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Port details
R-cran-Epi Package for statistical analysis in epidemiology
2.38 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.32Version of this port present on the latest quarterly branch.
Maintainer: tota@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2011-09-17 07:00:53
Last Update: 2019-09-26 11:50:24
SVN Revision: 512889
License: GPLv2
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
  1. /usr/local/share/licenses/R-cran-Epi-2.38/catalog.mk
  2. /usr/local/share/licenses/R-cran-Epi-2.38/LICENSE
  3. /usr/local/share/licenses/R-cran-Epi-2.38/GPLv2
Collapse this list.
Dependency lines:
  • R-cran-Epi>0:science/R-cran-Epi
To install the port: cd /usr/ports/science/R-cran-Epi/ && make install clean
To add the package: pkg install R-cran-Epi
PKGNAME: R-cran-Epi
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. R-cran-cmprsk>0 : science/R-cran-cmprsk
  2. R-cran-etm>0 : science/R-cran-etm
  3. R-cran-plyr>0 : devel/R-cran-plyr
  4. R-cran-numDeriv>0 : math/R-cran-numDeriv
  5. R-cran-data.table>0 : devel/R-cran-data.table
  6. R-cran-zoo>0 : math/R-cran-zoo
  7. R : math/R
  8. gfortran9 : lang/gcc9
  9. as : devel/binutils
Runtime dependencies:
  1. R-cran-cmprsk>0 : science/R-cran-cmprsk
  2. R-cran-etm>0 : science/R-cran-etm
  3. R-cran-plyr>0 : devel/R-cran-plyr
  4. R-cran-numDeriv>0 : math/R-cran-numDeriv
  5. R-cran-data.table>0 : devel/R-cran-data.table
  6. R-cran-zoo>0 : math/R-cran-zoo
  7. R : math/R
  8. gfortran9 : lang/gcc9
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. http://camoruco.ing.uc.edu.ve/cran/src/contrib/
  2. http://camoruco.ing.uc.edu.ve/cran/src/contrib/Archive/Epi/
  3. http://cran.utstat.utoronto.ca/src/contrib/
  4. http://cran.utstat.utoronto.ca/src/contrib/Archive/Epi/
  5. https://cloud.r-project.org/src/contrib/
  6. https://cloud.r-project.org/src/contrib/Archive/Epi/
  7. https://cran.cnr.berkeley.edu/src/contrib/
  8. https://cran.cnr.berkeley.edu/src/contrib/Archive/Epi/
  9. https://cran.csiro.au/src/contrib/
  10. https://cran.csiro.au/src/contrib/Archive/Epi/
  11. https://cran.gis-lab.info/src/contrib/
  12. https://cran.gis-lab.info/src/contrib/Archive/Epi/
  13. https://cran.ism.ac.jp/src/contrib/
  14. https://cran.ism.ac.jp/src/contrib/Archive/Epi/
  15. https://cran.ma.imperial.ac.uk/src/contrib/
  16. https://cran.ma.imperial.ac.uk/src/contrib/Archive/Epi/
  17. https://mirror.las.iastate.edu/CRAN/src/contrib/
  18. https://mirror.las.iastate.edu/CRAN/src/contrib/Archive/Epi/
  19. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/
  20. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/Archive/Epi/
  21. https://stat.ethz.ch/CRAN/src/contrib/
  22. https://stat.ethz.ch/CRAN/src/contrib/Archive/Epi/

Number of commits found: 43

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
26 Sep 2019 10:50:24
Original commit files touched by this commit  2.38
Revision:512889
tota search for other commits by this committer
- Update to 2.38
26 Jul 2019 20:46:57
Original commit files touched by this commit  2.37_1
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
07 Jul 2019 12:34:59
Original commit files touched by this commit  2.37
Revision:506137
tota search for other commits by this committer
- Update to 2.37
12 Dec 2018 01:35:36
Original commit files touched by this commit  2.32_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
27 Aug 2018 02:22:54
Original commit files touched by this commit  2.32
Revision:478171
tota search for other commits by this committer
- Update to 2.32
17 May 2018 06:30:11
Original commit files touched by this commit  2.30
Revision:470198
tota search for other commits by this committer
- Update to 2.30
26 Apr 2018 09:32:54
Original commit files touched by this commit  2.28
Revision:468337
tota search for other commits by this committer
- Update to 2.28
02 Apr 2018 09:54:34
Original commit files touched by this commit  2.26
Revision:466216
tota search for other commits by this committer
- Update to 2.26
10 Mar 2018 17:46:06
Original commit files touched by this commit  2.19_1
Revision:464084
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
28 Aug 2017 11:50:57
Original commit files touched by this commit  2.19
Revision:448860
tota search for other commits by this committer
- Update to 2.19
06 Jul 2017 03:09:36
Original commit files touched by this commit  2.16_1
Revision:445126
tota search for other commits by this committer
- Add missing dependency

Reported by:	pkg-fallout
03 Jul 2017 06:01:18
Original commit files touched by this commit  2.16
Revision:444914
tota search for other commits by this committer
- Update to 2.16
06 Jun 2017 08:12:50
Original commit files touched by this commit  2.15
Revision:442746
tota search for other commits by this committer
- Update to 2.15
07 May 2017 07:39:46
Original commit files touched by this commit  2.12
Revision:440312
tota search for other commits by this committer
- Update to 2.12
15 Oct 2016 04:49:02
Original commit files touched by this commit  2.7
Revision:424000
tota search for other commits by this committer
- Update to 2.7
01 Apr 2016 14:25:18
Original commit files touched by this commit  2.0
Revision:412349
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
26 Jan 2016 01:48:17
Original commit files touched by this commit  2.0
Revision:407253
tota search for other commits by this committer
- Update to 2.0
08 Nov 2015 06:46:59
Original commit files touched by this commit  1.1.71
Revision:401035
tota search for other commits by this committer
- Update to 1.1.71
- Update WWW in pkg-descr
13 Jun 2015 06:04:57
Original commit files touched by this commit  1.1.67
Revision:389321
tota search for other commits by this committer
- Update to 1.1.67
10 Sep 2014 20:50:37
Original commit files touched by this commit  1.1.49_5
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
10 Mar 2014 20:55:22
Original commit files touched by this commit  1.1.49_4
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
28 Dec 2013 10:28:41
Original commit files touched by this commit  1.1.49_3
Revision:337846
dbn search for other commits by this committer
Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
27 Nov 2013 18:56:44
Original commit files touched by this commit  1.1.49_3
Revision:335044
dbn search for other commits by this committer
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
13 Nov 2013 08:19:35
Original commit files touched by this commit  1.1.49_3
Revision:333659
bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
26 Oct 2013 00:52:36
Original commit files touched by this commit  1.1.49_2
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 22:48:31
Original commit files touched by this commit  1.1.49_1
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
28 May 2013 15:15:06
Original commit files touched by this commit  1.1.49_1
Revision:319316
bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
18 May 2013 22:32:21
Original commit files touched by this commit  1.1.49
Revision:318460
tota search for other commits by this committer
- Update to 1.1.49
07 Mar 2013 04:21:35
Original commit files touched by this commit  1.1.44_1
Revision:313562
bf search for other commits by this committer
update math/R to 2.15.3, and adjust dependent ports
09 Feb 2013 01:30:14
Original commit files touched by this commit  1.1.44
Revision:311958
tota search for other commits by this committer
- Update to 1.1.44
- Remove indefinite article from COMMENT
04 Jan 2013 17:51:39
Original commit files touched by this commit  1.1.40_1
Revision:309935
bf search for other commits by this committer
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
06 Nov 2012 22:51:13
Original commit files touched by this commit  1.1.40
Revision:307105
tota search for other commits by this committer
- Update to 1.1.40
- Convert to new Makefile header
- Trim WWW: line in pkg-descr

Feature safe:	yes
30 Jun 2012 03:31:07
Original commit files touched by this commit  1.1.36

tota search for other commits by this committer
- Update to 1.1.36
26 Jun 2012 23:57:00
Original commit files touched by this commit  1.1.34_2

bf search for other commits by this committer
update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports
04 May 2012 20:56:15
Original commit files touched by this commit  1.1.34_1

bf search for other commits by this committer
- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:    thierry, tota, wen
Approved by:    D. Rue (maintainer) [1], wen [2]
31 Mar 2012 05:51:31
Original commit files touched by this commit  1.1.34

tota search for other commits by this committer
- Update to 1.1.34

Feature safe:   yes
03 Mar 2012 16:59:36
Original commit files touched by this commit  1.1.33_1

bf search for other commits by this committer
update math/R to 2.14.2, and adjust dependent ports
26 Jan 2012 11:34:06
Original commit files touched by this commit  1.1.33

tota search for other commits by this committer
- Update to 1.1.33
- Add LICENSE
18 Jan 2012 23:04:08
Original commit files touched by this commit  1.1.24_3

bf search for other commits by this committer
update math/R to 2.14.1, and adjust dependent ports
27 Nov 2011 07:02:15
Original commit files touched by this commit  1.1.24_2

bf search for other commits by this committer
update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:    linimon (portmgr), thierry, tota, wen
Feature safe:   yes
15 Nov 2011 20:09:02
Original commit files touched by this commit  1.1.24_1

tota search for other commits by this committer
- Move PKGNAMEPREFIX defined in each R-cran- related ports Makefile
  to Mk/bsd.cran.mk

PR:             ports/162238
Submitted by:   tota (myself)
Approved by:    wen (maintainer of Mk/bsd.cran.mk and many related ports),
                David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
                  (maintainer of math/R-cran-RSvgDevice and math/R-cran-car),
                Dan Rue <drue_AT_therub_DOT_org>
                  (maintainer of math/R-cran-psych, timeout > 2 weeks)
Feature safe:   yes
11 Oct 2011 14:19:46
Original commit files touched by this commit  1.1.24_1

bf search for other commits by this committer
update math/R to 2.13.2, and adjust dependent ports
17 Sep 2011 06:55:27
Original commit files touched by this commit  1.1.24

tota search for other commits by this committer
- Add a new port: science/R-cran-Epi

  Functions for demographic and epidemiological analysis in the Lexis
  diagram, i.e. register and cohort follow-up data, including interval
  censored data and representation of multistate data. Also some
  useful functions for tabulation and plotting. Contains some
  epidemiological datasets.

  WWW:  http://www.pubhealth.ku.dk/~bxc/Epi/

Number of commits found: 43

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