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Port details
R-cran-Epi Package for statistical analysis in epidemiology
2.47 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: tota@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2011-09-17 07:00:53
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: GPLv2
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/R-cran-Epi-2.47/catalog.mk
  2. /usr/local/share/licenses/R-cran-Epi-2.47/LICENSE
  3. /usr/local/share/licenses/R-cran-Epi-2.47/GPLv2
Collapse this list.
Dependency lines:
  • R-cran-Epi>0:science/R-cran-Epi
To install the port:
cd /usr/ports/science/R-cran-Epi/ && make install clean
To add the package, run one of these commands:
  • pkg install science/R-cran-Epi
  • pkg install R-cran-Epi
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: R-cran-Epi
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
R-cran-Epi
ABIlatestquarterly
FreeBSD:11:aarch64pkg-fallout2.40_1
FreeBSD:11:amd642.442.44
FreeBSD:11:armv6pkg-fallout2.40_1
FreeBSD:11:i3862.442.44
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch642.322.47
FreeBSD:12:amd642.472.47
FreeBSD:12:armv62.322.41
FreeBSD:12:armv72.322.41
FreeBSD:12:i3862.472.47
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-fallout2.44
FreeBSD:13:aarch642.472.47
FreeBSD:13:amd642.472.47
FreeBSD:13:armv62.42pkg-fallout
FreeBSD:13:armv72.472.47
FreeBSD:13:i3862.472.47
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc64pkg-fallout2.47
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch642.47pkg-fallout
FreeBSD:14:amd642.47pkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv72.47pkg-fallout
FreeBSD:14:i3862.47pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc642.47pkg-fallout
FreeBSD:14:riscv64pkg-falloutpkg-fallout
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. R-cran-cmprsk>0 : science/R-cran-cmprsk
  2. R-cran-etm>0 : science/R-cran-etm
  3. R-cran-plyr>0 : devel/R-cran-plyr
  4. R-cran-dplyr>0 : math/R-cran-dplyr
  5. R-cran-numDeriv>0 : math/R-cran-numDeriv
  6. R-cran-data.table>0 : devel/R-cran-data.table
  7. R-cran-zoo>0 : math/R-cran-zoo
  8. R-cran-magrittr>0 : devel/R-cran-magrittr
  9. R : math/R
  10. gfortran12 : lang/gcc12
  11. as : devel/binutils
Runtime dependencies:
  1. R-cran-cmprsk>0 : science/R-cran-cmprsk
  2. R-cran-etm>0 : science/R-cran-etm
  3. R-cran-plyr>0 : devel/R-cran-plyr
  4. R-cran-dplyr>0 : math/R-cran-dplyr
  5. R-cran-numDeriv>0 : math/R-cran-numDeriv
  6. R-cran-data.table>0 : devel/R-cran-data.table
  7. R-cran-zoo>0 : math/R-cran-zoo
  8. R-cran-magrittr>0 : devel/R-cran-magrittr
  9. R : math/R
  10. gfortran12 : lang/gcc12
There are no ports dependent upon this port

Configuration Options:
Options name:
USES:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (22 items)
Collapse this list.
  1. http://camoruco.ing.uc.edu.ve/cran/src/contrib/
  2. http://camoruco.ing.uc.edu.ve/cran/src/contrib/Archive/Epi/
  3. http://cran.utstat.utoronto.ca/src/contrib/
  4. http://cran.utstat.utoronto.ca/src/contrib/Archive/Epi/
  5. https://cloud.r-project.org/src/contrib/
  6. https://cloud.r-project.org/src/contrib/Archive/Epi/
  7. https://cran.cnr.berkeley.edu/src/contrib/
  8. https://cran.cnr.berkeley.edu/src/contrib/Archive/Epi/
  9. https://cran.csiro.au/src/contrib/
  10. https://cran.csiro.au/src/contrib/Archive/Epi/
  11. https://cran.gis-lab.info/src/contrib/
  12. https://cran.gis-lab.info/src/contrib/Archive/Epi/
  13. https://cran.ism.ac.jp/src/contrib/
  14. https://cran.ism.ac.jp/src/contrib/Archive/Epi/
  15. https://cran.ma.imperial.ac.uk/src/contrib/
  16. https://cran.ma.imperial.ac.uk/src/contrib/Archive/Epi/
  17. https://mirror.las.iastate.edu/CRAN/src/contrib/
  18. https://mirror.las.iastate.edu/CRAN/src/contrib/Archive/Epi/
  19. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/
  20. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/Archive/Epi/
  21. https://stat.ethz.ch/CRAN/src/contrib/
  22. https://stat.ethz.ch/CRAN/src/contrib/Archive/Epi/
Collapse this list.

Number of commits found: 55

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.47
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.47
20 Jul 2022 14:22:51
commit hash:46196047a4df0f85aaee442799209fdaacf03361commit hash:46196047a4df0f85aaee442799209fdaacf03361commit hash:46196047a4df0f85aaee442799209fdaacf03361commit hash:46196047a4df0f85aaee442799209fdaacf03361 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.47
12 Jul 2022 02:10:02
commit hash:4aac06db33b09f4f375cacb0704f680363397c20commit hash:4aac06db33b09f4f375cacb0704f680363397c20commit hash:4aac06db33b09f4f375cacb0704f680363397c20commit hash:4aac06db33b09f4f375cacb0704f680363397c20 files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
science/R-cran-Epi: Update to 2.47
2.46
17 Apr 2022 06:22:10
commit hash:308aa02b1506de4fd7e56b91d6cdfeb1bae5e35bcommit hash:308aa02b1506de4fd7e56b91d6cdfeb1bae5e35bcommit hash:308aa02b1506de4fd7e56b91d6cdfeb1bae5e35bcommit hash:308aa02b1506de4fd7e56b91d6cdfeb1bae5e35b files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
science/R-cran-Epi: Update to 2.46
2.44
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.44
01 Mar 2021 09:47:55
Revision:566846Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.44
2.43
30 Jan 2021 04:53:09
Revision:563275Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.43
2.42
10 Nov 2020 11:37:03
Revision:554830Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.42
2.41
10 Aug 2020 08:08:07
Revision:544603Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.41
2.40_1
05 May 2020 16:07:54
Revision:534095Original commit files touched by this commit
jrm search for other commits by this committer
math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572
2.40
28 Nov 2019 00:12:46
Revision:518551Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.40
2.38
26 Sep 2019 10:50:24
Revision:512889Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.38
2.37_1
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
2.37
07 Jul 2019 12:34:59
Revision:506137Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.37
2.32_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
2.32
27 Aug 2018 02:22:54
Revision:478171Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.32
2.30
17 May 2018 06:30:11
Revision:470198Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.30
2.28
26 Apr 2018 09:32:54
Revision:468337Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.28
2.26
02 Apr 2018 09:54:34
Revision:466216Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.26
2.19_1
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
2.19
28 Aug 2017 11:50:57
Revision:448860Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.19
2.16_1
06 Jul 2017 03:09:36
Revision:445126Original commit files touched by this commit
tota search for other commits by this committer
- Add missing dependency

Reported by:	pkg-fallout
2.16
03 Jul 2017 06:01:18
Revision:444914Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.16
2.15
06 Jun 2017 08:12:50
Revision:442746Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.15
2.12
07 May 2017 07:39:46
Revision:440312Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.12
2.7
15 Oct 2016 04:49:02
Revision:424000Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.7
2.0
01 Apr 2016 14:25:18
Revision:412349Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
2.0
26 Jan 2016 01:48:17
Revision:407253Original commit files touched by this commit
tota search for other commits by this committer
- Update to 2.0
1.1.71
08 Nov 2015 06:46:59
Revision:401035Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.1.71
- Update WWW in pkg-descr
1.1.67
13 Jun 2015 06:04:57
Revision:389321Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.1.67
1.1.49_5
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
1.1.49_4
10 Mar 2014 20:55:22
Revision:347809Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
1.1.49_3
28 Dec 2013 10:28:41
Revision:337846Original commit files touched by this commit
dbn search for other commits by this committer
Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
1.1.49_3
27 Nov 2013 18:56:44
Revision:335044Original commit files touched by this commit
dbn search for other commits by this committer
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
1.1.49_3
13 Nov 2013 08:19:35
Revision:333659Original commit files touched by this commit
bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
1.1.49_2
26 Oct 2013 00:52:36
Revision:331644Original commit files touched by this commit
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.1.49_1
20 Sep 2013 22:48:31
Revision:327767Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
1.1.49_1
28 May 2013 15:15:06
Revision:319316Original commit files touched by this commit
bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
1.1.49
18 May 2013 22:32:21
Revision:318460Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.1.49
1.1.44_1
07 Mar 2013 04:21:35
Revision:313562Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.15.3, and adjust dependent ports
1.1.44
09 Feb 2013 01:30:14
Revision:311958Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.1.44
- Remove indefinite article from COMMENT
1.1.40_1
04 Jan 2013 17:51:39
Revision:309935Original commit files touched by this commit
bf search for other commits by this committer
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
1.1.40
06 Nov 2012 22:51:13
Revision:307105Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.1.40
- Convert to new Makefile header
- Trim WWW: line in pkg-descr

Feature safe:	yes
1.1.36
30 Jun 2012 03:31:07
Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.1.36
1.1.34_2
26 Jun 2012 23:57:00
Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports
1.1.34_1
04 May 2012 20:56:15
Original commit files touched by this commit
bf search for other commits by this committer
- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:    thierry, tota, wen
Approved by:    D. Rue (maintainer) [1], wen [2]
1.1.34
31 Mar 2012 05:51:31
Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.1.34

Feature safe:   yes
1.1.33_1
03 Mar 2012 16:59:36
Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.14.2, and adjust dependent ports
1.1.33
26 Jan 2012 11:34:06
Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.1.33
- Add LICENSE
1.1.24_3
18 Jan 2012 23:04:08
Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.14.1, and adjust dependent ports
1.1.24_2
27 Nov 2011 07:02:15
Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:    linimon (portmgr), thierry, tota, wen
Feature safe:   yes
1.1.24_1
15 Nov 2011 20:09:02
Original commit files touched by this commit
tota search for other commits by this committer
- Move PKGNAMEPREFIX defined in each R-cran- related ports Makefile
  to Mk/bsd.cran.mk

PR:             ports/162238
Submitted by:   tota (myself)
Approved by:    wen (maintainer of Mk/bsd.cran.mk and many related ports),
                David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
                  (maintainer of math/R-cran-RSvgDevice and math/R-cran-car),
                Dan Rue <drue_AT_therub_DOT_org>
                  (maintainer of math/R-cran-psych, timeout > 2 weeks)
Feature safe:   yes
1.1.24_1
11 Oct 2011 14:19:46
Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.13.2, and adjust dependent ports
1.1.24
17 Sep 2011 06:55:27
Original commit files touched by this commit
tota search for other commits by this committer
- Add a new port: science/R-cran-Epi

  Functions for demographic and epidemiological analysis in the Lexis
  diagram, i.e. register and cohort follow-up data, including interval
  censored data and representation of multistate data. Also some
  useful functions for tabulation and plotting. Contains some
  epidemiological datasets.

  WWW:  http://www.pubhealth.ku.dk/~bxc/Epi/

Number of commits found: 55