20:15 sem 

science/cdcl         -> update to 5.3 and use gtk by default
science/cdcl-gtk     -> delete
science/ruby-dcl     -> update to 1.5 and use gtk by default
science/ruby-dcl-gtk -> delete
science/ruby-gphys   -> update to 0.3.5 and fix dependency
science/gave         -> update to 1.1.3 and fix dependency

PR:             ports/76853
Submitted by:   maintainer

14:17 pav 

McStas - Monte Carlo simulation of neutron instruments

McStas is an ongoing project to create a general tool for simulating neutron
scattering instruments. The project is conducted at Risoe National Laboratory
in cooperation with the ILL.

McStas is based on a compiler that reads a high-level specification language
defining the instrument to be simulated and produces C code that performs the
Monte Carlo Simulation.

WWW: http://neutron.risoe.dk/

PR:             ports/66031
Submitted by:   Joerg Pulz <Joerg.Pulz@frm2.tum.de>

08:44 pav 

- Move emulators/qcl -> science/qcl on maintainer's request.

Repocopy by:    marcus

15:01 thierry 

Add buddy 2.4, a Binary Decision Diagram library.

PR:             71221
Submitted by:   Leland Wang

19:03 hq 

DeViSoR is abbreviated for "Design and Visualization of Software Resource". The
DeViSoRGrid application is part of that software family and is primarily used
for the following tasks, so far in 2D only:

  * Geometry generation
  * Manual coarse mesh generation
  * Grid visualisation at all levels

All of this can be done in a very confortable manner using a simple point and
click interface like in common vector-based image processing software. Both the
reliable FEAT file format and the new FEAST format with integrated parallelism
are supported.

WWW:    http://www.featflow.de/

PR:             75973
Submitted by:   Pedro F. Giffuni <giffunip@asme.org>

21:52 glewis 

Add a port of udunits:

 The Unidata units library, udunits, supports conversion of unit
 specifications between formatted and binary forms, arithmetic
 manipulation of unit specifications, and conversion of values
 between compatible scales of measurement.

 WWW: http://www.unidata.ucar.edu/packages/udunits/

Obtained from:  Gentoo (partially)

20:46 thierry 

Add isaac-cfd 4.2, Integrated Solution Algorithm for Arbitrary
Configuration.

PR:             75529
Submitted by:   Pedro F. Giffuni

23:30 pav 

Add gsystem, a virtual reality simulation framework, specialised on life and
evolution simulation. I'm a main developer of this framework and I will also
keep the FreeBSD port up-to-date, as I'm using FreeBSD as my primary platform.
See http://www.g-system.at for details.

PR:             ports/75466
Submitted by:   Raphael Langerhorst <raphael-langerhorst@gmx.at>

23:08 thierry 

Add x11iraf 1.3.1, which provides graphical tools to work with IRAF.

PR:             70816
Submitted by:   David Syphers.

04:52 sem 

Slave port to science/libsvm

PR:             ports/73981
Submitted by:   Rong-En Fan <rafan(at)infor.org>

21:38 pav 

SIMLIB/C++ is the SIMulation LIBrary for C++ programming language. You can
create models directly in C++ language with the use of predefined simulation
tools from the library. SIMLIB allows object-oriented description of models
based on simulation abstractions. Current version allows a description of
continuous, discrete, combined, 2D/3D vector, and fuzzy models.

Requested by:   Roman Divacky

22:53 pav 

Add omnetpp, a public-source, component-based, modular and open-architecture
simulation environment with strong GUI support and an embeddable simulation
kernel.  Its primary application area is the simulation of communication
networks and because of its generic and flexible architecture, it has been
successfully used in other areas like the simulation of IT systems, queueing
networks, hardware architectures and business processes as well.

PR:             ports/73920
Submitted by:   Bjoern Koenig <bkoenig@cs.tu-berlin.de>

22:18 thierry 

Add getdp 1.0.0, a rather general finite element solver using mixed
finite elements.

Suggested by:   Pedro F. Giffuni.

01:36 maho 

New port science/gromacs
GROMACS is a versatile package to perform molecular dynamics,
i.e. simulate the Newtonian equations of motion for systems
with hundreds to millions of particles, and also the World's
fastest Molecular Dynamics under GPL.

PR:             71211
Submitted by:   Stephen Montgomery-Smith <stephen@math.missouri.edu>
Reviewed by:    Bruno Afonso <brunomiguel@dequim.ist.utl.pt>

08:37 ijliao 

add py-scipy 0.3
Scientific tools for Python

16:34 pav 

Add vmd, a molecular visualization program for displaying, animating, and
analyzing large biomolecular systems using 3-D graphics and built-in scripting.

PR:             ports/70509
Submitted by:   Stephen Montgomery-Smith <stephen@math.missouri.edu>

08:45 maho 

Add abinit, calculates total energy, charge density
and electronic structure of systems.

15:44 markus 

Add kst 0.97.

kst is a program for looking at data streams. It can plot:

   - x-y plots
   - power spectra
   - histograms
   - equations (including equations of data streams).
   - data in files which are being updated as data is being logged,
     in which case it can act as a plotter for a chart recorder.
   - much more

You can use the mouse to rapidly zoom into interesting parts of the plots.

In addition to a complete GUI, kst has a convenient command line interface
for rapid access to plotting data in files. kst can read data from stdin.
It provides a DCOP interface for remote manipulation, and supports several
file formats in use in scientific projects around the world.

WWW: http://omega.astro.utoronto.ca/kst/
WWW: http://extragear.kde.org/apps/kst.php

07:29 kris 

Remove category pkg/COMMENT files in favour of a COMMENT variable in the
category makefile.

Submitted by:   Matthew Seaman <m.seaman@infracaninophile.co.uk>
PR:             59651

23:34 thierry 

Add ovt 2.3, the Orbit Visualization Tool.

PR:             57860
Submitted by:   Mykola Khotyaintsev <ko@nest.irfu.se>

04:50 maho 

A Density functional software. This software has a unique design
based upon the DFT++ algebraic framework introduced in Computer
Physics Communications 128, 1-45 (June 2000).
This framework allows us to transparently separate the computational
guts (cache optimization, parallelization, etc.) from the introduction
of new representations (plane waves, wavelets) and new
physics (new density functionals, linear response theory,
dielectric solutions).
The software is fully cache and register optimized,
and runs in serial, threaded, MPI and mixed threaded-MPI
parallel environments.

09:32 maho 

The PSI3 suite of quantum chemical programs is designed for efficient,
high-accuracy calculations of properties of small to medium-sized molecules.
The package's current capabilities include a variety of Hartree-Fock,
coupled cluster, complete-active-space self-consistent-field,
and multi-reference configuration interaction models.
Molecular point-group symmetry is utilized throughout to maximize efficiency.

16:52 pav 

Add gave, a gtk+ based grid data analyser and viewer written in Ruby.

PR:             ports/64249
Submitted by:   Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>

16:34 pav 

Add ruby-gphys, a multi-purpose class to handle gridded physical
quantities for Ruby.

PR:             ports/64248
Submitted by:   Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>

23:54 pav 

Add ruby-dcl, a ruby interface to DCL, a scienific graphical library.
Add ruby-dcl-gtk, a slave port for ruby-dcl with gtk patches.

PR:             ports/62873, ports/62874
Submitted by:   <murashin@edamame.summing.com>

22:44 pav 

Add cdcl-gtk, a slave port for science/cdcl with enabled Gtk support.

PR:             ports/62872
Submitted by:   Shin'ya Murakami <murashin@edamame.summing.com>

22:35 pav 

Add cdcl, a scientific graphic library for geoscience

PR:             ports/62871
Submitted by:   Shin'ya Murakami <murashin@edamame.summing.com>

22:55 pav 

Unhook hdf* ports in graphics, hook them in science.

03:09 pav 

Gramps (Genealogical Research and Analysis Management Programming System)
is an open source genealogy program. It is written in Python, using the
GTK/GNOME interface.

WWW: http://gramps.sourceforge.net

PR:             ports/62171
Submitted by:   Andreas Fehlner <fehlner@gmx.de>

09:08 glewis 

. Welcome felt to the science category.

PR:             58178
Submitted by:   Pedro F. Giffuni <giffunip@yahoo.com>

04:19 ijliao 

add kmovisto 0.5.1
A real 3-D molecule viewer

02:30 maho 

Remove #
chemtool-devel is now real developer version of chemtool.

12:45 edwin 

New port: science/at Acoustic ToolBox

        The Acoustic ToolBox includes four acoustic models:

           BELLHOP: A beam/ray trace code
           KRAKEN:  A normal mode code
           SCOOTER: A finite element FFP code
           SPARC:   A time domain FFP code

        A common input structure has been used throughout so that
        only minor modifications are needed to switch from one
        program to another.

        All the models produce shade files which can be processed
        using a common set of plotting routines to plot transmission
        loss vs. range or vs. range and depth.  These plotting
        routines are contained in the GLOBAL directory.

PR:             ports/42378
Submitted by:   Heiner Strauss <heiner@bilch.com>

09:50 maho 

Added a Numerical Hartree-Fock Program for Diatomic Molecules.
This program package calcluates virtually exact solution of the
Hartree-Fock and Hartree-Fock-Salter equations for diatomic
molecules (distributed under GPL).

21:34 kris 

Comment out chemtool-devel, which provides a duplicate chemtool-1.6 version
since the upgrade of chemtool.

Pointy hat to:  maho

01:29 maho 

Added new port chemtool-devel.
Chemtool is a nice drawing tool for chemist, however,
it has not been released almost 1 year. So I added
developer version as -devel.

Have fun!

02:33 maho 

Add new port science/ghemical
a computational chemistry software package

00:09 marcus 

Add gchempaint, a 2D chemical structure editor for GNOME 2.

PR:             50539
Submitted by:   Pav Lucistnik <pav@oook.cz>

00:04 marcus 

Add gchemutils a set of C++ class and GTK+-2 widgets related to chemistry.

PR:             50538
Submitted by:   Pav Lucistnik <pav@oook.cz>

10:22 ijliao 

add mpb 1.4.2
MIT Photonic-Bands

07:28 ijliao 

add libctl 2.2
Control Language Library

17:04 ijliao 

add openbabel 1.100.0
Chemistry file translation program

10:02 ijliao 

add xloops-ginac 0.1.3
A program calculating Feynman diagrams

20:11 ijliao 

add flounder 0.32a
A quick way to visualize regularly spaced 4D data

09:26 ijliao 

add mmtk 2.2
An Open Source program library for molecular simulation applications

PR:             42332
Submitted by:   Glenn Johnson <glennpj@charter.net>

08:39 ijliao 

add glens 0.3
OpenGL gravitational lens simulator

06:52 ijliao 

add bblimage 0.66
A set of software tools for medical image processing

06:53 ijliao 

add mpqc-mpich

PR:             40631
Submitted by:   Nakata Maho <chat95@mbox.kyoto-inet.or.jp>

03:31 ijliao 

add oases 2.2
Ocean Acoustics and Seismic Exploration Synthesis

PR:             38548
Submitted by:   Heiner Strau? <heiner@bilch.com>

03:59 ijliao 

add euler 1.60.4
A program computes with real and complex numbers and matrices