07:19 Yuri Victorovich (yuri) 

science/py-dwave-optimization: New port: DWave: Nonlinear models for industrial
optimization problems

    af92280

13:02 Thierry Thomas (thierry) 

science/Makefile: connect mmg

    dae95f9

12:58 Thierry Thomas (thierry) 

science/linearelasticity: new port, Elas, a solver for linear elasticity

Required by Mmg.

    298551c

10:54 Yuri Victorovich (yuri) 

science/py-mplhep-data: New port: Font (Data) sub-package for mplhep

    ca06520

10:54 Yuri Victorovich (yuri) 

science/py-mplhep: New port: Matplotlib styles for HEP

    788eadd

17:16 Yuri Victorovich (yuri) 

science/py-periodictable: New port: Extensible periodic table of the elements
pre-populated with data

    9b01d7f

19:28 Yuri Victorovich (yuri) 

science/py-HofstadterTools: New port: Package for analyzing the Hofstadter model
of particles in the lattice

    1fc3054

19:55 Rene Ladan (rene) 

science/svmlight: Remove expired port

2024-04-14 science/svmlight: Unmaintained, last upstream release in 2008 and
there are more modern alternatives

    1ec3fe7

19:54 Rene Ladan (rene) 

science/p5-Algorithm-SVMLight: Remove expired port

2024-04-14 science/p5-Algorithm-SVMLight: Depends on DEPRECATED science/svmlight

    287d278

18:37 Yuri Victorovich (yuri) 

science/py-h5pyd: New port: h5py compatible client lib for HDF REST API

    e06cdb8

13:47 Antoine Brodin (antoine) 

py-qiskit: remove and unbreak the ports tree

    30cfa1e

21:49 Yuri Victorovich (yuri) 

science/py-qiskit-terra: Removed until ported again

The upstream gutted the previous project and replaced it with an
unrelated repository under the same name.
The new project should be ported as new.
It was failing for a while in poudriere.

    b601591

14:44 Rene Ladan (rene) 

science/py-asdf-unit-schemas: Remove expired port

2024-03-31 science/py-asdf-unit-schemas: This package is decommissioned and no
longer provides any ASDF schemas. The schemas provided by the package were
duplicates of the schemas provided by asdf-standard. Use
science/py-asdf-standard instead

    5a2db3a

16:37 Thierry Thomas (thierry) 

science/optench: new port, a virtual optical bench

    2558582

11:32 Rene Ladan (rene) 

science/libtensorflow1: Remove expired port

2024-01-15 science/libtensorflow1: Broken for more than a year

    36babc4

19:01 Yuri Victorovich (yuri) 

science/py-trx-python: New port: Experiments with new file format for
tractography

    f47c470

13:40 Rene Ladan (rene) 

science/libgeodecomp: Remove expired port

2023-11-30 science/libgeodecomp: BROKEN for more than an year

    f19cf1d

05:43 Yuri Victorovich (yuri) 

science/mcpl: New port: Monte Carlo Particle Lists library

    0db904a

22:05 Yuri Victorovich (yuri) 

science/py-ncrystal: New port: Library for thermal neutron transport in crystals
and other materials

    46b9279

03:56 Yuri Victorovich (yuri) 

science/ncrystal: New port: Library for thermal neutron transport in crystals
and other materials

    88fff07

06:33 Yuri Victorovich (yuri) 

science/mutationpp: New port: MUlticomponent Thermodynamic And Transport library
for IONized gases

    d093257

21:26 Jason E. Hale (jhale) 

science/qt6-quick3dphysics: New port

Qt Quick 3D Physics provides a high-level API for physics simulation. It
supports simulating interactive rigid bodies as well as static meshes and
non-colliding bodies used for detecting overlaps. Every simulated body
can have its own physical properties like mass, density and friction.

https://doc.qt.io/qt-6/qtquick3dphysics-index.html

    594a399

02:22 Muhammad Moinur Rahman (bofh) 

science/crf++: Remove expired port

2023-09-30 science/crf++: Last upstream activity was in 2015

    e58795c

18:49 Yuri Victorovich (yuri) 

science/gcp: New port: Geometrical Counter-Poise Correction

    7f1f24a

07:02 Yuri Victorovich (yuri) 

science/py-dftd4: New port: Python API of the DFT-D4 project

    6db35e2

09:43 Yuri Victorovich (yuri) 

science/py-nglview: New port: IPython widget to view molecular structures and
trajectories

    a275c86

09:30 Yuri Victorovich (yuri) 

science/salome-configuration: New port: Salome Project: Multi-physics
simulations: Configuration

    bdbeacf

09:30 Yuri Victorovich (yuri) 

science/salome-kernel: New port: Salome Project: Multi-physics simulations:
Kernel

    5411099

17:48 Yuri Victorovich (yuri) 

science/py-emmet-core: New port: Materials API Toolkit for the Materials Project

    3992794

17:48 Yuri Victorovich (yuri) 

science/py-mp-api: New port: API for server for the Materials Project

    cf910b4

05:49 Yuri Victorovich (yuri) 

science/py-mpcontribs-client: New port: Client library for MPContribs API on
contribs-api.materialsproject.org

    baef140

16:39 Yuri Victorovich (yuri) 

science/py-pymatgen-analysis-alloys: New port: PyMatgen add-on library with
classes useful for describing alloys

    7d7d929

20:30 Yuri Victorovich (yuri) 

science/py-dftbplus: New port: DFTB+: Package for performing fast atomistic
simulations

    602af4b

16:24 Yuri Victorovich (yuri) 

science/py-signac: New port: Manage large and heterogeneous data spaces on the
file system

    f207625

18:57 Rene Ladan (rene) 

cleanup: Remove expired ports related to cdcl:

2023-04-21 science/cdcl: Broken since 2021
2023-04-21 science/rubygem-ruby-dcl: requires deprecated science/cdcl

    04c7d1e

08:47 Yuri Victorovich (yuri) 

science/py-HepMC3: New port: Event record for High Energy Physics Monte Carlo
generators/simulation

    0e14eaf

23:00 Yuri Victorovich (yuri) 

science/py-qiskit-dynamics: New port: Qiskit ODE solver

    e052de5

15:12 Yuri Victorovich (yuri) 

science/InsightToolkit521: Retire if favor of science/InsightToolkit

    173807a

00:01 Muhammad Moinur Rahman (bofh) 

science/dcl: Remove expired port:

2023-03-21 science/dcl: Broken since 2021

    38c1f38

00:01 Muhammad Moinur Rahman (bofh) 

science/fisicalab: Remove expired port:

2023-03-21 science/fisicalab: Broken since 2021

    09654bc

15:47 Po-Chuan Hsieh (sunpoet) 

science/py-cfgrib: Add py-cfgrib 0.9.10.3

cfgrib provides a Python interface to map GRIB files to the Unidata's Common
Data Model v4 following the CF Conventions. The high level API is designed to
support a GRIB engine for xarray and it is inspired by netCDF4-python and
h5netcdf. Low level access and decoding is performed via the ECMWF ecCodes
library and the eccodes python package.

    5660adf

12:58 Po-Chuan Hsieh (sunpoet) 

science/py-asdf-unit-schemas: Add py-asdf-unit-schemas 0.1.0

asdf-unit-schemas provides ASDF schemas for validating unit tags. Users should
not need to install this directly; instead, install an implementation package
such as asdf-astropy, which includes asdf-unit-schemas as a dependency.

    3de7714

23:05 Yuri Victorovich (yuri) 

science/py-vedo: New port: Python module for scientific analysis and
visualization of 3D objects

    de6c547

03:24 Yuri Victorovich (yuri) 

science/py-ipygany: New port: 3-D scientific visualization in Jupyter Notebooks

    85d1c98

09:04 Po-Chuan Hsieh (sunpoet) 

science/p5-Geo-Coordinates-Transform: Add p5-Geo-Coordinates-Transform 0.10

There are several formats used to present geographic coordinates.

Geo::Coordinates::Transform converts a list of provided latitude and longitude
coordinates in any of the three formats above (mixed input is ok) and converts
to the desired format. Note that special characters or non-numerical characters
such as " will throw an warning and return NaN for that list item.

In addition, the input does not interpert N,S,W,E designators but expects
coordinates to be in positive or negative representation.

Format of the output can be controlled via input arguments in the constructor.
The arguments are expected to be in the form of a hash reference.

    a6a8beb

21:00 Yuri Victorovich (yuri) 

science/py-arch: New port: Autoregressive Conditional Heteroskedasticity (ARCH)
models

    cc2dc10

15:04 Thierry Thomas (thierry)  Author: Erik Jensen

science/geant4: adding Geant4, a TK for the simulation of the passage of
particles through matter

PR:		268300
Reported by:	erik (at) tenku.dk

    3f600a7

01:22 Yuri Victorovich (yuri) 

science/bout++-merging-filaments: New port: Simulation of reconnection during
merging of current filaments

    5d3cbf5

01:22 Yuri Victorovich (yuri) 

science/py-xbout: New port: Collect data from BOUT++ runs in python using xarray

    e39b702

11:31 Yuri Victorovich (yuri) 

science/py-boutdata: New port: Python package for collecting BOUT++ data

    5f09224

11:06 Yuri Victorovich (yuri) 

science/py-boututils: New port: Python package containing BOUT++ utils

    4f2941a

11:06 Yuri Victorovich (yuri) 

science/bout++: New port: Plasma fluid finite-difference simulation code

    50bbd0a

20:41 Yuri Victorovich (yuri) 

science/openmodelica: New port: Modelica-based modeling and simulation
environment

    a51acec

00:44 Yuri Victorovich (yuri) 

science/spheral: New port: Environment for hydrodynamical & gravitational
numerical simulations

    762ba39

09:51 Yuri Victorovich (yuri) 

science/m-aneos: New port: M-ANEOS: program for construction of thermodynamic
equations of state

    1a68a9e

11:11 Yuri Victorovich (yuri) 

science/dftd3: New port: S. Grimme's dispersion correction for DFT, Hartree-Fock
methods

    4924d81

11:11 Yuri Victorovich (yuri) 

science/py-optking: New port: Python version of the PSI4 geometry optimization
program by R.A. King

    b6381ec

12:04 Yuri Victorovich (yuri) 

science/mp2d: New port: Program for calculating the MP2D dispersion energy

    7a26105

09:47 Yuri Victorovich (yuri) 

science/polytope: New port: Library for generating Voronoi and Voronoi-like
tessellations

    27ca116

10:12 Yuri Victorovich (yuri) 

science/py-arbor: New port: Multi-compartment neural network simulation library

    8feba41

10:12 Yuri Victorovich (yuri) 

science/arbor: New port: Multi-compartment neural network simulation library

    2647f3e

11:04 Yuri Victorovich (yuri) 

science/libint2-psi4: New port: Evaluate the integrals in modern atomic and
molecular theory (psi4)

    aa9c528

11:04 Yuri Victorovich (yuri) 

science/psi4: New port: Open-source suite of ab initio quantum chemistry
programs

    c492d0d

12:37 Wen Heping (wen) 

science/p5-Geo-Calc: Add new port

Geo::Calc implements a variety of calculations for latitude/longitude points.

All these formulare are for calculations on the basis of a spherical earth
(ignoring ellipsoidal effects) which is accurate enough* for most purposes.

    26024f6

21:50 Yuri Victorovich (yuri) 

science/py-openbabel: New port: Chemical toolbox designed to speak the many
languages of chemical data

    8eb5a64

16:35 Thierry Thomas (thierry) 

science/py-sdf: add a simple SDF mesh generator

    68756d9

16:35 Thierry Thomas (thierry) 

science/py-meshio: add a program to handle I/O for mesh files

    57b0181

02:05 Yuri Victorovich (yuri) 

science/InsightToolkit521: New port: Fork of science/InsightToolkit

for graphics/elastix

    fa8a770

10:42 Yuri Victorovich (yuri) 

science/InsightToolkit: Update 5.0.1 -> 5.2.1

Also fork InsightToolkit to InsightToolkit501 for graphics/vv.

    4c3fb7e

07:33 Yuri Victorovich (yuri) 

graphics/sciplot: Move to science/sciplot

PR:		267692
Reported by:	Franco Fichtner <franco@opnsense.org>; philip@

    2763db8

03:06 Yuri Victorovich (yuri) 

science/py-mrchem: New port: MultiResolution Chemistry

    cd3d8ed

03:06 Yuri Victorovich (yuri) 

science/mrchem: New port: MultiResolution Chemistry

    297ec91

22:44 Yuri Victorovich (yuri) 

science/mrcpp: New port: MultiResolution Computation Program Package

    dc8b8c3

11:59 Thierry Thomas (thierry) 

science/py-earthpy: adding a tool to plot and manipulate spatial data in Python

    8a197ac

05:31 Yuri Victorovich (yuri) 

science/ttk: New port: Topology ToolKit: Topological data analysis and
visualization

    32231b9

16:22 Yuri Victorovich (yuri) 

science/zx: New port: MQT ZX: A library for working with ZX-diagrams

    9959a6a

16:22 Yuri Victorovich (yuri) 

science/dd_package: New port: MQT decision diagram package tailored to quantum
computing

    1040fd3

17:13 Yuri Victorovich (yuri) 

science/feff10: New port: Ab initio scattering calculations of X-ray absorption
fine structure

    8221bc4

16:11 Yuri Victorovich (yuri) 

science/ocean: New port: BSE code for core spectroscopy

    b242240

18:36 Yuri Victorovich (yuri) 

science/py-kimpy: New port: Python interface to the KIM-API

    7fa243e

04:06 Yuri Victorovich (yuri) 

science/py-atomium: New port: Molecular modeller and file parser

    c8a9968

02:40 Yuri Victorovich (yuri) 

science/dssp: New port: Application to assign secondary structure to proteins

    fdff0a7

02:40 Yuri Victorovich (yuri) 

science/libcifpp: New port: Library to manipulate mmCIF and PDB files

    16f9822

02:40 Yuri Victorovich (yuri) 

science/cif-tools: New port: Suite of programs to manipulate and examine mmCIF
files

    610c83b

01:35 Yuri Victorovich (yuri) 

science/{,py-}gemmi: New ports: Macromolecular crystallography library and
utilities

    8a36560

01:35 Yuri Victorovich (yuri) 

science/py-mmcif: New port: mmCIF Core Access Library

    742c1c0

21:43 Rene Ladan (rene) 

cleanup: Remove expired ports:

2022-09-12 science/R-cran-AMORE: Upstream no longer maintained

    3c9bb28

17:50 Alexander Nedotsukov (bland) 

science/mercantile: Add mercantile, a spherical mercator coordinate and tile
utilities

    32bbc9b

08:15 Yuri Victorovich (yuri) 

science/serac: New port: High order nonlinear thermomechanical simulation code

    565a8a4

02:35 Yuri Victorovich (yuri) 

science/dwave-preprocessing: New port: DWave: Preprocessing tools to aid in
solving binary quadratic models

    999d53d

04:52 Yuri Victorovich (yuri) 

science/dimod: New port: DWave: Shared API for QUBO/Ising samplers

    6ed61c3

04:25 Yuri Victorovich (yuri) 

science/sirius: New port: Domain specific library for electronic structure
calculations

    45cc1f7

00:11 Yuri Victorovich (yuri) 

science/nlcglib: New port: Nonlinear CG methods for wave-function optimization
in DFT

    6b4f2fe

20:32 Yuri Victorovich (yuri) 

science/cardioid: New port: Cardiac simulation toolkit

    0b9278e

22:16 Yuri Victorovich (yuri) 

science/py-qiskit-finance: New port: Quantum Finance module from the Qiskit
quantum computing framework

    a44d4da

02:58 Yuri Victorovich (yuri) 

science/py-dwave-hybrid: New port: DWave: Hybrid asynchronous decomposition
sampler prototype framework

    efafc68

02:58 Yuri Victorovich (yuri) 

science/py-dwave-ocean-sdk: New port: DWave: Meta-package for D-Wave's Ocean
tools

    0751869

23:48 Yuri Victorovich (yuri) 

science/py-dwavebinarycsp: New port: DWave: Map CSP with binary variables to
binary quadratic models

    ee99418

23:48 Yuri Victorovich (yuri) 

science/py-dwave-inspector: New port: DWave: Problem Inspector

    0943bfd

21:12 Yuri Victorovich (yuri) 

science/py-pyqubo: New port: DWave: Python DSL for constructing QUBOs from
mathematical expressions

    dcbef54