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non port: science/Makefile

Number of commits found: 737 (showing only 100 on this page)

«  1 | 2 | 3 | 4 | 5 | 6 | 7 | 8  »  

Wednesday, 19 Dec 2018
02:19 yuri search for other commits by this committer
New port: science/h5z-zfp: Registered ZFP compression plugin for HDF5
Original commitRevision:487783 
Tuesday, 18 Dec 2018
06:36 yuri search for other commits by this committer
New port: science/py-GPyOpt: Bayesian optimization toolbox based on GPy
Original commitRevision:487730 
06:24 yuri search for other commits by this committer
New port: science/py-GPy: Gaussian process toolbox
Original commitRevision:487729 
06:20 yuri search for other commits by this committer
New port: science/py-paramz: Parameterization framework
Original commitRevision:487728 
Monday, 17 Dec 2018
02:58 yuri search for other commits by this committer
New port: science/drawxtl: Crystal structure visualization tool
Original commitRevision:487648 
Tuesday, 11 Dec 2018
13:02 rene search for other commits by this committer
Remove expired ports:
2018-12-10 net/g2ipmsg: GNOME 2 application
2018-12-10 net/grdesktop: GNOME 2 application
2018-12-10 textproc/gnome-spell: GNOME 2 application
2018-12-10 textproc/sagasu: GNOME 2 application
2018-12-10 deskutils/planner: GNOME 2 application
2018-12-10 deskutils/multisync: GNOME 2 application
2018-12-10 deskutils/drivel: GNOME 2 application
2018-12-10 deskutils/notecase: GNOME 2 application
2018-12-10 deskutils/gtodo: GNOME 2 application
2018-12-10 deskutils/gtweakui: GNOME 2 application
2018-12-10 deskutils/gnotime: GNOME 2 application
2018-12-10 deskutils/gruler: GNOME 2 application
2018-12-10 japanese/gjiten: GNOME 2 application
2018-12-10 graphics/truevision: GNOME 2 application
2018-12-10 graphics/gx: GNOME 2 application
2018-12-10 graphics/amide: GNOME 2 application
2018-12-10 graphics/cbrpager: GNOME 2 application
2018-12-10 www/gurlchecker: GNOME 2 application
2018-12-10 security/gpass: GNOME 2 application
2018-12-10 security/libgnomesu: GNOME 2 application
2018-12-10 security/gnome-gpg: GNOME 2 application
2018-12-10 devel/gnome-vfs-monikers: GNOME 2 application
2018-12-10 ftp/gwget: GNOME 2 application
2018-12-10 print/gribouy: GNOME 2 application
2018-12-10 print/gnomephotoprinter: GNOME 2 application
2018-12-10 print/ggv: GNOME 2 application
2018-12-10 print/gnome-cups-manager: GNOME 2 application
2018-12-10 editors/conglomerate: GNOME 2 application
2018-12-10 misc/gregexp: GNOME 2 application
2018-12-10 science/linsmith: GNOME 2 application
2018-12-10 games/grhino: GNOME 2 application
2018-12-10 games/gnono: GNOME 2 application
2018-12-10 games/gnomekiss: GNOME 2 application
2018-12-10 games/gtktetcolor: GNOME 2 application
2018-12-10 games/gturing: GNOME 2 application
2018-12-10 games/gtetrinet: GNOME 2 application
2018-12-10 games/gdado: GNOME 2 application
2018-12-10 games/monkeybubble: GNOME 2 application
2018-12-10 games/teg: GNOME 2 application
2018-12-10 games/gnomeattacks: GNOME 2 application
2018-12-10 games/gnomebreakout: GNOME 2 application
2018-12-10 x11-clocks/gtubeclock: GNOME 2 application
2018-12-10 x11-clocks/sanduhr: GNOME 2 application
2018-12-10 audio/grip: GNOME 2 application
2018-12-10 audio/jack-rack: GNOME 2 application
2018-12-10 math/gdcalc: GNOME 2 application
2018-12-10 x11/brightside: GNOME 2 application
2018-12-10 x11-fm/gnome-commander2: GNOME 2 application
2018-12-10 multimedia/quark: GNOME 2 application
2018-12-10 astro/celestia-gnome: GNOME 2 application
2018-12-10 comms/gmfsk: GNOME 2 application
2018-12-10 comms/ge-x2212: GNOME 2 application
2018-12-10 comms/efax-gtk: GNOME 2 application
2018-12-10 sysutils/gnome-pkgview: GNOME 2 application
2018-12-10 sysutils/fusefs-gnome-vfs: GNOME 2 application
2018-12-10 sysutils/gai-leds: GNOME 2 application
2018-12-10 sysutils/gnome-device-manager: GNOME 2 application
2018-12-10 sysutils/battfink: GNOME 2 application
2018-12-10 sysutils/cog: GNOME 2 application
2018-12-10 sysutils/gcdmaster: GNOME 2 application
Original commitRevision:487235 
Thursday, 6 Dec 2018
20:30 sunpoet search for other commits by this committer
Add py-pygeodesy 18.11.12

PyGeodesy is a pure Python implementation of geodesy tools for various
ellipsoidal and spherical earth models using precision trigonometric,
vector-based and approximate methods for geodetic (lat-/longitude) and
geocentric cartesian (x/y/z) coordinates.

WWW: https://github.com/mrJean1/PyGeodesy
Original commitRevision:486781 
Tuesday, 27 Nov 2018
08:15 yuri search for other commits by this committer
New port: science/yoda: Particle physics package with classes for data analysis,
histogramming
Original commitRevision:485990 
Wednesday, 21 Nov 2018
22:34 yuri search for other commits by this committer
New port: science/quantum-espresso-pseudopotentials: Pseudopotentials for use
with Quantum Espresso
Original commitRevision:485564 
Monday, 19 Nov 2018
21:56 yuri search for other commits by this committer
New port: science/berkeleygw: Scientific program aimed at the ab initio virtual
experimentation

Only a serial version for now.
Original commitRevision:485365 
Friday, 16 Nov 2018
02:55 yuri search for other commits by this committer
New port: science/opensim-core: Software for modeling of musculoskeletal
structures
Original commitRevision:485059 
Thursday, 15 Nov 2018
06:40 yuri search for other commits by this committer
New port: science/simbody: Multibody dynamics library for (bio)mechanical
systems simulation
Original commitRevision:485003 
Tuesday, 13 Nov 2018
18:35 rm search for other commits by this committer
Survival analysis in Python, including Kaplan Meier, Nelson Aalen and regression

WWW: https://github.com/CamDavidsonPilon/lifelines/
Original commitRevision:484893 
Monday, 12 Nov 2018
03:02 yuri search for other commits by this committer
New port: science/sparta: Gas simulator: SPARTA DSMC software package
Original commitRevision:484789 
Monday, 5 Nov 2018
05:16 yuri search for other commits by this committer
New port: science/esys-particle: Particle-based numerical modelling software
Original commitRevision:484170 
Sunday, 4 Nov 2018
17:18 thierry search for other commits by this committer
bft, ecs, fvm, mei and ncs have been merged to code_saturne.
Original commitRevision:484112 
08:24 yuri search for other commits by this committer
New port: science/liggghts: Discrete element method particle simulation software
Original commitRevision:483965 
Wednesday, 31 Oct 2018
23:05 yuri search for other commits by this committer
New port: science/latte: Quantum chemistry: Density functional tight binding
molecular dynamics
Original commitRevision:483624 
Tuesday, 30 Oct 2018
04:36 yuri search for other commits by this committer
New port: science/gpaw-setups: Setups (data files) for py-gpaw, the DFT quantum
chemistry software
Original commitRevision:483445 
Thursday, 25 Oct 2018
07:36 yuri search for other commits by this committer
New port: science/coordgenlibs: Schrodinger-developed 2D coordinate generation
Original commitRevision:482958 
07:24 yuri search for other commits by this committer
New port: science/maeparser: Parser for Schrodinger Maestro files
Original commitRevision:482957 
Wednesday, 24 Oct 2018
05:36 yuri search for other commits by this committer
New port: science/molsketch: 2D molecule editor
Original commitRevision:482879 
Sunday, 21 Oct 2018
17:56 yuri search for other commits by this committer
New port: science/erkale: Quantum chemistry program to solve the electronic
structure of atoms
Original commitRevision:482718 
17:52 yuri search for other commits by this committer
New port: science/py-avogadrolibs: Python bindings for Avogadro2 chemistry
libraries
Original commitRevision:482717 
Thursday, 18 Oct 2018
21:21 yuri search for other commits by this committer
New port: science/mmtf: C++ implementation of the MMTF API, decoder and encoder
Original commitRevision:482378 
Wednesday, 17 Oct 2018
01:04 yuri search for other commits by this committer
New port: science/avogadro2: Chemical editor and visualization application
Original commitRevision:482266 
01:02 yuri search for other commits by this committer
New port: science/avogadrolibs: Avogadro2 libraries for chemical editor and
visualization applications
Original commitRevision:482265 
Tuesday, 16 Oct 2018
22:58 yuri search for other commits by this committer
New port: science/libmsym: Molecular point group symmetry library
Original commitRevision:482264 
Sunday, 14 Oct 2018
23:15 yuri search for other commits by this committer
New port: science/wxmacmolplt: Graphical user interface principally for the
GAMESS program
Original commitRevision:482124 
03:18 yuri search for other commits by this committer
Re-add port: science/gamess-us: General Atomic and Molecular Electronic
Structure System (US)

It used to be in science/gamess and was removed in 2014.
Original commitRevision:482018 
Monday, 8 Oct 2018
07:52 yuri search for other commits by this committer
New port: science/simint: Obara-Saika (OS) method of calculating electron
repulsion integrals
Original commitRevision:481519 
Sunday, 7 Oct 2018
21:54 yuri search for other commits by this committer
New port: science/molgif: Tool to create GIF animations of molecules
Original commitRevision:481495 
00:19 yuri search for other commits by this committer
biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/

Port changes:
* Take maintainership
* Implement the 'benchmarks' target, and stop installing benchmarks
* Add USES=gmake
* Update license
* Change MASTER_SITES and WWW to https
* Silence some commands
Original commitRevision:481406 
Tuesday, 25 Sep 2018
18:11 yuri search for other commits by this committer
New port: science/bagel: Brilliantly Advanced General Electronic-structure
Library
Original commitRevision:480687 
Sunday, 23 Sep 2018
08:43 yuri search for other commits by this committer
New port: science/elk: All-electron full-potential linearised
augmented-planewave code
Original commitRevision:480461 
Friday, 21 Sep 2018
07:11 yuri search for other commits by this committer
New port: science/py-PyFR: Framework for solving advection-diffusion type
problems
Original commitRevision:480230 
Wednesday, 19 Sep 2018
21:33 yuri search for other commits by this committer
New port: science/py-chempy: Package useful useful for solving problems in
chemistry
Original commitRevision:480113 
Friday, 14 Sep 2018
07:44 yuri search for other commits by this committer
New port: science/luscus: Molecular editor and viewer
Original commitRevision:479761 
05:37 yuri search for other commits by this committer
New port: science/py-phono3py: Software to calculate phonon-phonon interaction
and related properties
Original commitRevision:479760 
05:01 yuri search for other commits by this committer
New port: science/py-phonopy: Package for phonon calculations at harmonic and
quasi-harmonic levels
Original commitRevision:479759 
03:10 yuri search for other commits by this committer
New port: science/py-molmod: Collection of molecular modelling tools for python
Original commitRevision:479756 
Wednesday, 12 Sep 2018
22:25 yuri search for other commits by this committer
New port: science/dftbplus: Package for performing fast atomistic simulations
Original commitRevision:479622 
03:00 yuri search for other commits by this committer
New port: science/openmx: Nanoscale material simulations using density
functional theories (DFT)
Original commitRevision:479581 
Monday, 10 Sep 2018
05:53 yuri search for other commits by this committer
New port: science/msms: Program to efficiently compute molecular surfaces
Original commitRevision:479360 
Sunday, 9 Sep 2018
20:57 yuri search for other commits by this committer
New port: science/lm: Software for sampling trajectories of the
reaction-diffusion equations
Original commitRevision:479335 
Saturday, 8 Sep 2018
23:28 yuri search for other commits by this committer
New port: science/namd: Computer software for molecular dynamics simulation
Original commitRevision:479263 
Thursday, 6 Sep 2018
06:31 yuri search for other commits by this committer
New port: science/lammps: Classical molecular dynamics code with a focus on
materials modeling
Original commitRevision:479085 
05:14 yuri search for other commits by this committer
New port: science/mdynamix: General purpose molecular dynamics code
Original commitRevision:479084 
Tuesday, 4 Sep 2018
21:28 yuri search for other commits by this committer
New port: science/cp2k: Quantum chemistry and solid state physics software
package
Original commitRevision:478991 
15:05 yuri search for other commits by this committer
New port: science/atom: Program for DFT calculations in atoms
Original commitRevision:478966 
15:03 yuri search for other commits by this committer
New port: science/libgridxc: Library to compute the exchange and correlation
energy and potentials
Original commitRevision:478965 
06:07 yuri search for other commits by this committer
Remove science/mpqc-mpich: Enable MPI option in science/mpqc by default

* MPICH option in science/mpqc is renamed to MPI, because MPI exists in many
other
  ports and there's MPI_DESC predefined for it.
* MPI option in science/mpqc is made default.
Original commitRevision:478925 
Monday, 3 Sep 2018
17:51 yuri search for other commits by this committer
New port: science/siesta: Program to perform efficient electronic structure
calculations
Original commitRevision:478886 
04:09 yuri search for other commits by this committer
New port: science/wannier90: Maximally-localized Wannier functions (MLWFs) and
Wannier90
Original commitRevision:478841 
Sunday, 2 Sep 2018
21:10 yuri search for other commits by this committer
New port: science/fleur: FLAPW code for atomic computations in quantum chemistry
and physics
Original commitRevision:478820 
07:49 yuri search for other commits by this committer
New port: science/dalton: Powerful molecular electronic structure program for
quantum chemistry
Original commitRevision:478766 
06:43 yuri search for other commits by this committer
New port: science/teem: Libraries for representing, processing and visualizing
scientific data
Original commitRevision:478759 
Saturday, 1 Sep 2018
18:31 yuri search for other commits by this committer
New port: science/py-gpaw:  DFT and beyond within the projector-augmented wave
method in chemistry
Original commitRevision:478713 
18:17 yuri search for other commits by this committer
New port: science/py-ase: Atomic simulation environment
Original commitRevision:478712 
06:30 yuri search for other commits by this committer
New port: science/jdftx: Software for joint density functional theory in
chemistry
Original commitRevision:478654 
Friday, 31 Aug 2018
06:45 yuri search for other commits by this committer
New port: science/qbox: First-principles molecular dynamics code
Original commitRevision:478522 
Tuesday, 28 Aug 2018
00:57 yuri search for other commits by this committer
New port: science/libint2: Evaluate the integrals in modern atomic and molecular
theory

Repocopy of science/libint.
science/libint is at version 1.X, is incompatible, and is used by several other
packages.
Original commitRevision:478276 
Monday, 27 Aug 2018
07:56 yuri search for other commits by this committer
New port: science/madness: Multiresolution adaptive numeric environment for
scientific simulation
Original commitRevision:478180 
06:15 yuri search for other commits by this committer
New port: science/datawarrior: Chemistry-aware multi-purpose data visualization
and analysis program
Original commitRevision:478179 
Sunday, 26 Aug 2018
19:04 yuri search for other commits by this committer
New port: science/multiwfn: Multifunctional wavefunction analysis for quantum
chemistry
Original commitRevision:478163 
Saturday, 25 Aug 2018
18:08 yuri search for other commits by this committer
New port: science/gabedit: Graphical user interface for several chemistry
software packages
Original commitRevision:478077 
Friday, 24 Aug 2018
17:54 yuri search for other commits by this committer
New port: science/octopus: Scientific program aimed at the ab initio virtual
experimentation
Original commitRevision:477973 
Thursday, 23 Aug 2018
22:00 yuri search for other commits by this committer
New port: science/nwchem: High-performance computational chemistry sotware
Original commitRevision:477927 
Tuesday, 21 Aug 2018
04:31 yuri search for other commits by this committer
New port: science/qwalk: Quantum Monte Carlo package for quantum chemistry
computations
Original commitRevision:477701 
Monday, 20 Aug 2018
07:44 yuri search for other commits by this committer
New port: science/qmcpack: Many-body ab initio Quantum Monte Carlo code for
quantum chemstry
Original commitRevision:477634 
Sunday, 19 Aug 2018
23:16 yuri search for other commits by this committer
New port: science/chrono: C++ library for multi-physics simulation
Original commitRevision:477607 
Thursday, 9 Aug 2018
08:13 yuri search for other commits by this committer
Re-add port: science/xdrawchem: Two-dimensional molecule drawing program
Original commitRevision:476726 
Wednesday, 8 Aug 2018
19:09 brooks search for other commits by this committer
Remove broken and expired port which also depends on clang38 (on 10).
Original commitRevision:476658 
Thursday, 19 Jul 2018
19:19 yuri search for other commits by this committer
New port: science/xcrysden: Crystalline and molecular structure visualisation
program
Original commitRevision:474971 
Wednesday, 18 Jul 2018
21:47 yuri search for other commits by this committer
New port: science/quantum-espresso: Package for research in electronic
structure, simulation, optimization
Original commitRevision:474904 
Monday, 9 Jul 2018
04:41 yuri search for other commits by this committer
New port: science/openstructure: Molecular modelling and visualization
environment
Original commitRevision:474223 
Sunday, 8 Jul 2018
04:45 yuri search for other commits by this committer
New port: science/coot: Crystallographic Object-Oriented Toolkit
Original commitRevision:474154 
01:27 yuri search for other commits by this committer
New port: science/clipper: Libraries for the organisation of crystallographic
data
Original commitRevision:474150 
00:39 yuri search for other commits by this committer
New port: science/libssm: C++ toolkit for superposition of macromolecules
Original commitRevision:474148 
00:24 yuri search for other commits by this committer
New port: science/libccp4: Protein X-ray crystallography toolkit
Original commitRevision:474147 
Saturday, 7 Jul 2018
23:32 yuri search for other commits by this committer
New port: science/mmdb2: C++ toolkit for working with macromolecular coordinate
files
Original commitRevision:474143 
Sunday, 1 Jul 2018
05:22 yuri search for other commits by this committer
New port: science/py-rmf: Library to support reading and writing of Rich
Molecular Format files
Original commitRevision:473652 
Friday, 29 Jun 2018
09:04 yuri search for other commits by this committer
New port: science/rmf: Library to support reading and writing of Rich Molecular
Format files
Original commitRevision:473535 
08:34 yuri search for other commits by this committer
New port: science/py-ScientificPython: Various Python modules for scientific
computing
Original commitRevision:473533 
Thursday, 28 Jun 2018
21:18 sunpoet search for other commits by this committer
Add eccodes 2.8.0

ecCodes is a package developed by ECMWF which provides an application
programming interface and a set of tools for decoding and encoding messages in
the following formats:
- WMO FM-92 GRIB edition 1 and edition 2
- WMO FM-94 BUFR edition 3 and edition 4
- WMO GTS abbreviated header (only decoding).

A useful set of command line tools provide quick access to the messages. C,
Fortran 90 and Python interfaces provide access to the main ecCodes
functionality.

ecCodes is an evolution of GRIB-API. It is designed to provide the user with a
simple set of functions to access data from several formats with a key/value
approach.

For GRIB encoding and decoding, the GRIB-API functionality is provided fully in
ecCodes with only minor interface and behaviour changes. Interfaces for C,
Fortran 90 and Python are all maintained as in GRIB-API. However, the GRIB-API
Fortran 77 interface is no longer available.

WWW: https://software.ecmwf.int/wiki/display/ECC
Original commitRevision:473515 
Sunday, 24 Jun 2018
20:05 sunpoet search for other commits by this committer
Add py-kinematics 0.0.7

kinematics is Python package to perform attitude kinematics. It is written
completely in Python and only requires numpy as a runtime dependency.

WWW: https://github.com/skulumani/kinematics
Original commitRevision:473214 
Monday, 18 Jun 2018
02:34 yuri search for other commits by this committer
New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module
with only pyFFTW support
Original commitRevision:472666 
Sunday, 17 Jun 2018
21:25 yuri search for other commits by this committer
science/Makefile: Fix sortedness
Original commitRevision:472638 
21:24 yuri search for other commits by this committer
New port: science/py-PyQuante: Quantum chemistry in Python
Original commitRevision:472636 
02:42 yuri search for other commits by this committer
New port: science/dft_tools: Interface to DFT codes in TRIQS
Original commitRevision:472591 
Saturday, 16 Jun 2018
23:24 yuri search for other commits by this committer
New port: science/triqs: Toolbox for Research on Interacting Quantum Systems
Original commitRevision:472576 
00:37 yuri search for other commits by this committer
New port: science/py-abipy: Library for analyzing the results produced by ABINIT
Original commitRevision:472505 
Friday, 15 Jun 2018
23:49 yuri search for other commits by this committer
New port: science/py-pymatgen: Python Materials Genomics is a robust materials
analysis code
Original commitRevision:472503 
22:28 yuri search for other commits by this committer
New port: science/py-spglib: Library for finding and handling crystal symmetries
Original commitRevision:472499 
17:42 yuri search for other commits by this committer
New port: science/spglib: C library for finding and handling crystal symmetries
Original commitRevision:472472 
Thursday, 14 Jun 2018
05:52 yuri search for other commits by this committer
New port: science/atompaw: Tool for projector augmented wave functions for
molecular simulations
Original commitRevision:472355 
05:49 yuri search for other commits by this committer
Re-add port: science/abinit: Full-featured atomic-scale first-principles
simulation software

I couldn't make MPI work, created a bug report.
Will add DOCS and EXAMPLES options later.

PR:		219025
Original commitRevision:472353 
Thursday, 7 Jun 2018
00:40 rene search for other commits by this committer
Remove science/orthanc and dependent ports, it has expired
Original commitRevision:471894 
Friday, 25 May 2018
21:44 tcberner search for other commits by this committer
Update lang/ghc 8.4.2 and the hs-* ports the newer versions

* Update lang/ghc to 8.4.2
* Update the boostrap compiler to 8.4.1
* Update the many hs-* ports
* Bump the rest

Thanks a lot to arrowd for doing all the heavy lifting :)

PR:		227968
Exp-run by:	antoine
Submitted by:	arrowd
Differential Revision:	https://reviews.freebsd.org/D15005
Original commitRevision:470870 
Monday, 14 May 2018
00:16 yuri search for other commits by this committer
New port: science/py-MDAnalysisTests: Test code and the trajectory data for test
cases of MDAnalysis
Original commitRevision:469842 

Number of commits found: 737 (showing only 100 on this page)

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