Sat, 16 May 2020
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[ 10:49 sunpoet ]
Add py-liac-arff 2.4.0
The liac-arff module implements functions to read and write ARFF files in
Python. It was created in the Connectionist Artificial Intelligence Laboratory
(LIAC), which takes place at the Federal University of Rio Grande do Sul
(UFRGS), in Brazil.
ARFF (Attribute-Relation File Format) is an file format specially created for
describe datasets which are used commonly for machine learning experiments and
softwares. This file format was created to be used in Weka, the best
representative software for machine learning automated experiments.
WWW: https://github.com/renatopp/liac-arff
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Fri, 15 May 2020
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[ 03:33 yuri ]
New port: science/py-moltemplate: Tool to prepare simulations of molecules,
complex molecular assemblies
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Thu, 14 May 2020
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[ 01:05 yuri ]
New port: science/ergo: Quantum chemistry program for large-scale atomic
calculations
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Tue, 5 May 2020
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[ 15:38 rene ] (Only the first 10 of 492 ports in this commit are shown above. )
Remove expired ports:
Adjusted for ports rescued since r534032
2020-05-05 audio/festvox-czech: Broken for more than 6 months
2020-05-05 audio/gkrellmvolume2: Broken for more than 6 months
2020-05-05 audio/mixmos: Broken for more than 6 months
2020-05-05 audio/mma: Broken for more than 6 months
2020-05-05 audio/pd-cyclone: Broken for more than 6 months
2020-05-05 audio/shorten: Broken for more than 6 months
2020-05-05 audio/taglib-sharp: Broken for more than 6 months
2020-05-05 audio/xhippo: Broken for more than 6 months
2020-05-05 biology/consed: Broken for more than 6 months
2020-05-05 biology/plinkseq: Broken for more than 6 months
2020-05-05 biology/seqtools: Broken for more than 6 months (Only the first 15 lines of the commit message are shown above )
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[ 03:58 tobik ]
Sort
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[ 01:19 yuri ]
New port: science/votca: CSG and XTP: libraries for atomistic simulations
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Mon, 4 May 2020
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[ 19:55 yuri ]
New port: science/plumed: PLUgin for MolEcular Dynamics
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Sun, 3 May 2020
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[ 20:58 yuri ]
New port: science/py-kliff: KIM-based Learning-Integrated Fitting Framework
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[ 19:38 yuri ]
New port: science/py-kim-query: Helper routines for querying the OpenKIM
repository
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Tue, 21 Apr 2020
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[ 19:33 sunpoet ]
Add py-scikit-optimize 0.7.4
Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very)
expensive and noisy black-box functions. It implements several methods for
sequential model-based optimization. skopt aims to be accessible and easy to use
in many contexts.
WWW: https://github.com/scikit-optimize/scikit-optimize
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Tue, 14 Apr 2020
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[ 15:30 yuri ]
science/ncnn: Move to misc/ncnn; Update 20200226 -> 20200413
Reported by: portscout (update)
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Thu, 12 Mar 2020
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[ 01:05 yuri ]
New port: science/qiskit-aer: Simulator for quantum circuits, including noise
models
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Sat, 22 Feb 2020
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[ 19:08 rene ] (Only the first 10 of 125 ports in this commit are shown above. )
Remove expired ports, all Python-2.7-only:
2020-02-17 audio/decibel-audio-player: Old, uses EOLed python27
2020-02-17 audio/soundconverter: Old, uses EOLed python27
2020-02-19 cad/linuxcnc-devel: Broken, uses EOLed python27
2020-02-19 databases/monetdb: Broken, uses EOLed python27
2020-02-19 databases/py-cql: Broken, uses EOLed python27
2020-02-18 databases/zodb3: Old, uses EOLed python27
2020-02-17 deskutils/gourmet: Old, uses EOLed python27
2020-02-18 devel/py-Products.PlacelessTranslationService: Old, uses EOLed
python27
2020-02-18 devel/py-Products.ZopeVersionControl: Old, uses EOLed python27
2020-02-18 devel/py-Products.statusmessages: Old, uses EOLed python27
2020-02-18 devel/py-collective.z3cform.datetimewidget: Old, uses EOLed python27
2020-02-20 devel/py-five.formlib: Old, uses EOLed python27
2020-02-18 devel/py-five.localsitemanager: Old, uses EOLed python27 (Only the first 15 lines of the commit message are shown above )
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Tue, 28 Jan 2020
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[ 18:13 thierry ]
Adding R-cran-FAdist, a R package with a collection of probability distributions
that are sometimes used in hydrology, used by math/rkward-kde for its non-
regression tests.
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Mon, 27 Jan 2020
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[ 15:34 rene ] (Only the first 10 of 220 ports in this commit are shown above. )
Remove expired ports:
2020-01-27 accessibility/py-papi: Unmaintained, uses EOLed python27
2020-01-27 archivers/py-czipfile: Unmaintained, uses EOLed python27
2020-01-27 audio/boodler: Unmaintained, uses EOLed python27
2020-01-27 audio/dir2ogg: Unmaintained, uses EOLed python27
2020-01-27 audio/jokosher: Unmaintained, uses EOLed python27
2020-01-27 audio/mpdbrowser: Unmaintained, uses EOLed python27
2020-01-27 audio/nekobee: Unmaintained, uses EOLed python27
2020-01-27 audio/patchage: Unmaintained, uses EOLed python27
2020-01-27 audio/py-ao: Unmaintained, uses EOLed python27
2020-01-27 audio/py-id3: Unmaintained, uses EOLed python27
2020-01-27 audio/py-shout: Unmaintained, uses EOLed python27
2020-01-27 audio/py-speex: Unmaintained, uses EOLed python27
2020-01-27 audio/pytone: Unmaintained, uses EOLed python27 (Only the first 15 lines of the commit message are shown above )
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Sun, 26 Jan 2020
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[ 10:07 yuri ]
New port: science/py-h5json: Tools and library for representing HDF5 in JSON
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Sat, 18 Jan 2020
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[ 18:23 sunpoet ]
Add py-pygeometa 0.5.0
pygeometa is a Python package to generate metadata for geospatial datasets.
WWW: https://github.com/geopython/pygeometa
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[ 18:23 sunpoet ]
Add py-pycsw 2.4.2
pycsw is an OGC CSW server implementation written in Python. Started in 2010
(more formally announced in 2011), pycsw allows for the publishing and discovery
of geospatial metadata via numerous APIs (CSW 2/CSW 3, OpenSearch, OAI-PMH,
SRU), providing a standards-based metadata and catalogue component of spatial
data infrastructures. pycsw is Open Source, released under an MIT license, and
runs on all major platforms (Windows, Linux, Mac OS X).
WWW: https://pycsw.org/
WWW: https://github.com/geopython/pycsw
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[ 18:23 sunpoet ]
Add py-geolinks 0.2.0
geolinks provides utilities to deal with geospatial links.
WWW: https://github.com/geopython/geolinks
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Wed, 15 Jan 2020
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[ 16:09 yuri ]
Move cad/elmerfem -> science/elmerfem
Also:
* Update COMMENT to reflect how their website decribes it
* Update WWW
* Group USExx lines
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Fri, 10 Jan 2020
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[ 20:59 rene ] (Only the first 10 of 39 ports in this commit are shown above. )
Remove expired ports:
2020-01-10 astro/viking: Depends on broken and expiring graphics/mapnik
2020-01-10 audio/slv2: Broken for more than 5 months
2020-01-10 audio/triceratops-lv2: Broken for more than 5 months
2020-01-10 cad/brickutils: Broken for more than 3 months, unmaintained
2020-01-10 deskutils/zanshin: Broken for more than 5 months
2020-01-10 devel/elixir-gen_state_machine: Broken for more than 6 months
2020-01-10 devel/elixir-swarm: Depends on broken and expiring
devel/elixir-gen_state_machine
2020-01-10 devel/erlang-clique: Depends on broken and expiring
devel/erlang-cuttlefish
2020-01-10 devel/erlang-gen_rpc: Broken for more than 6 months
2020-01-10 devel/erlang-msgpack: Broken for more than 6 months
2020-01-10 devel/ocaml-deriving-ocsigen: Broken for more than 6 months
2020-01-10 devel/p5-rpm-build-perl: Broken for more than 7 months
2020-01-10 devel/shedskin: Broken for more than 3 months, unmaintained (Only the first 15 lines of the commit message are shown above )
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Thu, 9 Jan 2020
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[ 16:48 yuri ]
New port: science/cdk: Chemistry Development Kit
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Wed, 1 Jan 2020
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[ 11:46 rene ] (Only the first 10 of 11 ports in this commit are shown above. )
Resurrect ports depending on devel/openmp.
These ports will transition transparantly to openmp from base once
FreeBSD 12.0 reaches end-of-life.
Reported by: jbeich [1] [2]
[1] https://lists.freebsd.org/pipermail/svn-ports-head/2019-May/210482.html
[2] https://lists.freebsd.org/pipermail/svn-ports-head/2019-December/229648.html
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Tue, 31 Dec 2019
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[ 17:00 rene ] (Only the first 10 of 116 ports in this commit are shown above. )
Remove expired ports:
2019-12-31 accessibility/linux-c6-atk: Superseded by CentOS 7
2019-12-31 audio/exaile-devel: this port is older than audio/exaile
2019-12-31 audio/linux-c6-alsa-lib: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-plugins-oss: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-plugins-pulseaudio: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-utils: Superseded by CentOS 7
2019-12-31 audio/linux-c6-flac: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libaudiofile: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libogg: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libsndfile: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libvorbis: Superseded by CentOS 7
2019-12-31 audio/linux-c6-mikmod: Superseded by CentOS 7
2019-12-31 audio/linux-c6-nas-libs: Superseded by CentOS 7 (Only the first 15 lines of the commit message are shown above )
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Sun, 29 Dec 2019
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[ 12:46 sunpoet ]
Add py-geomet 0.2.1
GeoMet converts GeoJSON to WKT/WKB (Well-Known Text/Binary), and vice versa.
Extended WKB/WKT are also supported. Conversion functions are exposed through
idiomatic load/loads/dump/dumps interfaces.
GeoMet is intended to cover all common use cases for dealing with 2D, 3D, and 4D
geometries (including 'Z', 'M', and 'ZM').
WWW: https://github.com/geomet/geomet
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Sun, 3 Nov 2019
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[ 01:27 yuri ]
New port: science/highfive: Header-only C++ HDF5 interface
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Fri, 1 Nov 2019
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[ 12:06 zeising ]
Remove deprecated ports
Remove deprecated ports depending on the soon to be removed
x11/libXxf86misc and graphics/libGLw
2019-11-01 games/xpilot-ng-client: Depends on deprecated x11/libXxf86misc
2019-11-01 science/xmakemol: Depends on expiring graphics/libGLw
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Wed, 16 Oct 2019
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[ 15:29 rene ] (Only the first 10 of 369 ports in this commit are shown above. )
Remove expired ports:
2019-10-16 archivers/freetar: Unfetchable, unmaintained
2019-10-16 archivers/hffzip: Unfetchable, unmaintained
2019-10-16 archivers/hpack.non-usa.only: Unfetchable, unmaintained
2019-10-16 archivers/untar: Unfetchable, unmaintained
2019-10-16 astro/gpsdrive: Unfetchable, unmaintained
2019-10-16 astro/planets: Unfetchable, unmaintained
2019-10-16 audio/ascd: Unfetchable, unmaintained
2019-10-16 audio/audiotag: Unfetchable, unmaintained
2019-10-16 audio/gmidimonitor: Unfetchable, unmaintained
2019-10-16 audio/gmpc-lyricwiki: Unfetchable, unmaintained
2019-10-16 audio/jack_mixer: Unfetchable, unmaintained
2019-10-16 audio/jmusic: Unfetchable, unmaintained
2019-10-16 audio/maplay: Unfetchable, unmaintained (Only the first 15 lines of the commit message are shown above )
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Sun, 22 Sep 2019
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[ 19:06 jwb ]
science/packmol: Pack molecules in defined regions of space
PACKMOL creates an initial point for molecular dynamics simulations by packing
molecules in defined regions of space. The packing guarantees that short range
repulsive interactions do not disrupt the simulations.
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Sat, 31 Aug 2019
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[ 08:30 sunpoet ]
Sort SUBDIRs
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Tue, 27 Aug 2019
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[ 04:08 yuri ]
Move science/py-onnx -> math/py-onnx
math is a more appropriate category, but neural networks is really
an emerging field in itself and it probably deserves the category
of its own.
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Mon, 12 Aug 2019
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[ 16:44 yuri ]
New port: science/py-tensorflow-estimator: TensorFlow Estimator, an API to
simplify machine learning programming
Dependencies are unusual for science/py-tensorflow-estimator:
science/py-tensorflow imports science/py-tensorflow-estimator in its python
code,
but science/py-tensorflow-estimator is a separate project that depends on
science/py-tensorflow
in order to build.
PR: 226400
Submitted by: Anthony <amzo1337@gmail.com>
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Thu, 8 Aug 2019
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[ 21:05 yuri ]
New port: science/py-chainer-chemistry: Library for deep learning in biology and
chemistry
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[ 20:07 yuri ]
New port: science/py-chainer: Deep learning framework
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[ 17:53 yuri ]
New port: science/py-onnx: Open Neural Network eXchange
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Tue, 6 Aug 2019
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[ 15:28 yuri ] (Only the first 10 of 36 ports in this commit are shown above. )
Re-add science/py-tensorflow: Computation using data flow graphs for scalable
machine learning
Many thanks to Anthony who was highly persistent and skillful in getting the
Tensorflow build on FreeBSD!
PR: 226400
Submitted by: Anthony <amzo1337@gmail.com>
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Fri, 2 Aug 2019
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[ 18:44 yuri ]
Hook up science/openkim-models to build.
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Sat, 20 Jul 2019
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[ 21:57 yuri ]
New port: science/ncnn: High-performance neural network inference framework
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[ 16:51 yuri ]
New port: science/wwplot: Plotting tool for experimental physics classes
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Fri, 19 Jul 2019
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[ 17:51 yuri ]
New port: science/kim-api: Framework for reliable, reproducible, portable
molecular simulations
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Thu, 11 Jul 2019
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[ 16:50 kai ]
New port: science/py-ruffus
The Ruffus module is a lightweight way to add support for running
computational pipelines.
Computational pipelines are often conceptually quite simple, especially if
we breakdown the process into simple stages, or separate tasks.
Each stage or task in a computational pipeline is represented by a Python
function. Each Python function can be called in parallel to run multiple
jobs.
Ruffus was originally designed for use in bioinformatics to analyse multiple
genome data sets.
WWW: http://www.ruffus.org.uk
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Fri, 28 Jun 2019
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[ 06:57 mat ]
Remove dupplicate port.
Pointy hat: yuri
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[ 03:51 yuri ]
New port: science/molden: Program for molecular and electronic structure
visualization
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Sun, 9 Jun 2019
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[ 03:26 yuri ]
New port: science/smoldyn: Biochemical simulator for molecular diffusion,
surface interactions
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Sun, 26 May 2019
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[ 04:08 yuri ]
New port: science/opensph: Library and graphical tools for running SPH and
N-body simulations
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Sat, 25 May 2019
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[ 22:02 sunpoet ]
Add py-eccodes-python 0.9.0
Python 3 interface to encode and decode GRIB and BUFR files via the ECMWF
ecCodes library.
Features:
- reads and writes GRIB 1 and 2 files,
- reads and writes BUFR 3 and 4 files,
- supports all modern versions of Python 3.7, 3.6, 3.5 and PyPy3,
- works on most Linux distributions and MacOS, the ecCodes C-library is the only
system dependency,
- PyPI package with no install time build (binds with CFFI ABI level, in-line
mode),
- supports writing the index of a GRIB file to disk, to save a full-file scan on
open.
WWW: https://github.com/ecmwf/eccodes-python
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Sat, 18 May 2019
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[ 05:40 yuri ]
New port: science/libvdwxc: Van der Waals density functional (DFT) library
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Thu, 16 May 2019
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[ 16:00 yuri ]
New port: science/simgrid: Simulator of the behavior of large-scale distributed
systems
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Sat, 11 May 2019
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[ 20:29 yuri ]
New port: science/nest: Simulator for spiking neural network models
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Fri, 3 May 2019
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[ 06:14 yuri ]
New port: science/apbs: Electrostatic and solvation properties for complex
molecules
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Wed, 1 May 2019
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[ 07:16 yuri ]
New port: science/pagmo2: Platform to perform parallel computations of
optimization tasks
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Sat, 6 Apr 2019
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[ 16:27 yuri ]
New port: science/cp2k-data: Data for cp2k quantum chemistry package
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Sun, 31 Mar 2019
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[ 08:24 yuri ]
New port: science/py-qcengine: Quantum chemistry program executor and IO
standardizer (QCSchema)
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[ 08:12 yuri ]
New port: science/py-qcelemental: Essentials for quantum chemistry
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Number of commits found: 557 (showing only 100 on this page) |
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