Number of commits found: 441 (showing only 100 on this page)

1 | 2 | 3 | 4 | 5  »  

Remove KDE4, part 5
2018-12-31 korean/kde4-l10n: KDE4 is EOL upstream
2018-12-31 net/kget-kde4: KDE4 is EOL upstream
2018-12-31 net/kdenetwork-strigi-analyzers-kde4: KDE4 is EOL upstream
2018-12-31 net/zeroconf-ioslave-kde4: KDE4 is EOL upstream
2018-12-31 net/libkfbapi: Qt4 has been EOL since december 2015
2018-12-31 net/kdenetwork-kde4: KDE4 is EOL upstream
2018-12-31 net/kwooty: Qt4 has been EOL since december 2015
2018-12-31 net/kdenetwork-filesharing-kde4: KDE4 is EOL upstream
2018-12-31 net/libmediawiki-kde4: KDE4 is EOL upstream
2018-12-31 net/kio-upnp-ms: Qt4 has been EOL since december 2015
2018-12-31 net/libkvkontakte-kde4: KDE4 is EOL upstream
2018-12-31 net/krfb-kde4: KDE4 is EOL upstream
2018-12-31 net/smb4k-kde4: Qt4 has been EOL since december 2015
2018-12-31 net/krdc-kde4: KDE4 is EOL upstream

(Only the first 15 lines of the commit message are shown above )

Add new port science/scidavis:

Cross-platform program for data analysis and visualization.

WWW: http://scidavis.sourceforge.net

New port: science/vipster: Crystalline and molecular structure visualisation
program

New port: science/agrum: Graphical modeler for Bayesian networks, influence
diagrams, etc

New port: science/h5z-zfp: Registered ZFP compression plugin for HDF5

New port: science/py-GPyOpt: Bayesian optimization toolbox based on GPy

New port: science/py-GPy: Gaussian process toolbox

New port: science/py-paramz: Parameterization framework

New port: science/drawxtl: Crystal structure visualization tool

Remove expired ports:
2018-12-10 net/g2ipmsg: GNOME 2 application
2018-12-10 net/grdesktop: GNOME 2 application
2018-12-10 textproc/gnome-spell: GNOME 2 application
2018-12-10 textproc/sagasu: GNOME 2 application
2018-12-10 deskutils/planner: GNOME 2 application
2018-12-10 deskutils/multisync: GNOME 2 application
2018-12-10 deskutils/drivel: GNOME 2 application
2018-12-10 deskutils/notecase: GNOME 2 application
2018-12-10 deskutils/gtodo: GNOME 2 application
2018-12-10 deskutils/gtweakui: GNOME 2 application
2018-12-10 deskutils/gnotime: GNOME 2 application
2018-12-10 deskutils/gruler: GNOME 2 application
2018-12-10 japanese/gjiten: GNOME 2 application
2018-12-10 graphics/truevision: GNOME 2 application

(Only the first 15 lines of the commit message are shown above )

Add py-pygeodesy 18.11.12

PyGeodesy is a pure Python implementation of geodesy tools for various
ellipsoidal and spherical earth models using precision trigonometric,
vector-based and approximate methods for geodetic (lat-/longitude) and
geocentric cartesian (x/y/z) coordinates.

WWW: https://github.com/mrJean1/PyGeodesy

New port: science/yoda: Particle physics package with classes for data analysis,
histogramming

New port: science/quantum-espresso-pseudopotentials: Pseudopotentials for use
with Quantum Espresso

New port: science/berkeleygw: Scientific program aimed at the ab initio virtual
experimentation

Only a serial version for now.

New port: science/opensim-core: Software for modeling of musculoskeletal
structures

New port: science/simbody: Multibody dynamics library for (bio)mechanical
systems simulation

Survival analysis in Python, including Kaplan Meier, Nelson Aalen and regression

WWW: https://github.com/CamDavidsonPilon/lifelines/

New port: science/sparta: Gas simulator: SPARTA DSMC software package

New port: science/esys-particle: Particle-based numerical modelling software

bft, ecs, fvm, mei and ncs have been merged to code_saturne.

New port: science/liggghts: Discrete element method particle simulation software

New port: science/latte: Quantum chemistry: Density functional tight binding
molecular dynamics

New port: science/gpaw-setups: Setups (data files) for py-gpaw, the DFT quantum
chemistry software

New port: science/coordgenlibs: Schrodinger-developed 2D coordinate generation

New port: science/maeparser: Parser for Schrodinger Maestro files

New port: science/molsketch: 2D molecule editor

New port: science/erkale: Quantum chemistry program to solve the electronic
structure of atoms

New port: science/py-avogadrolibs: Python bindings for Avogadro2 chemistry
libraries

New port: science/mmtf: C++ implementation of the MMTF API, decoder and encoder

New port: science/avogadro2: Chemical editor and visualization application

New port: science/avogadrolibs: Avogadro2 libraries for chemical editor and
visualization applications

New port: science/libmsym: Molecular point group symmetry library

New port: science/wxmacmolplt: Graphical user interface principally for the
GAMESS program

Re-add port: science/gamess-us: General Atomic and Molecular Electronic
Structure System (US)

It used to be in science/gamess and was removed in 2014.

New port: science/simint: Obara-Saika (OS) method of calculating electron
repulsion integrals

New port: science/molgif: Tool to create GIF animations of molecules

biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/

Port changes:
* Take maintainership
* Implement the 'benchmarks' target, and stop installing benchmarks
* Add USES=gmake
* Update license
* Change MASTER_SITES and WWW to https
* Silence some commands

New port: science/bagel: Brilliantly Advanced General Electronic-structure
Library

New port: science/elk: All-electron full-potential linearised
augmented-planewave code

New port: science/py-PyFR: Framework for solving advection-diffusion type
problems

New port: science/py-chempy: Package useful useful for solving problems in
chemistry

New port: science/luscus: Molecular editor and viewer

New port: science/py-phono3py: Software to calculate phonon-phonon interaction
and related properties

New port: science/py-phonopy: Package for phonon calculations at harmonic and
quasi-harmonic levels

New port: science/py-molmod: Collection of molecular modelling tools for python

New port: science/dftbplus: Package for performing fast atomistic simulations

New port: science/openmx: Nanoscale material simulations using density
functional theories (DFT)

New port: science/msms: Program to efficiently compute molecular surfaces

New port: science/lm: Software for sampling trajectories of the
reaction-diffusion equations

New port: science/namd: Computer software for molecular dynamics simulation

New port: science/lammps: Classical molecular dynamics code with a focus on
materials modeling

New port: science/mdynamix: General purpose molecular dynamics code

New port: science/cp2k: Quantum chemistry and solid state physics software
package

New port: science/atom: Program for DFT calculations in atoms

New port: science/libgridxc: Library to compute the exchange and correlation
energy and potentials

Remove science/mpqc-mpich: Enable MPI option in science/mpqc by default

* MPICH option in science/mpqc is renamed to MPI, because MPI exists in many
other
  ports and there's MPI_DESC predefined for it.
* MPI option in science/mpqc is made default.

New port: science/siesta: Program to perform efficient electronic structure
calculations

New port: science/wannier90: Maximally-localized Wannier functions (MLWFs) and
Wannier90

New port: science/fleur: FLAPW code for atomic computations in quantum chemistry
and physics

New port: science/dalton: Powerful molecular electronic structure program for
quantum chemistry

New port: science/teem: Libraries for representing, processing and visualizing
scientific data

New port: science/py-gpaw:  DFT and beyond within the projector-augmented wave
method in chemistry

New port: science/py-ase: Atomic simulation environment

New port: science/jdftx: Software for joint density functional theory in
chemistry

New port: science/qbox: First-principles molecular dynamics code

New port: science/libint2: Evaluate the integrals in modern atomic and molecular
theory

Repocopy of science/libint.
science/libint is at version 1.X, is incompatible, and is used by several other
packages.

New port: science/madness: Multiresolution adaptive numeric environment for
scientific simulation

New port: science/datawarrior: Chemistry-aware multi-purpose data visualization
and analysis program

New port: science/multiwfn: Multifunctional wavefunction analysis for quantum
chemistry

New port: science/gabedit: Graphical user interface for several chemistry
software packages

New port: science/octopus: Scientific program aimed at the ab initio virtual
experimentation

New port: science/nwchem: High-performance computational chemistry sotware

New port: science/qwalk: Quantum Monte Carlo package for quantum chemistry
computations

New port: science/qmcpack: Many-body ab initio Quantum Monte Carlo code for
quantum chemstry

New port: science/chrono: C++ library for multi-physics simulation

Re-add port: science/xdrawchem: Two-dimensional molecule drawing program

Remove broken and expired port which also depends on clang38 (on 10).

New port: science/xcrysden: Crystalline and molecular structure visualisation
program

New port: science/quantum-espresso: Package for research in electronic
structure, simulation, optimization

New port: science/openstructure: Molecular modelling and visualization
environment

New port: science/coot: Crystallographic Object-Oriented Toolkit

New port: science/clipper: Libraries for the organisation of crystallographic
data

New port: science/libssm: C++ toolkit for superposition of macromolecules

New port: science/libccp4: Protein X-ray crystallography toolkit

New port: science/mmdb2: C++ toolkit for working with macromolecular coordinate
files

New port: science/py-rmf: Library to support reading and writing of Rich
Molecular Format files

New port: science/rmf: Library to support reading and writing of Rich Molecular
Format files

New port: science/py-ScientificPython: Various Python modules for scientific
computing

Add eccodes 2.8.0

ecCodes is a package developed by ECMWF which provides an application
programming interface and a set of tools for decoding and encoding messages in
the following formats:
- WMO FM-92 GRIB edition 1 and edition 2
- WMO FM-94 BUFR edition 3 and edition 4
- WMO GTS abbreviated header (only decoding).

A useful set of command line tools provide quick access to the messages. C,
Fortran 90 and Python interfaces provide access to the main ecCodes
functionality.

ecCodes is an evolution of GRIB-API. It is designed to provide the user with a
simple set of functions to access data from several formats with a key/value
approach.

For GRIB encoding and decoding, the GRIB-API functionality is provided fully in
ecCodes with only minor interface and behaviour changes. Interfaces for C,
Fortran 90 and Python are all maintained as in GRIB-API. However, the GRIB-API
Fortran 77 interface is no longer available.

WWW: https://software.ecmwf.int/wiki/display/ECC

Add py-kinematics 0.0.7

kinematics is Python package to perform attitude kinematics. It is written
completely in Python and only requires numpy as a runtime dependency.

WWW: https://github.com/skulumani/kinematics

New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module
with only pyFFTW support

science/Makefile: Fix sortedness

New port: science/py-PyQuante: Quantum chemistry in Python

New port: science/dft_tools: Interface to DFT codes in TRIQS

New port: science/triqs: Toolbox for Research on Interacting Quantum Systems

New port: science/py-abipy: Library for analyzing the results produced by ABINIT

New port: science/py-pymatgen: Python Materials Genomics is a robust materials
analysis code

New port: science/py-spglib: Library for finding and handling crystal symmetries

New port: science/spglib: C library for finding and handling crystal symmetries

New port: science/atompaw: Tool for projector augmented wave functions for
molecular simulations

Number of commits found: 441 (showing only 100 on this page)

1 | 2 | 3 | 4 | 5  »  

9 vulnerabilities affecting 54 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities

Last updated:
2019-01-20 01:05:52