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Number of commits found: 557 (showing only 100 on this page)

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Fri, 18 Jun 2021
[ 21:28 jwb (Jason W. Bacon) ]    commit hash:98807e08be7e890aaaea5710823a192ca318658b  98807e0 
science/csvtk: Cross-platform and ultrafast toolkit for CSV/TSV processing

CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics
and data science.

People usually use spreadsheet software like MS Excel to process table data.
However this is all by clicking and typing, which is not automated and is
time-consuming to repeat, especially when you want to apply similar operations
with different datasets or purposes.

csvtk is convenient for rapid data investigation and also easy to integrate
into analysis pipelines. It could save you lots of time in (not) writing
Python/R scripts.
Tue, 8 Jun 2021
[ 18:20 ygy (Guangyuan Yang) ]    commit hash:e7091bee9b00f24849eebc839de53095a1595911  e7091be 
science/orthanc: Hook to the build

PR:		242546
Fixes:		d0359493ee0443e596be74b336ea12e6db936a01
Approved by:	lwhsu (mentor, implicit), portmgr (fix build)
Sat, 5 Jun 2021
[ 20:01 yuri (Yuri Victorovich) ]    commit hash:05a1e2cb1bbf02a3d25e465f53a6b27794e70630  05a1e2c 
science/xcfun: New port: Exchange-correlation functionals with arbitrary-order
derivatives
[ 20:01 yuri (Yuri Victorovich) ]    commit hash:f97053f992b81383ebc013323ad148dfbce7b6dd  f97053f 
science/py-pyscf: New port: Python module for quantum chemistry
Mon, 26 Apr 2021
[ 10:17 thierry (Thierry Thomas) ]    commit hash:fc6c79393bc7d87ea5ee6181e504a9c0b37964f8  fc6c793 
science/frontistr adding FrontISTR

This is an Open-Source Large-Scale Parallel FEM Program for Nonlinear
Structural Analysis.
Sun, 25 Apr 2021
[ 20:35 sunpoet (Po-Chuan Hsieh) ]    commit hash:a15ff33a682545cfdd76f7c545d7da95b462d271  a15ff33 
science/py-skrebate: Add py-skrebate 0.62

This package includes a scikit-learn-compatible Python implementation of ReBATE,
a suite of Relief-based feature selection algorithms for Machine Learning. These
Relief-Based algorithms (RBAs) are designed for feature weighting/selection as
part of a machine learning pipeline (supervised learning). Presently this
includes the following core RBAs: ReliefF, SURF, SURF*, MultiSURF*, and
MultiSURF. Additionally, an implementation of the iterative TuRF mechanism and
VLSRelief is included.

WWW: https://github.com/EpistasisLab/scikit-rebate
Wed, 7 Apr 2021
[ 08:09 mat (Mathieu Arnold) ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc  (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 mat (Mathieu Arnold) ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Wed, 24 Feb 2021
[ 07:39 yuri ] Original commit   Revision:566452
New port: science/libecpint: Library for the evaluation of integrals over
effective core potentials
Sat, 20 Feb 2021
[ 00:44 yuri ] Original commit   Revision:566127 (Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
New port: science/dakota: Interface between analysis codes & iterative systems
analysis methods
Sat, 6 Feb 2021
[ 20:42 sunpoet ] Original commit   Revision:564245
Sort SUBDIRs
Tue, 2 Feb 2021
[ 00:48 yuri ] Original commit   Revision:563780
New port: science/thermofun: Code for calculating thermodynamic properties of
materials
Mon, 1 Feb 2021
[ 12:52 rene ] Original commit   Revision:563574 (Only the first 10 of 19 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

2021-01-31 deskutils/orage: Unsupported upstream, cannot work with XFCE 4.16
2021-01-31 sysutils/rubygem-chef-config12
2021-01-31 mail/openwebmail: Does not use modern Perl syntax and no development
activity since 2006
2021-01-31 sysutils/rubygem-ohai8
2021-01-31 deskutils/xfce4-volumed: Unsupported upstream, cannot work with XFCE
4.16
2021-01-31 sysutils/rubygem-chef12: Please use sysutils/rubygem-chef instead
2021-01-31 x11/xfce4-embed-plugin: Unsupported upstream, cannot work with XFCE
4.16
2021-01-31 net-p2p/py-transmissionrpc: Unmaintained and dead upstream, use
net-p2p/py-transmission-rpc instead
2021-01-31 science/xfce4-equake-plugin: Unsupported upstream, cannot work with
XFCE 4.16
2021-01-31 sysutils/xfce4-kbdleds-plugin: Unsupported upstream, cannot work with
XFCE 4.16
2021-01-31 textproc/py-gfm: No longer maintained by upstream, please use
textproc/py-cmarkgfm instead
Thu, 21 Jan 2021
[ 03:53 yuri ] Original commit   Revision:562173
New port: science/py-nilearn: Statistical learning for neuroimaging in Python
[ 03:21 yuri ] Original commit   Revision:562172
New port: science/py-dipy: Python toolbox for analysis of MR diffusion imaging
[ 02:07 yuri ] Original commit   Revision:562166
New port: science/py-nibabel: Read/write some common neuroimaging file formats
Sun, 17 Jan 2021
[ 12:10 rene ] Original commit   Revision:561814
Remove expired ports:

2021-01-14 net-im/telegram: Upstream unmaintained; please migrate to
net-im/telegram-cli
2021-01-14 science/dlpoly-classic: MASTERSITE gone; possibly replaced by
https://gitlab.com/DL_POLY_Classic/dl_poly?
2021-01-15 security/py-gtts-token: Obsolete, please use audio/py-gtts instead
Thu, 14 Jan 2021
[ 19:14 yuri ] Original commit   Revision:561586
New port: science/shelxle: Graphical user interface for small-molecule structure
refinement
Sun, 3 Jan 2021
[ 19:58 sunpoet ] Original commit   Revision:560056
Add py-tobler 0.5.4

tobler is a library for areal interpolation and dasymetric mapping. The name is
an homage to the legendary geographer Waldo Tobler.

WWW: https://pysal.org/tobler/
WWW: https://github.com/pysal/tobler
[ 19:58 sunpoet ] Original commit   Revision:560055
Add py-spaghetti 1.4.2

SPAtial GrapHs: nETworks, Topology, & Inference

Spaghetti is an open-source Python library for the analysis of network-based
spatial data. Originating from the network module in PySAL (Python Spatial
Analysis Library), it is under active development for the inclusion of newly
proposed methods for building graph-theoretic networks and the analysis of
network events.

WWW: https://pysal.org/spaghetti/
WWW: https://github.com/pysal/spaghetti
[ 19:58 sunpoet ] Original commit   Revision:560054
Add py-segregation 1.4.0

Segregation Analysis, Inference, and Decomposition with PySAL

The PySAL segregation package is a tool for analyzing patterns of urban
segregation. With only a few lines of code, segregation users can calculate over
40 segregation measures from simple to state-of-the art.

WWW: https://pysal.org/segregation/
WWW: https://github.com/pysal/segregation
[ 19:58 sunpoet ] Original commit   Revision:560053
Add py-libpysal 4.3.0

Python Spatial Analysis Library Core

libpysal offers four modules that form the building blocks in many upstream
packages in the PySAL family:
- Spatial Weights: libpysal.weights
- Input-and output: libpysal.io
- Computational geometry: libpysal.cg
- Built-in example datasets libpysal.examples

WWW: https://pysal.org/libpysal/
WWW: https://github.com/pysal/libpysal
[ 19:58 sunpoet ] Original commit   Revision:560052
Add py-inequality 1.0.0

inequality implements measures for the analysis of inequality over space and
time and is part of the PySAL family.

WWW: https://inequality.readthedocs.io/en/latest/
WWW: https://github.com/pysal/inequality
[ 19:57 sunpoet ] Original commit   Revision:560051
Add py-esda 2.3.1

ESDA: Exploratory Spatial Data Analysis

ESDA is an open-source Python library for the exploratory analysis of spatial
data. A subpackage of PySAL (Python Spatial Analysis Library), it is under
active development and includes methods for global and local spatial
autocorrelation analysis.

WWW: https://pysal.org/esda/
WWW: https://github.com/pysal/esda
[ 19:57 sunpoet ] Original commit   Revision:560050
Add py-access 1.1.3

Spatial Access for PySAL

Whether you work with data in health, retail, employment or other domains,
spatial accessibility measures help identify potential spatial mismatches
between the supply and demand of services. They indicate how close demand
locations are to supply locations.

WWW: https://access.readthedocs.io/en/latest/
WWW: https://github.com/pysal/access
Thu, 31 Dec 2020
[ 15:07 rene ] Original commit   Revision:559743 (Only the first 10 of 30 ports in this commit are shown above. View all ports for this commit)
Remove expired ports not depending on Python 2.7:

2020-12-31 devel/arm-none-eabi-gdb: This is an old, obsolete version of gdb
2020-12-31 devel/pecl-weakref2: PHP 7.2 extension
2020-12-31 graphics/py-imageio24: Use graphics/py-imageio instead
2020-12-31 mail/bogofilter-tc: TokyoCabinet is being phased out in favor of
KyotoCabinet.
2020-12-31 net/pecl-yaz: PHP 7.2 extension
2020-12-31 print/cloudprint: Google Cloud Print is being shut down by Google by
end of 2020
2020-12-31 science/py-eccodes-python: Use science/py-eccodes instead
2020-12-31 sysutils/cfengine-masterfiles312: EOL
2020-12-31 sysutils/cfengine-masterfiles313: EOL
2020-12-31 sysutils/cfengine312: EOL
2020-12-31 sysutils/cfengine313: EOL
2020-12-31 sysutils/rubygem-chef-zero5: Please use sysutils/rubygem-chef-zero
instead
2020-12-31 sysutils/syslog-ng325: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng326: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng328: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng329: Reduction of syslog-ng ports to one
2020-12-31 www/flashplayer: Depends on a deprecated port
2020-12-31 www/linux-flashplayer: Deprecated by upstream
2020-12-31 www/mediawiki133: Upstream end of life
2020-12-31 www/mediawiki134: Upstream end of life
2020-12-31 www/py-aiohttp2: Use www/py-aiohttp instead

sysutils/drm-legacy-kmod is left in for now.
Tue, 22 Dec 2020
[ 11:48 thierry ] Original commit   Revision:558904
Adding jupyter-jsmol, a JSmol viewer widget for Jupyter Notebooks and
JupyterLab, to bue used by SageMath 9.3.
Sat, 19 Dec 2020
[ 20:04 sunpoet ] Original commit   Revision:558476
Add py-eccodes 1.0.0 (copied from py-eccodes-python)

Changes:	https://github.com/ecmwf/eccodes-python/blob/develop/CHANGELOG.rst
Thu, 10 Dec 2020
[ 21:28 sunpoet ] Original commit   Revision:557468
Add py-netcdf-flattener 1.2.0

The flattener takes as input and output NetCDF Dataset objects, which the user
can create or open from ".nc" files using the netCDF4 API.

WWW: https://gitlab.eumetsat.int/open-source/netcdf-flattener
Tue, 1 Dec 2020
[ 20:09 rene ] Original commit   Revision:556791 (Only the first 10 of 25 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

2020-11-30 databases/datamodeler: depends on expiring java/openjfx8-devel
2020-11-30 devel/gradle4: only needed for expiring biology/igv and
java/openjfx8-devel
2020-11-30 devel/py-astroid1: Use devel/py-astroid instead
2020-11-30 devel/pylint1: Use devel/pylint instead
2020-11-30 german/mediathekview: depends on expiring java/openjfx8-devel
2020-11-30 java/openjfx8-devel: No longer maintained upstream
2020-11-30 java/openjfx8-scenebuilder: depends on expiring java/openjfx8-devel
2020-11-30 net-im/py-sleekxmpp: Upstream archived and advices to use
net-im/py-slixmpp
2020-12-01 net-mgmt/zabbix44-agent: End of Life
2020-12-01 net-mgmt/zabbix44-frontend: End of Life
2020-12-01 net-mgmt/zabbix44-java: End of Life
2020-12-01 net-mgmt/zabbix44-proxy: End of Life
2020-12-01 net-mgmt/zabbix44-server: End of Life
2020-11-30 print/jabref: depends on expiring java/openjfx8-devel
2020-11-30 science/datawarrior: depends on expiring java/openjfx8-devel
Thu, 26 Nov 2020
[ 20:46 thierry ] Original commit   Revision:556349 (Only the first 10 of 21 ports in this commit are shown above. View all ports for this commit)
Upgrade Code_Aster to 14.6.0-1.

This implies:

- french /aster builds fine with clang, but it seg-faults: switched to Gcc

- ASTK is upgraded to 2019.0-1

- math/mumps is upgraded to 5.1.2-aster7

- TFEL/MFront is now required, but when the compilers of tfel and aster are
  different, it cannot be linked
  . recopopy science/tfel to science/tfel-edf and depends on science/tfel-edf
  . science/tfel-edf is built by Gcc, from the sources included in Aster's
    tarball
  . register the conflicts
Sun, 8 Nov 2020
[ 02:56 yuri ] Original commit   Revision:554431
New port: science/py-segyio: Python binding for segyio, the seismic data library
[ 00:27 yuri ] Original commit   Revision:554430
New port: science/segyio: Library to interact with SEG-Y & Seismic Unix
formatted seismic data
Fri, 9 Oct 2020
[ 03:42 yuri ] Original commit   Revision:551739
New port: science/axom: Infrastructure for development of multi-physics
applications and tools
Thu, 8 Oct 2020
[ 19:30 yuri ] Original commit   Revision:551731
New port: science/conduit: Simplified data exchange for HPC simulations
Sat, 19 Sep 2020
[ 13:01 rene ] Original commit   Revision:548980 (Only the first 10 of 199 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

2020-09-15 audio/abraca: Uses deprecated version of python
2020-09-15 audio/ardour5: Uses deprecated version of python
2020-09-15 audio/cplay: Uses deprecated version of python
2020-09-15 audio/cpp-xmms2: Uses deprecated version of python
2020-09-15 audio/p5-xmms2: Uses deprecated version of python
2020-09-15 biology/haplohseq: Uses deprecated version of python
2020-09-15 biology/tophat: Uses deprecated version of python
2020-09-15 chinese/ibus-array: Uses deprecated version of python
2020-09-15 comms/congruity: Uses deprecated version of python
2020-09-15 comms/libbtbb: Uses deprecated version of python
2020-09-15 comms/quisk: Uses deprecated version of python
2020-09-15 databases/mtools-mongodb: Uses deprecated version of python
2020-09-15 databases/mydbf2mysql: Uses deprecated version of python
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sun, 13 Sep 2020
[ 19:55 yuri ] Original commit   Revision:548571
New port: science/py-geometric: Geometry optimization for quantum chemistry
Thu, 27 Aug 2020
[ 11:25 rene ] Original commit   Revision:546333 (Only the first 10 of 44 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

2020-08-26 audio/timidity++-tcltk: Broken for more than 6 months
2020-08-26 biology/pbcopper: Broken for more than 6 months
2020-08-26 devel/ace: Broken for more than 6 months
2020-08-26 devel/bin86: Broken for more than 6 months
2020-08-26 devel/erlang-oserl: Broken for more than 6 months
2020-08-20 emulators/qemu40: Please consider using qemu or qemu41
2020-08-26 games/linux-darwinia-demo: Broken for more than 6 months
2020-08-26 games/linux-defcon: Broken for more than 6 months
2020-08-26 games/linux-uplink-demo: Broken for more than 6 months
2020-08-26 games/xevil: Broken for more than 6 months
2020-08-26 games/xminesweep: Broken for more than 6 months
2020-08-26 graphics/backfract: Broken for more than 6 months
2020-08-26 japanese/kanjipad: Broken for more than 6 months
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sat, 15 Aug 2020
[ 10:50 rene ] Original commit   Revision:544927 (Only the first 10 of 219 ports in this commit are shown above. View all ports for this commit)
Remove deprecated ports:

2020-08-15 archivers/py-backports.lzma: Uses deprecated version of python
2020-08-15 archivers/py-bup: Uses deprecated version of python
2020-08-15 archivers/py-librtfcomp: Uses deprecated version of python
2020-08-15 audio/blop-lv2: Uses deprecated version of python
2020-08-15 audio/bs2b-lv2: Uses deprecated version of python
2020-08-15 audio/py-gmusicproxy: Uses deprecated version of python
2020-08-15 audio/py-karaoke: Uses deprecated version of python
2020-08-15 audio/py-openal: Uses deprecated version of python
2020-08-15 audio/py-py-jack: Uses deprecated version of python
2020-08-15 audio/py-xmms2: Uses deprecated version of python
2020-08-15 audio/triceratops-lv2: Uses deprecated version of python
2020-08-15 biology/py-biom-format: Uses deprecated version of python
2020-08-15 comms/py-bulksms: Uses deprecated version of python
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Tue, 9 Jun 2020
[ 18:53 yuri ] Original commit   Revision:538337
New port: science/py-pygmo2: Python platform to perform parallel computations of
optimisation tasks
Sat, 30 May 2020
[ 00:57 tobik ] Original commit   Revision:537026 (Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
Clean up some things

Reported by:	portscan
Thu, 28 May 2020
[ 22:05 jmd ] Original commit   Revision:536821
new port: science/xtb

xtb is a semiempirical extended tight-binding program package with
application in computational chemistry and matrials science.

Port is configured to use OpenBLAS to facilitate performance.

WWW: https://github.com/grimme-lab/xtb
Tue, 26 May 2020
[ 16:45 yuri ] Original commit   Revision:536639
New port: science/fastjet: Package for jet finding in pp and e+e- collisions
[ 16:21 yuri ] Original commit   Revision:536638
New port: science/hepmc3: Event record for High Energy Physics Monte Carlo
generators/simulation
Wed, 20 May 2020
[ 02:27 yuri ] Original commit   Revision:535965
Re-add port: science/cp2k: Quantum chemistry and solid state physics software
package; Update 6.1.0 -> 7.1.0-20200518
Tue, 19 May 2020
[ 08:21 yuri ] Original commit   Revision:535843
Re-add port: science/abinit: Full-featured atomic-scale first-principles
simulation software

The taball for the 8.10.3 version was replaced on the upstream website with
significant updates in it.
The new tarball doesn't compile.
I preserved the previous 8.10.3 version tarball so that the package can build.
The new, 9.x version is upcoming.
Sat, 16 May 2020
[ 10:49 sunpoet ] Original commit   Revision:535382
Add py-liac-arff 2.4.0

The liac-arff module implements functions to read and write ARFF files in
Python. It was created in the Connectionist Artificial Intelligence Laboratory
(LIAC), which takes place at the Federal University of Rio Grande do Sul
(UFRGS), in Brazil.

ARFF (Attribute-Relation File Format) is an file format specially created for
describe datasets which are used commonly for machine learning experiments and
softwares. This file format was created to be used in Weka, the best
representative software for machine learning automated experiments.

WWW: https://github.com/renatopp/liac-arff
Fri, 15 May 2020
[ 03:33 yuri ] Original commit   Revision:535261
New port: science/py-moltemplate: Tool to prepare simulations of molecules,
complex molecular assemblies
Thu, 14 May 2020
[ 01:05 yuri ] Original commit   Revision:535195
New port: science/ergo: Quantum chemistry program for large-scale atomic
calculations
Tue, 5 May 2020
[ 15:38 rene ] Original commit   Revision:534093 (Only the first 10 of 492 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

Adjusted for ports rescued since r534032

2020-05-05 audio/festvox-czech: Broken for more than 6 months
2020-05-05 audio/gkrellmvolume2: Broken for more than 6 months
2020-05-05 audio/mixmos: Broken for more than 6 months
2020-05-05 audio/mma: Broken for more than 6 months
2020-05-05 audio/pd-cyclone: Broken for more than 6 months
2020-05-05 audio/shorten: Broken for more than 6 months
2020-05-05 audio/taglib-sharp: Broken for more than 6 months
2020-05-05 audio/xhippo: Broken for more than 6 months
2020-05-05 biology/consed: Broken for more than 6 months
2020-05-05 biology/plinkseq: Broken for more than 6 months
2020-05-05 biology/seqtools: Broken for more than 6 months
(Only the first 15 lines of the commit message are shown above View all of this commit message)
[ 03:58 tobik ] Original commit   Revision:534023
Sort
[ 01:19 yuri ] Original commit   Revision:534004
New port: science/votca: CSG and XTP: libraries for atomistic simulations
Mon, 4 May 2020
[ 19:55 yuri ] Original commit   Revision:533981
New port: science/plumed: PLUgin for MolEcular Dynamics
Sun, 3 May 2020
[ 20:58 yuri ] Original commit   Revision:533880
New port: science/py-kliff: KIM-based Learning-Integrated Fitting Framework
[ 19:38 yuri ] Original commit   Revision:533805
New port: science/py-kim-query: Helper routines for querying the OpenKIM
repository
Tue, 21 Apr 2020
[ 19:33 sunpoet ] Original commit   Revision:532295
Add py-scikit-optimize 0.7.4

Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very)
expensive and noisy black-box functions. It implements several methods for
sequential model-based optimization. skopt aims to be accessible and easy to use
in many contexts.

WWW: https://github.com/scikit-optimize/scikit-optimize
Tue, 14 Apr 2020
[ 15:30 yuri ] Original commit   Revision:531698
science/ncnn: Move to misc/ncnn; Update 20200226 -> 20200413

Reported by:	portscout (update)
Thu, 12 Mar 2020
[ 01:05 yuri ] Original commit   Revision:528260
New port: science/qiskit-aer: Simulator for quantum circuits, including noise
models
Sat, 22 Feb 2020
[ 19:08 rene ] Original commit   Revision:526852 (Only the first 10 of 125 ports in this commit are shown above. View all ports for this commit)
Remove expired ports, all Python-2.7-only:

2020-02-17 audio/decibel-audio-player: Old, uses EOLed python27
2020-02-17 audio/soundconverter: Old, uses EOLed python27
2020-02-19 cad/linuxcnc-devel: Broken, uses EOLed python27
2020-02-19 databases/monetdb: Broken, uses EOLed python27
2020-02-19 databases/py-cql: Broken, uses EOLed python27
2020-02-18 databases/zodb3: Old, uses EOLed python27
2020-02-17 deskutils/gourmet: Old, uses EOLed python27
2020-02-18 devel/py-Products.PlacelessTranslationService: Old, uses EOLed
python27
2020-02-18 devel/py-Products.ZopeVersionControl: Old, uses EOLed python27
2020-02-18 devel/py-Products.statusmessages: Old, uses EOLed python27
2020-02-18 devel/py-collective.z3cform.datetimewidget: Old, uses EOLed python27
2020-02-20 devel/py-five.formlib: Old, uses EOLed python27
2020-02-18 devel/py-five.localsitemanager: Old, uses EOLed python27
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Tue, 28 Jan 2020
[ 18:13 thierry ] Original commit   Revision:524506
Adding R-cran-FAdist, a R package with a collection of probability distributions
that are sometimes used in hydrology, used by math/rkward-kde for its non-
regression tests.
Mon, 27 Jan 2020
[ 15:34 rene ] Original commit   Revision:524263 (Only the first 10 of 220 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

2020-01-27 accessibility/py-papi: Unmaintained, uses EOLed python27
2020-01-27 archivers/py-czipfile: Unmaintained, uses EOLed python27
2020-01-27 audio/boodler: Unmaintained, uses EOLed python27
2020-01-27 audio/dir2ogg: Unmaintained, uses EOLed python27
2020-01-27 audio/jokosher: Unmaintained, uses EOLed python27
2020-01-27 audio/mpdbrowser: Unmaintained, uses EOLed python27
2020-01-27 audio/nekobee: Unmaintained, uses EOLed python27
2020-01-27 audio/patchage: Unmaintained, uses EOLed python27
2020-01-27 audio/py-ao: Unmaintained, uses EOLed python27
2020-01-27 audio/py-id3: Unmaintained, uses EOLed python27
2020-01-27 audio/py-shout: Unmaintained, uses EOLed python27
2020-01-27 audio/py-speex: Unmaintained, uses EOLed python27
2020-01-27 audio/pytone: Unmaintained, uses EOLed python27
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sun, 26 Jan 2020
[ 10:07 yuri ] Original commit   Revision:524168
New port: science/py-h5json: Tools and library for representing HDF5 in JSON
Sat, 18 Jan 2020
[ 18:23 sunpoet ] Original commit   Revision:523439
Add py-pygeometa 0.5.0

pygeometa is a Python package to generate metadata for geospatial datasets.

WWW: https://github.com/geopython/pygeometa
[ 18:23 sunpoet ] Original commit   Revision:523438
Add py-pycsw 2.4.2

pycsw is an OGC CSW server implementation written in Python. Started in 2010
(more formally announced in 2011), pycsw allows for the publishing and discovery
of geospatial metadata via numerous APIs (CSW 2/CSW 3, OpenSearch, OAI-PMH,
SRU), providing a standards-based metadata and catalogue component of spatial
data infrastructures. pycsw is Open Source, released under an MIT license, and
runs on all major platforms (Windows, Linux, Mac OS X).

WWW: https://pycsw.org/
WWW: https://github.com/geopython/pycsw
[ 18:23 sunpoet ] Original commit   Revision:523437
Add py-geolinks 0.2.0

geolinks provides utilities to deal with geospatial links.

WWW: https://github.com/geopython/geolinks
Wed, 15 Jan 2020
[ 16:09 yuri ] Original commit   Revision:523122
Move cad/elmerfem -> science/elmerfem

Also:
* Update COMMENT to reflect how their website decribes it
* Update WWW
* Group USExx lines
Fri, 10 Jan 2020
[ 20:59 rene ] Original commit   Revision:522617 (Only the first 10 of 39 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

2020-01-10 astro/viking: Depends on broken and expiring graphics/mapnik
2020-01-10 audio/slv2: Broken for more than 5 months
2020-01-10 audio/triceratops-lv2: Broken for more than 5 months
2020-01-10 cad/brickutils: Broken for more than 3 months, unmaintained
2020-01-10 deskutils/zanshin: Broken for more than 5 months
2020-01-10 devel/elixir-gen_state_machine: Broken for more than 6 months
2020-01-10 devel/elixir-swarm: Depends on broken and expiring
devel/elixir-gen_state_machine
2020-01-10 devel/erlang-clique: Depends on broken and expiring
devel/erlang-cuttlefish
2020-01-10 devel/erlang-gen_rpc: Broken for more than 6 months
2020-01-10 devel/erlang-msgpack: Broken for more than 6 months
2020-01-10 devel/ocaml-deriving-ocsigen: Broken for more than 6 months
2020-01-10 devel/p5-rpm-build-perl: Broken for more than 7 months
2020-01-10 devel/shedskin: Broken for more than 3 months, unmaintained
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Thu, 9 Jan 2020
[ 16:48 yuri ] Original commit   Revision:522497
New port: science/cdk: Chemistry Development Kit
Wed, 1 Jan 2020
[ 11:46 rene ] Original commit   Revision:521714 (Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
Resurrect ports depending on devel/openmp.

These ports will transition transparantly to openmp from base once
FreeBSD 12.0 reaches end-of-life.

Reported by:	jbeich [1] [2]

[1] https://lists.freebsd.org/pipermail/svn-ports-head/2019-May/210482.html
[2] https://lists.freebsd.org/pipermail/svn-ports-head/2019-December/229648.html
Tue, 31 Dec 2019
[ 17:00 rene ] Original commit   Revision:521645 (Only the first 10 of 116 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

2019-12-31 accessibility/linux-c6-atk: Superseded by CentOS 7
2019-12-31 audio/exaile-devel: this port is older than audio/exaile
2019-12-31 audio/linux-c6-alsa-lib: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-plugins-oss: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-plugins-pulseaudio: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-utils: Superseded by CentOS 7
2019-12-31 audio/linux-c6-flac: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libaudiofile: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libogg: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libsndfile: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libvorbis: Superseded by CentOS 7
2019-12-31 audio/linux-c6-mikmod: Superseded by CentOS 7
2019-12-31 audio/linux-c6-nas-libs: Superseded by CentOS 7
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sun, 29 Dec 2019
[ 12:46 sunpoet ] Original commit   Revision:521284
Add py-geomet 0.2.1

GeoMet converts GeoJSON to WKT/WKB (Well-Known Text/Binary), and vice versa.
Extended WKB/WKT are also supported. Conversion functions are exposed through
idiomatic load/loads/dump/dumps interfaces.

GeoMet is intended to cover all common use cases for dealing with 2D, 3D, and 4D
geometries (including 'Z', 'M', and 'ZM').

WWW: https://github.com/geomet/geomet
Sun, 3 Nov 2019
[ 01:27 yuri ] Original commit   Revision:516378
New port: science/highfive: Header-only C++ HDF5 interface
Fri, 1 Nov 2019
[ 12:06 zeising ] Original commit   Revision:516220
Remove deprecated ports

Remove deprecated ports depending on the soon to be removed
x11/libXxf86misc and graphics/libGLw

2019-11-01 games/xpilot-ng-client: Depends on deprecated x11/libXxf86misc
2019-11-01 science/xmakemol: Depends on expiring graphics/libGLw
Wed, 16 Oct 2019
[ 15:29 rene ] Original commit   Revision:514601 (Only the first 10 of 369 ports in this commit are shown above. View all ports for this commit)
Remove expired ports:

2019-10-16 archivers/freetar: Unfetchable, unmaintained
2019-10-16 archivers/hffzip: Unfetchable, unmaintained
2019-10-16 archivers/hpack.non-usa.only: Unfetchable, unmaintained
2019-10-16 archivers/untar: Unfetchable, unmaintained
2019-10-16 astro/gpsdrive: Unfetchable, unmaintained
2019-10-16 astro/planets: Unfetchable, unmaintained
2019-10-16 audio/ascd: Unfetchable, unmaintained
2019-10-16 audio/audiotag: Unfetchable, unmaintained
2019-10-16 audio/gmidimonitor: Unfetchable, unmaintained
2019-10-16 audio/gmpc-lyricwiki: Unfetchable, unmaintained
2019-10-16 audio/jack_mixer: Unfetchable, unmaintained
2019-10-16 audio/jmusic: Unfetchable, unmaintained
2019-10-16 audio/maplay: Unfetchable, unmaintained
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sun, 22 Sep 2019
[ 19:06 jwb ] Original commit   Revision:512600
science/packmol: Pack molecules in defined regions of space

PACKMOL creates an initial point for molecular dynamics simulations by packing
molecules in defined regions of space. The packing guarantees that short range
repulsive interactions do not disrupt the simulations.
Sat, 31 Aug 2019
[ 08:30 sunpoet ] Original commit   Revision:510359
Sort SUBDIRs
Tue, 27 Aug 2019
[ 04:08 yuri ] Original commit   Revision:509984
Move science/py-onnx -> math/py-onnx

math is a more appropriate category, but neural networks is really
an emerging field in itself and it probably deserves the category
of its own.
Mon, 12 Aug 2019
[ 16:44 yuri ] Original commit   Revision:508752
New port: science/py-tensorflow-estimator: TensorFlow Estimator, an API to
simplify machine learning programming

Dependencies are unusual for science/py-tensorflow-estimator:
science/py-tensorflow imports science/py-tensorflow-estimator in its python
code,
but science/py-tensorflow-estimator is a separate project that depends on
science/py-tensorflow
in order to build.

PR:		226400
Submitted by:	Anthony <amzo1337@gmail.com>
Thu, 8 Aug 2019
[ 21:05 yuri ] Original commit   Revision:508406
New port: science/py-chainer-chemistry: Library for deep learning in biology and
chemistry
[ 20:07 yuri ] Original commit   Revision:508402
New port: science/py-chainer: Deep learning framework
[ 17:53 yuri ] Original commit   Revision:508397
New port: science/py-onnx: Open Neural Network eXchange
Tue, 6 Aug 2019
[ 15:28 yuri ] Original commit   Revision:508257 (Only the first 10 of 36 ports in this commit are shown above. View all ports for this commit)
Re-add science/py-tensorflow: Computation using data flow graphs for scalable
machine learning

Many thanks to Anthony who was highly persistent and skillful in getting the
Tensorflow build on FreeBSD!

PR:		226400
Submitted by:	Anthony <amzo1337@gmail.com>
Fri, 2 Aug 2019
[ 18:44 yuri ] Original commit   Revision:507885
Hook up science/openkim-models to build.
Sat, 20 Jul 2019
[ 21:57 yuri ] Original commit   Revision:507024
New port: science/ncnn: High-performance neural network inference framework
[ 16:51 yuri ] Original commit   Revision:507005
New port: science/wwplot: Plotting tool for experimental physics classes
Fri, 19 Jul 2019
[ 17:51 yuri ] Original commit   Revision:506955
New port: science/kim-api: Framework for reliable, reproducible, portable
molecular simulations
Thu, 11 Jul 2019
[ 16:50 kai ] Original commit   Revision:506415
New port: science/py-ruffus

The Ruffus module is a lightweight way to add support for running
computational pipelines.

Computational pipelines are often conceptually quite simple, especially if
we breakdown the process into simple stages, or separate tasks.

Each stage or task in a computational pipeline is represented by a Python
function. Each Python function can be called in parallel to run multiple
jobs.

Ruffus was originally designed for use in bioinformatics to analyse multiple
genome data sets.

WWW: http://www.ruffus.org.uk
Fri, 28 Jun 2019
[ 06:57 mat ] Original commit   Revision:505268
Remove dupplicate port.

Pointy hat:	yuri
[ 03:51 yuri ] Original commit   Revision:505255
New port: science/molden: Program for molecular and electronic structure
visualization
Sun, 9 Jun 2019
[ 03:26 yuri ] Original commit   Revision:503774
New port: science/smoldyn: Biochemical simulator for molecular diffusion,
surface interactions
Sun, 26 May 2019
[ 04:08 yuri ] Original commit   Revision:502676
New port: science/opensph: Library and graphical tools for running SPH and
N-body simulations
Sat, 25 May 2019
[ 22:02 sunpoet ] Original commit   Revision:502637
Add py-eccodes-python 0.9.0

Python 3 interface to encode and decode GRIB and BUFR files via the ECMWF
ecCodes library.

Features:
- reads and writes GRIB 1 and 2 files,
- reads and writes BUFR 3 and 4 files,
- supports all modern versions of Python 3.7, 3.6, 3.5 and PyPy3,
- works on most Linux distributions and MacOS, the ecCodes C-library is the only
  system dependency,
- PyPI package with no install time build (binds with CFFI ABI level, in-line
  mode),
- supports writing the index of a GRIB file to disk, to save a full-file scan on
  open.

WWW: https://github.com/ecmwf/eccodes-python
Sat, 18 May 2019
[ 05:40 yuri ] Original commit   Revision:501901
New port: science/libvdwxc: Van der Waals density functional (DFT) library
Thu, 16 May 2019
[ 16:00 yuri ] Original commit   Revision:501792
New port: science/simgrid: Simulator of the behavior of large-scale distributed
systems
Sat, 11 May 2019
[ 20:29 yuri ] Original commit   Revision:501303
New port: science/nest: Simulator for spiking neural network models
Fri, 3 May 2019
[ 06:14 yuri ] Original commit   Revision:500698
New port: science/apbs: Electrostatic and solvation properties for complex
molecules
Wed, 1 May 2019
[ 07:16 yuri ] Original commit   Revision:500581
New port: science/pagmo2: Platform to perform parallel computations of
optimization tasks
Sat, 6 Apr 2019
[ 16:27 yuri ] Original commit   Revision:498146
New port: science/cp2k-data: Data for cp2k quantum chemistry package
Sun, 31 Mar 2019
[ 08:24 yuri ] Original commit   Revision:497392
New port: science/py-qcengine: Quantum chemistry program executor and IO
standardizer (QCSchema)
[ 08:12 yuri ] Original commit   Revision:497391
New port: science/py-qcelemental: Essentials for quantum chemistry

Number of commits found: 557 (showing only 100 on this page)

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