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Ukraine
FreshPorts needs to find a new hosting provide willing to take a 2U chassis and host it free of charge. This is part of the FreshPorts project. Preferably in the Austin area. This is not a primary server, but it used for development.
non port: science/Makefile
SVNWeb

Number of commits found: 623 (showing only 100 on this page)

1 | 2 | 3 | 4 | 5 | 6 | 7  »  

Sun, 24 Jul 2022
[ 06:57 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:2a165c431a7f3788eed7925824c018a64081a6ec  2a165c4 
science/meep: Re-add port: Finite-difference time-domain software for
electromagnetic simulations
Mon, 18 Jul 2022
[ 12:50 Po-Chuan Hsieh (sunpoet) search for other commits by this committer ]    commit hash:1bc7803607e7e0a8cac9c011a3684859d3ab2953  1bc7803 
science/hdf5-110: Add hd5-110 1.10.9 (copied from hdf5)

- Add PKGNAMESUFFIX
- Install files with suffix:
  - Install binary executables with -110 suffix
  - Install include files to hdf5-110 sub-directory
  - Install examples to EXAMPLESDIR with -110 suffix
- Add PORTSCOUT

PR:		265152
Exp-run by:	antoine
Sun, 17 Jul 2022
[ 06:28 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:4a9dc80423516032797f52d313a786892395f251  4a9dc80 
science/kplib: New port: Library for finding optimal Generalized Monkhorst-Pack
k-points grid
[ 06:28 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:f3cca0975cd1ad2b1c64a5ccc53ea0558f3d7e36  f3cca09 
science/py-kpLib: New port: Library for finding optimal Generalized
Monkhorst-Pack k-points grid
Wed, 13 Jul 2022
[ 07:19 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:fa189d59dc26c05bdbbe0c045bed8dec6b8560ff  fa189d5  (Only the first 10 of 17 ports in this commit are shown above. View all ports for this commit)
devel/ChipmunkPhysics: Move to science/ChipmunkPhysics
Fri, 8 Jul 2022
[ 16:30 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:ee1edf9674bbf9af4de1db836c165197de9cc941  ee1edf9 
science/trilinos: New port: Solver for multi-physics engineering and scientific
problems
Sat, 2 Jul 2022
[ 01:55 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:670b8e4d0a82b0b7435057a381dbb7d1904f1f94  670b8e4 
science/py-cirq-rigetti: New port: Cirq module to run on Rigetti quantum
computers
Mon, 27 Jun 2022
[ 17:58 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:e5b105c24e65d7f8cffbcae80ea988394129730b  e5b105c 
science/libgetar: New port: Library to read and write GEneric Trajectory
ARchives
[ 17:58 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:f0fd4669b8f96637de50848d8540ff6d623b5453  f0fd466 
science/py-libgetar: New port: Library to read and write GEneric Trajectory
ARchives
Mon, 20 Jun 2022
[ 16:53 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:2281a1c1659e265a1454f26efc91e61815d3a121  2281a1c 
science/py-pyprecice: New port: Coupling library for partitioned multi-physics
simulations
[ 16:53 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:672f96db60a1557abf034ceba9b7636195da5770  672f96d 
science/precice: New port: Coupling library for partitioned multi-physics
simulations
Sun, 19 Jun 2022
[ 10:01 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:30c83a16357160df2b8eaacf28d3b6ad5c965eb9  30c83a1 
science/py-asap3: New port: Classical potentials for MD with ASE
[ 07:52 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:db283c306304a61abbea65249f40fb06c1393232  db283c3  (Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
biology/mopac: Move to science/mopac; Add TIMESTAMP to distinfo; Take
maintainership
Thu, 16 Jun 2022
[ 15:13 Po-Chuan Hsieh (sunpoet) search for other commits by this committer ]    commit hash:3110404349b2df7a416cef5e76af82f9e888c0db  3110404 
science/szip: Remove obsoleted port

Use science/libaec instead.
Wed, 15 Jun 2022
[ 20:56 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:19cdfb04af1e477b84138ad1c2058aeaa25a72ca  19cdfb0 
science/py-py3Dmol: New port: IPython interface for embedding 3Dmol.js views
Fri, 10 Jun 2022
[ 19:04 Chris Rees (crees) search for other commits by this committer Author: Paul Armstrong ]    commit hash:67d31a51c68c5dd076bf87ceabfbfa6c5bc1374f  67d31a5 
science/libtensorflow1: Add new port

C API for TensorFlow, an open source platform for machine learning

TensorFlow is an end-to-end open source platform for machine learning.
It has a comprehensive, flexible ecosystem of tools, libraries, and
community resources that lets researchers push the state-of-the-art in
ML and developers easily build and deploy ML-powered applications.
The TensorFlow C API is typically a requirement of TensorFlow APIs in
other languages such as Go and Rust.

This is version 1 of the API, which is deprecated but still widely used.

PR:		ports/260694
Improved by:	delphij
Wed, 1 Jun 2022
[ 03:42 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:c3917216ac23dc4f5886eb8f8ee5c408281cb400  c391721 
science/py-thewalrus: New port: Open source library for hafnian calculation
Tue, 31 May 2022
[ 20:02 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:522ac45a6940a2ca9717e78280d165df056b20fb  522ac45 
science/quantum-jet: New port: Cross-platform header-only library for simulating
quantum circuits
Thu, 26 May 2022
[ 20:04 Thierry Thomas (thierry) search for other commits by this committer ]    commit hash:d976ae7a5d3940906595c30b9745600bec27c0ec  d976ae7  (Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
science/paraview: resurrect

It has been removed in r548980 because it used a deprecated version of
Python, but this is fixed now.
Wed, 25 May 2022
[ 02:06 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:f4b77872080c762ffc3105a441145a6e0c94dcb7  f4b7787 
science/ukrmol+: New port: Code to compute electron and positron scattering from
molecules
[ 00:02 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:b9c18e8d11185549dd7cbe896ba503176d33c11b  b9c18e8 
science/gbtolib: New port: High-performance library for evaluation of molecular
integrals
Tue, 24 May 2022
[ 19:51 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:3079ad1eeb3730a0967ebcc19aa81f56d6e3e90b  3079ad1 
science/openmolcas: New port: Quantum chemistry software package

OpenMolcas has issues: it doesn't respect UNIX file path
conventions, it expects the installation directory to be writable.

Currently it needs to be either run as root, or after chown,
or after copying the entire tree to the home directory.

Hopefully they will resolve these issues.
[ 01:54 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:861dc058cbf22c8ed2bd0b69bb8492428b6566ad  861dc05 
science/q: New port: Molecular Dynamics (MD) tools
Fri, 6 May 2022
[ 15:32 Thierry Thomas (thierry) search for other commits by this committer ]    commit hash:b9186746e723c3c086d784ff82ebc4f99d932f19  b9186746 
science/R-cran-ks: adding a R library for Kernel Smoothing
Sat, 23 Apr 2022
[ 16:41 Thierry Thomas (thierry) search for other commits by this committer ]    commit hash:09d882192d28914c254493309c1224c09c94b67b  09d8821 
science/pastix: adding PaStiX, a sparse direct solver

Requested by:	pfg
Tue, 15 Mar 2022
[ 12:41 Mikael Urankar (mikael) search for other commits by this committer ]    commit hash:ed17235fe263ff6f34ba378ee2f367715b7baf2b  ed17235 
science/zotero: Add new port

Zotero is a reference management software to manage bibliographic data and
related research materials.

WWW: https://www.zotero.org/
Mon, 7 Mar 2022
[ 20:14 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:4d180554716acbea77c23467e92a08b4e97ff39c  4d18055 
science/py-trainstation: New port: Convenient training of linear models
[ 18:10 Po-Chuan Hsieh (sunpoet) search for other commits by this committer ]    commit hash:5d805bddeaf471555cab2cba50da157975f1e05d  5d805bd 
science/py-asdf-standard: Add py-asdf-standard 1.0.1

ASDF standard

This document describes the Advanced Scientific Data Format (ASDF), pronounced
AZ-diff.

WWW: https://github.com/asdf-format/asdf-standard
[ 18:10 Po-Chuan Hsieh (sunpoet) search for other commits by this committer ]    commit hash:f6656e1d8323b17d1fe3bfd49b9d0d872d343cdc  f6656e1 
science/py-asdf-transform-schemas: Add py-asdf-transform-schemas 0.2.2

This package provides ASDF schemas for validating transform tags. Users should
not need to install this directly; instead, install an implementation package
such as asdf-astropy, which includes asdf-transform-schemas as a dependency.

WWW: https://github.com/asdf-format/asdf-transform-schemas
Fri, 28 Jan 2022
[ 23:26 Po-Chuan Hsieh (sunpoet) search for other commits by this committer ]    commit hash:c6f3b6e936d2e6d12a26d0bc70773b05ae22a4cf  c6f3b6e 
science/py-sklearn-pandas: Add py-sklearn-pandas 2.2.0

This module provides a bridge between Scikit-Learn's machine learning methods
and pandas-style Data Frames. In particular, it provides a way to map DataFrame
columns to transformations, which are later recombined into features.

WWW: https://github.com/scikit-learn-contrib/sklearn-pandas
Mon, 24 Jan 2022
[ 17:13 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:3054f22f929ef70c69904de17be9a681c8f8fa14  3054f22 
science/py-fresnel: New port: Publication quality path tracing in real time
Fri, 21 Jan 2022
[ 10:00 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:ccfa03aa862d1dd374bab6fd3d577e4826fbd8e5  ccfa03a 
science/py-hoomd-blue: New port: Molecular dynamics and Monte Carlo soft matter
simulation
Wed, 19 Jan 2022
[ 07:05 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:090ecb7bea2104bb38aa25a1dd63ffca44e3466b  090ecb7 
science/chimes-calculator: New port: Chebyshev Interaction Model for Efficient
Simulation
Tue, 18 Jan 2022
[ 18:42 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:499a8f4525f35eb8ecbc02accb45f97d418fd15c  499a8f4 
science/chemicalfun: New port: C++ library for working with chemical reactions
and formulas
[ 02:42 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:8c3413a9f78f04d026de2a4901930fd4e891b311  8c3413a 
science/simple-dftd3: New port: Reimplementation of the DFT-D3 program
[ 02:42 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:a6c7c855dff7d31f15b6b95449a04905af309fcf  a6c7c85 
science/tblite: New port: Light-weight tight-binding framework
Mon, 17 Jan 2022
[ 05:15 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:b0b0f2af9878f8a734c23641447e9f8a9e99e1fb  b0b0f2a 
science/libnegf: New port: Non Equilibrium Green's Functions library
[ 05:15 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:9d5d7aa9abae6afb23eda71de6bdc6e8aa3dfe43  9d5d7aa 
science/libmbd: New port: Many-body dispersion library
Wed, 5 Jan 2022
[ 09:40 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:9ff296b7c547ab41f0934830d13d0c174ee2701b  9ff296b 
science/fleur: Re-add port: FLAPW code for atomic computations in quantum
chemistry and physics
Tue, 4 Jan 2022
[ 20:26 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:912aa553ca9bc33bb5597f77c5067a14c10d41e2  912aa55 
science/multicharge: New port: Electronegativity equilibration model for atomic
partial charges
[ 20:23 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:646aaca321c3eea493a66ccdc539ed76a1cd46b8  646aaca 
science/dftd4: New port: Atomic-charge dependent london dispersion correction
computation
[ 19:54 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:299c87d8826d47e4967f7041687a1a09a70b8e11  299c87d 
science/mstore: New port: Molecular structure store for testing
[ 19:36 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:d40ba16676ecd40fd3b0e5f13a5fe2d7484b0b57  d40ba16 
science/mctc-lib: New port: Computation tool chain library to work with
molecular structure data
Wed, 3 Nov 2021
[ 16:20 Mateusz Piotrowski (0mp) search for other commits by this committer ]    commit hash:8c6cd1e9189cdfa6918c020fb0c1fb87fa3c03ee  8c6cd1e 
science/linux-zotero: Add new port

Zotero is a reference management software to manage bibliographic data and
related research materials.

WWW: https://www.zotero.org/

MFH:		2021Q4
Mon, 25 Oct 2021
[ 15:57 Po-Chuan Hsieh (sunpoet) search for other commits by this committer ]    commit hash:70b81836d936aa2ade6db83a23f5500b339a4da2  70b8183 
*/Makefile: Sort SUBDIRs
Sat, 16 Oct 2021
[ 23:56 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:b57cde219d58fc7e96b13f8baa3ffa9860e1c26c  b57cde2 
science/py-pyberny: New port: Optimizer of molecular geometries with respect to
the total energy
Mon, 11 Oct 2021
[ 15:51 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:2944d20f6bb513a39d5990364d7ae9f5ceee5704  2944d20 
science/py-OpenMC: New port: Monte Carlo neutron and photon transport simulation
code (Python)
[ 03:56 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:eb26b25084ca81ec7a3df633d635337b881cf7a0  eb26b25 
science/openmc: New port: Monte Carlo neutron and photon transport simulation
code
Sun, 10 Oct 2021
[ 05:21 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:7c0a02b1bf8eed6ccf4a0543fb6eb5c4b18eb424  7c0a02b 
science/py-PyNE: New port: PyNE: The Nuclear Engineering Toolkit
Thu, 16 Sep 2021
[ 16:46 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:91e83b602bda9ae19170597966f7d0d977f80f72  91e83b6 
science/ascent: New port: Visualization and analysis runtime for multi-physics
HPC simulations
Sat, 11 Sep 2021
[ 09:24 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:94d91d836101c1736238f4341b4f7a107d1f70c8  94d91d8 
science/helfem: New port: Finite element methods for electronic structure
calculations
[ 07:13 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:dfc0238640429f5d381a17d2d1196f9f9461312e  dfc0238 
science/py-pyked: New port: Package for manipulating Chemical Kinetics
Experimental Data files
Fri, 10 Sep 2021
[ 18:50 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:af1b8fdf83929fcf6acf149bcdb9b81a59cd5981  af1b8fd 
science/cantera: New port: Chemical kinetics, thermodynamics, and transport tool
suite
Thu, 19 Aug 2021
[ 01:25 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:f389fab6ac093bcaa49cb63afad7070daabff208  f389fab 
science/openems: New port: Electromagnetic field solver using the EC-FDTD method
Sun, 15 Aug 2021
[ 07:33 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:54e006aa76169cc6e9be20cdcfa233e8e376d824  54e006a  (Only the first 10 of 16 ports in this commit are shown above. View all ports for this commit)
science/openmx: Re-add port: Nanoscale material simulations using density
functional theories (DFT)

It isn't unfetchable.
Sat, 14 Aug 2021
[ 08:56 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:5f4d541a6700b08d891d5ded5246d2e3d7fa3ed4  5f4d541 
science/dynare: Re-add port: Software platform for handling a wide class of
economic models
Wed, 11 Aug 2021
[ 22:51 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:32704007db36c1dadf6e562219272f167a12e4ae  3270400 
science/siconos: New port: Simulation framework for nonsmooth dynamical systems
Mon, 9 Aug 2021
[ 08:26 Guangyuan Yang (ygy) search for other commits by this committer Author: Frank Scholl ]    commit hash:27ff93b979893807537870b43d7c376e531d5a0a  27ff93b 
science/orthanc-dicomweb: Revive port

Plugin to bring support of the DICOMweb standard into Orthanc.

PR:		242547
Reviewed by:	lwhsu
Sat, 7 Aug 2021
[ 21:40 Guangyuan Yang (ygy) search for other commits by this committer Author: Frank Scholl ]    commit hash:b660b9f923286590d1bfb59406f3c263f8f9620d  b660b9f 
science/orthanc-postgresql: Revive port

Orthanc plugin to use PostgreSQL for indexing or storage.

PR:		242548
[ 21:26 Guangyuan Yang (ygy) search for other commits by this committer Author: Frank Scholl ]    commit hash:fd66760b1bf6a428787ca9a98ff9567d22d5dd51  fd66760 
science/orthanc-mysql: New port

Orthanc plugin to use MySQL/MariaDB for indexing or storage.

PR:		242552
Fri, 6 Aug 2021
[ 13:31 Guangyuan Yang (ygy) search for other commits by this committer Author: Frank Scholl ]    commit hash:0b34ae623a58b1975b3e2f009f95239e3e950695  0b34ae6 
science/orthanc-webviewer: Revive port

Plugin to extend Orthanc with a Web viewer of medical images.

PR:		242549
Thu, 5 Aug 2021
[ 16:51 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:3401e541d6c4566e5549aa25c1cadbad9b9cfd25  3401e54 
science/phonopy: New port: Package for phonon calculations at harmonic and
quasi-harmonic levels
[ 16:51 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:16c1136158631c2187f50243cd72a7d196975bf0  16c1136 
science/py-hiphive: New port: High-order force constants for the masses
Wed, 28 Jul 2021
[ 17:13 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:f792513defb00a4066d4c0705ca17576e20584d6  f792513  (Only the first 10 of 13 ports in this commit are shown above. View all ports for this commit)
science/py-cirq-{aqt,ionq,pasqal}: New ports: Modules for the Cirq quantum
computing framework
Tue, 27 Jul 2021
[ 13:16 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:e74986e25e061eb40be766759d89e545bab74089  e74986e 
science/py-PubChemPy: New port: Simple Python wrapper around the PubChem PUG
REST API
Mon, 26 Jul 2021
[ 22:36 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:e1f12f98d320c589b57a40436d627796945065bb  e1f12f9 
science/py-{core,google}: New ports: Writing, manipulating, and optimizing
quantum circuits and running them against quantum computers and simulators
Fri, 18 Jun 2021
[ 21:28 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:98807e08be7e890aaaea5710823a192ca318658b  98807e0 
science/csvtk: Cross-platform and ultrafast toolkit for CSV/TSV processing

CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics
and data science.

People usually use spreadsheet software like MS Excel to process table data.
However this is all by clicking and typing, which is not automated and is
time-consuming to repeat, especially when you want to apply similar operations
with different datasets or purposes.

csvtk is convenient for rapid data investigation and also easy to integrate
into analysis pipelines. It could save you lots of time in (not) writing
Python/R scripts.
Tue, 8 Jun 2021
[ 18:20 Guangyuan Yang (ygy) search for other commits by this committer ]    commit hash:e7091bee9b00f24849eebc839de53095a1595911  e7091be 
science/orthanc: Hook to the build

PR:		242546
Fixes:		d0359493ee0443e596be74b336ea12e6db936a01
Approved by:	lwhsu (mentor, implicit), portmgr (fix build)
Sat, 5 Jun 2021
[ 20:01 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:05a1e2cb1bbf02a3d25e465f53a6b27794e70630  05a1e2c 
science/xcfun: New port: Exchange-correlation functionals with arbitrary-order
derivatives
[ 20:01 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:f97053f992b81383ebc013323ad148dfbce7b6dd  f97053f 
science/py-pyscf: New port: Python module for quantum chemistry
Mon, 26 Apr 2021
[ 10:17 Thierry Thomas (thierry) search for other commits by this committer ]    commit hash:fc6c79393bc7d87ea5ee6181e504a9c0b37964f8  fc6c793 
science/frontistr adding FrontISTR

This is an Open-Source Large-Scale Parallel FEM Program for Nonlinear
Structural Analysis.
Sun, 25 Apr 2021
[ 20:35 Po-Chuan Hsieh (sunpoet) search for other commits by this committer ]    commit hash:a15ff33a682545cfdd76f7c545d7da95b462d271  a15ff33 
science/py-skrebate: Add py-skrebate 0.62

This package includes a scikit-learn-compatible Python implementation of ReBATE,
a suite of Relief-based feature selection algorithms for Machine Learning. These
Relief-Based algorithms (RBAs) are designed for feature weighting/selection as
part of a machine learning pipeline (supervised learning). Presently this
includes the following core RBAs: ReliefF, SURF, SURF*, MultiSURF*, and
MultiSURF. Additionally, an implementation of the iterative TuRF mechanism and
VLSRelief is included.

WWW: https://github.com/EpistasisLab/scikit-rebate
Wed, 7 Apr 2021
[ 08:09 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc  (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Wed, 24 Feb 2021
[ 07:39 yuri search for other commits by this committer ] Original commit   Revision:566452
New port: science/libecpint: Library for the evaluation of integrals over
effective core potentials
Sat, 20 Feb 2021
[ 00:44 yuri search for other commits by this committer ] Original commit   Revision:566127 (Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
New port: science/dakota: Interface between analysis codes & iterative systems
analysis methods
Sat, 6 Feb 2021
[ 20:42 sunpoet search for other commits by this committer ] Original commit   Revision:564245
Sort SUBDIRs
Tue, 2 Feb 2021
[ 00:48 yuri search for other commits by this committer ] Original commit   Revision:563780
New port: science/thermofun: Code for calculating thermodynamic properties of
materials
Mon, 1 Feb 2021
[ 12:52 rene search for other commits by this committer ] Original commit   Revision:563574 (Only the first 10 of 19 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

2021-01-31 deskutils/orage: Unsupported upstream, cannot work with XFCE 4.16
2021-01-31 sysutils/rubygem-chef-config12
2021-01-31 mail/openwebmail: Does not use modern Perl syntax and no development
activity since 2006
2021-01-31 sysutils/rubygem-ohai8
2021-01-31 deskutils/xfce4-volumed: Unsupported upstream, cannot work with XFCE
4.16
2021-01-31 sysutils/rubygem-chef12: Please use sysutils/rubygem-chef instead
2021-01-31 x11/xfce4-embed-plugin: Unsupported upstream, cannot work with XFCE
4.16
2021-01-31 net-p2p/py-transmissionrpc: Unmaintained and dead upstream, use
net-p2p/py-transmission-rpc instead
2021-01-31 science/xfce4-equake-plugin: Unsupported upstream, cannot work with
XFCE 4.16
2021-01-31 sysutils/xfce4-kbdleds-plugin: Unsupported upstream, cannot work with
XFCE 4.16
2021-01-31 textproc/py-gfm: No longer maintained by upstream, please use
textproc/py-cmarkgfm instead
Thu, 21 Jan 2021
[ 03:53 yuri search for other commits by this committer ] Original commit   Revision:562173
New port: science/py-nilearn: Statistical learning for neuroimaging in Python
[ 03:21 yuri search for other commits by this committer ] Original commit   Revision:562172
New port: science/py-dipy: Python toolbox for analysis of MR diffusion imaging
[ 02:07 yuri search for other commits by this committer ] Original commit   Revision:562166
New port: science/py-nibabel: Read/write some common neuroimaging file formats
Sun, 17 Jan 2021
[ 12:10 rene search for other commits by this committer ] Original commit   Revision:561814
Remove expired ports:

2021-01-14 net-im/telegram: Upstream unmaintained; please migrate to
net-im/telegram-cli
2021-01-14 science/dlpoly-classic: MASTERSITE gone; possibly replaced by
https://gitlab.com/DL_POLY_Classic/dl_poly?
2021-01-15 security/py-gtts-token: Obsolete, please use audio/py-gtts instead
Thu, 14 Jan 2021
[ 19:14 yuri search for other commits by this committer ] Original commit   Revision:561586
New port: science/shelxle: Graphical user interface for small-molecule structure
refinement
Sun, 3 Jan 2021
[ 19:58 sunpoet search for other commits by this committer ] Original commit   Revision:560056
Add py-tobler 0.5.4

tobler is a library for areal interpolation and dasymetric mapping. The name is
an homage to the legendary geographer Waldo Tobler.

WWW: https://pysal.org/tobler/
WWW: https://github.com/pysal/tobler
[ 19:58 sunpoet search for other commits by this committer ] Original commit   Revision:560055
Add py-spaghetti 1.4.2

SPAtial GrapHs: nETworks, Topology, & Inference

Spaghetti is an open-source Python library for the analysis of network-based
spatial data. Originating from the network module in PySAL (Python Spatial
Analysis Library), it is under active development for the inclusion of newly
proposed methods for building graph-theoretic networks and the analysis of
network events.

WWW: https://pysal.org/spaghetti/
WWW: https://github.com/pysal/spaghetti
[ 19:58 sunpoet search for other commits by this committer ] Original commit   Revision:560054
Add py-segregation 1.4.0

Segregation Analysis, Inference, and Decomposition with PySAL

The PySAL segregation package is a tool for analyzing patterns of urban
segregation. With only a few lines of code, segregation users can calculate over
40 segregation measures from simple to state-of-the art.

WWW: https://pysal.org/segregation/
WWW: https://github.com/pysal/segregation
[ 19:58 sunpoet search for other commits by this committer ] Original commit   Revision:560053
Add py-libpysal 4.3.0

Python Spatial Analysis Library Core

libpysal offers four modules that form the building blocks in many upstream
packages in the PySAL family:
- Spatial Weights: libpysal.weights
- Input-and output: libpysal.io
- Computational geometry: libpysal.cg
- Built-in example datasets libpysal.examples

WWW: https://pysal.org/libpysal/
WWW: https://github.com/pysal/libpysal
[ 19:58 sunpoet search for other commits by this committer ] Original commit   Revision:560052
Add py-inequality 1.0.0

inequality implements measures for the analysis of inequality over space and
time and is part of the PySAL family.

WWW: https://inequality.readthedocs.io/en/latest/
WWW: https://github.com/pysal/inequality
[ 19:57 sunpoet search for other commits by this committer ] Original commit   Revision:560051
Add py-esda 2.3.1

ESDA: Exploratory Spatial Data Analysis

ESDA is an open-source Python library for the exploratory analysis of spatial
data. A subpackage of PySAL (Python Spatial Analysis Library), it is under
active development and includes methods for global and local spatial
autocorrelation analysis.

WWW: https://pysal.org/esda/
WWW: https://github.com/pysal/esda
[ 19:57 sunpoet search for other commits by this committer ] Original commit   Revision:560050
Add py-access 1.1.3

Spatial Access for PySAL

Whether you work with data in health, retail, employment or other domains,
spatial accessibility measures help identify potential spatial mismatches
between the supply and demand of services. They indicate how close demand
locations are to supply locations.

WWW: https://access.readthedocs.io/en/latest/
WWW: https://github.com/pysal/access
Thu, 31 Dec 2020
[ 15:07 rene search for other commits by this committer ] Original commit   Revision:559743 (Only the first 10 of 30 ports in this commit are shown above. View all ports for this commit)
Remove expired ports not depending on Python 2.7:

2020-12-31 devel/arm-none-eabi-gdb: This is an old, obsolete version of gdb
2020-12-31 devel/pecl-weakref2: PHP 7.2 extension
2020-12-31 graphics/py-imageio24: Use graphics/py-imageio instead
2020-12-31 mail/bogofilter-tc: TokyoCabinet is being phased out in favor of
KyotoCabinet.
2020-12-31 net/pecl-yaz: PHP 7.2 extension
2020-12-31 print/cloudprint: Google Cloud Print is being shut down by Google by
end of 2020
2020-12-31 science/py-eccodes-python: Use science/py-eccodes instead
2020-12-31 sysutils/cfengine-masterfiles312: EOL
2020-12-31 sysutils/cfengine-masterfiles313: EOL
2020-12-31 sysutils/cfengine312: EOL
2020-12-31 sysutils/cfengine313: EOL
2020-12-31 sysutils/rubygem-chef-zero5: Please use sysutils/rubygem-chef-zero
instead
2020-12-31 sysutils/syslog-ng325: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng326: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng328: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng329: Reduction of syslog-ng ports to one
2020-12-31 www/flashplayer: Depends on a deprecated port
2020-12-31 www/linux-flashplayer: Deprecated by upstream
2020-12-31 www/mediawiki133: Upstream end of life
2020-12-31 www/mediawiki134: Upstream end of life
2020-12-31 www/py-aiohttp2: Use www/py-aiohttp instead

sysutils/drm-legacy-kmod is left in for now.
Tue, 22 Dec 2020
[ 11:48 thierry search for other commits by this committer ] Original commit   Revision:558904
Adding jupyter-jsmol, a JSmol viewer widget for Jupyter Notebooks and
JupyterLab, to bue used by SageMath 9.3.
Sat, 19 Dec 2020
[ 20:04 sunpoet search for other commits by this committer ] Original commit   Revision:558476
Add py-eccodes 1.0.0 (copied from py-eccodes-python)

Changes:	https://github.com/ecmwf/eccodes-python/blob/develop/CHANGELOG.rst
Thu, 10 Dec 2020
[ 21:28 sunpoet search for other commits by this committer ] Original commit   Revision:557468
Add py-netcdf-flattener 1.2.0

The flattener takes as input and output NetCDF Dataset objects, which the user
can create or open from ".nc" files using the netCDF4 API.

WWW: https://gitlab.eumetsat.int/open-source/netcdf-flattener
Tue, 1 Dec 2020
[ 20:09 rene search for other commits by this committer ] Original commit   Revision:556791 (Only the first 10 of 25 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

2020-11-30 databases/datamodeler: depends on expiring java/openjfx8-devel
2020-11-30 devel/gradle4: only needed for expiring biology/igv and
java/openjfx8-devel
2020-11-30 devel/py-astroid1: Use devel/py-astroid instead
2020-11-30 devel/pylint1: Use devel/pylint instead
2020-11-30 german/mediathekview: depends on expiring java/openjfx8-devel
2020-11-30 java/openjfx8-devel: No longer maintained upstream
2020-11-30 java/openjfx8-scenebuilder: depends on expiring java/openjfx8-devel
2020-11-30 net-im/py-sleekxmpp: Upstream archived and advices to use
net-im/py-slixmpp
2020-12-01 net-mgmt/zabbix44-agent: End of Life
2020-12-01 net-mgmt/zabbix44-frontend: End of Life
2020-12-01 net-mgmt/zabbix44-java: End of Life
2020-12-01 net-mgmt/zabbix44-proxy: End of Life
2020-12-01 net-mgmt/zabbix44-server: End of Life
2020-11-30 print/jabref: depends on expiring java/openjfx8-devel
2020-11-30 science/datawarrior: depends on expiring java/openjfx8-devel
Thu, 26 Nov 2020
[ 20:46 thierry search for other commits by this committer ] Original commit   Revision:556349 (Only the first 10 of 21 ports in this commit are shown above. View all ports for this commit)
Upgrade Code_Aster to 14.6.0-1.

This implies:

- french /aster builds fine with clang, but it seg-faults: switched to Gcc

- ASTK is upgraded to 2019.0-1

- math/mumps is upgraded to 5.1.2-aster7

- TFEL/MFront is now required, but when the compilers of tfel and aster are
  different, it cannot be linked
  . recopopy science/tfel to science/tfel-edf and depends on science/tfel-edf
  . science/tfel-edf is built by Gcc, from the sources included in Aster's
    tarball
  . register the conflicts
Sun, 8 Nov 2020
[ 02:56 yuri search for other commits by this committer ] Original commit   Revision:554431
New port: science/py-segyio: Python binding for segyio, the seismic data library
[ 00:27 yuri search for other commits by this committer ] Original commit   Revision:554430
New port: science/segyio: Library to interact with SEG-Y & Seismic Unix
formatted seismic data
Fri, 9 Oct 2020
[ 03:42 yuri search for other commits by this committer ] Original commit   Revision:551739
New port: science/axom: Infrastructure for development of multi-physics
applications and tools

Number of commits found: 623 (showing only 100 on this page)

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