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Port details
afni Advanced Functional Neuro Imaging
25.2.09 science on this many watch lists=3 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 25.1.15Version of this port present on the latest quarterly branch.
Maintainer: fernape@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-01-25 17:37:44
Last Update: 2025-08-25 18:14:45
Commit Hash: b36276d
People watching this port, also watch:: hp48xgcc, hte, disco, zsnes, stunnel
Also Listed In: biology graphics perl5 python
License: GPLv2
WWW:
https://afni.nimh.nih.gov/afni/
Description:
AFNI (Analysis of Functional Neuro Imaging) is a tool for analyzing 3-dimensional images, especially functional MRI images used in brain mapping research.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (2064 items)
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  1. /usr/local/share/licenses/afni-25.2.09/catalog.mk
  2. /usr/local/share/licenses/afni-25.2.09/LICENSE
  3. /usr/local/share/licenses/afni-25.2.09/GPLv2
  4. bin/1dApar2mat
  5. bin/1dAstrip
  6. bin/1dBandpass
  7. bin/1dBport
  8. bin/1dCorrelate
  9. bin/1dDW_Grad_o_Mat++
  10. bin/1dFlagMotion
  11. bin/1dGC.R
  12. bin/1dMarry
  13. bin/1dNLfit
  14. bin/1dRplot
  15. bin/1dRplot.R
  16. bin/1dSEM
  17. bin/1dSEMr.R
  18. bin/1dSVAR.R
  19. bin/1dTsort
  20. bin/1dUpsample
  21. bin/1d_tool.py
  22. bin/1dcat
  23. bin/1ddot
  24. bin/1deval
  25. bin/1dfft
  26. bin/1dgenARMA11
  27. bin/1dgrayplot
  28. bin/1dmatcalc
  29. bin/1dnorm
  30. bin/1dplot
  31. bin/1dplot.py
  32. bin/1dsound
  33. bin/1dsum
  34. bin/1dsvd
  35. bin/1dtranspose
  36. bin/24swap
  37. bin/2dImReg
  38. bin/2dcat
  39. bin/2perm
  40. bin/2swap
  41. bin/3dABoverlap
  42. bin/3dAFNIto3D
  43. bin/3dAFNItoANALYZE
  44. bin/3dAFNItoNIFTI
  45. bin/3dAFNItoNIML
  46. bin/3dAFNItoRaw
  47. bin/3dANOVA
  48. bin/3dANOVA2
  49. bin/3dANOVA3
  50. bin/3dAcost
  51. bin/3dAllineate
  52. bin/3dAmpToRSFC
  53. bin/3dAnhist
  54. bin/3dAttribute
  55. bin/3dAutoTcorrelate
  56. bin/3dAutobox
  57. bin/3dAutomask
  58. bin/3dBRAIN_VOYAGERtoAFNI
  59. bin/3dBallMatch
  60. bin/3dBandpass
  61. bin/3dBlurInMask
  62. bin/3dBlurToFWHM
  63. bin/3dBrainSync
  64. bin/3dBrickStat
  65. bin/3dCM
  66. bin/3dCRUISEtoAFNI
  67. bin/3dClipLevel
  68. bin/3dClustCount
  69. bin/3dClustSim
  70. bin/3dClusterize
  71. bin/3dCompareAffine
  72. bin/3dConformist
  73. bin/3dConvolve
  74. bin/3dDFT
  75. bin/3dDTeig
  76. bin/3dDTtoDWI
  77. bin/3dDTtoNoisyDWI
  78. bin/3dDWItoDT
  79. bin/3dDWUncert
  80. bin/3dDeconvolve
  81. bin/3dDegreeCentrality
  82. bin/3dDepthMap
  83. bin/3dDespike
  84. bin/3dDetrend
  85. bin/3dDiff
  86. bin/3dECM
  87. bin/3dEdu_01_scale
  88. bin/3dEigsToDT
  89. bin/3dEmpty
  90. bin/3dEntropy
  91. bin/3dErrtsCormat
  92. bin/3dExchange
  93. bin/3dExtractGroupInCorr
  94. bin/3dExtrema
  95. bin/3dFDR
  96. bin/3dFFT
  97. bin/3dFWHMx
  98. bin/3dFriedman
  99. bin/3dGC.R
  100. bin/3dGLMM
  101. bin/3dGLMM.R
  102. bin/3dGenFeatureDist
  103. bin/3dGenPriors
  104. bin/3dGetrow
  105. bin/3dGrayplot
  106. bin/3dGroupInCorr
  107. bin/3dHist
  108. bin/3dICA.R
  109. bin/3dICC
  110. bin/3dICC.R
  111. bin/3dISC
  112. bin/3dISC.R
  113. bin/3dIntracranial
  114. bin/3dInvFMRI
  115. bin/3dKS.R
  116. bin/3dKruskalWallis
  117. bin/3dLFCD
  118. bin/3dLME
  119. bin/3dLME.R
  120. bin/3dLME2
  121. bin/3dLME2.R
  122. bin/3dLMEr
  123. bin/3dLMEr.R
  124. bin/3dLRflip
  125. bin/3dLSS
  126. bin/3dLocalACF
  127. bin/3dLocalBistat
  128. bin/3dLocalHistog
  129. bin/3dLocalPV
  130. bin/3dLocalSVD
  131. bin/3dLocalUnifize
  132. bin/3dLocalstat
  133. bin/3dLombScargle
  134. bin/3dMEMA
  135. bin/3dMEMA.R
  136. bin/3dMEPFM
  137. bin/3dMEPFM.R
  138. bin/3dMSE
  139. bin/3dMSS
  140. bin/3dMSS.R
  141. bin/3dMVM
  142. bin/3dMVM.R
  143. bin/3dMVM_validator
  144. bin/3dMannWhitney
  145. bin/3dMaskToASCII
  146. bin/3dMatch
  147. bin/3dMean
  148. bin/3dMedianFilter
  149. bin/3dMultiThresh
  150. bin/3dNLfim
  151. bin/3dNetCorr
  152. bin/3dNormalityTest
  153. bin/3dNotes
  154. bin/3dNwarpAdjust
  155. bin/3dNwarpApply
  156. bin/3dNwarpCalc
  157. bin/3dNwarpCat
  158. bin/3dNwarpFuncs
  159. bin/3dNwarpXYZ
  160. bin/3dOverlap
  161. bin/3dPAR2AFNI.pl
  162. bin/3dPFM
  163. bin/3dPFM.R
  164. bin/3dPVmap
  165. bin/3dPeriodogram
  166. bin/3dPolyfit
  167. bin/3dPval
  168. bin/3dQwarp
  169. bin/3dREMLfit
  170. bin/3dROIMaker
  171. bin/3dROIstats
  172. bin/3dRSFC
  173. bin/3dRank
  174. bin/3dRankizer
  175. bin/3dReHo
  176. bin/3dRegAna
  177. bin/3dRetinoPhase
  178. bin/3dRowFillin
  179. bin/3dRprogDemo
  180. bin/3dRprogDemo.R
  181. bin/3dSeg
  182. bin/3dSetupGroupInCorr
  183. bin/3dSharpen
  184. bin/3dSignatures
  185. bin/3dSignatures.R
  186. bin/3dSkullStrip
  187. bin/3dSliceNDice
  188. bin/3dSpaceTimeCorr
  189. bin/3dSpatNorm
  190. bin/3dStatClust
  191. bin/3dSurf2Vol
  192. bin/3dSurfMask
  193. bin/3dSynthesize
  194. bin/3dTORTOISEtoHere
  195. bin/3dTRfix
  196. bin/3dTSgen
  197. bin/3dTagalign
  198. bin/3dTcat
  199. bin/3dTcorr1D
  200. bin/3dTcorrMap
  201. bin/3dTcorrelate
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  207. bin/3dToyProg
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  210. bin/3dTrackID
  211. bin/3dTshift
  212. bin/3dTsmooth
  213. bin/3dTsort
  214. bin/3dTsplit4D
  215. bin/3dTstat
  216. bin/3dTto1D
  217. bin/3dTwotoComplex
  218. bin/3dUndump
  219. bin/3dUnifize
  220. bin/3dUpsample
  221. bin/3dVecRGB_to_HSL
  222. bin/3dVol2Surf
  223. bin/3dWarp
  224. bin/3dWarpDrive
  225. bin/3dWilcoxon
  226. bin/3dWinsor
  227. bin/3dXClustSim
  228. bin/3dXYZcat
  229. bin/3dZcat
  230. bin/3dZcutup
  231. bin/3dZeropad
  232. bin/3dZipperZapper
  233. bin/3dZregrid
  234. bin/3danisosmooth
  235. bin/3daxialize
  236. bin/3dbucket
  237. bin/3dcalc
  238. bin/3dclust
  239. bin/3dcopy
  240. bin/3ddelay
  241. bin/3ddot
  242. bin/3ddot_beta
  243. bin/3dedge3
  244. bin/3dedgedog
  245. bin/3dfim+
  246. bin/3dfractionize
  247. bin/3dhistog
  248. bin/3dinfill
  249. bin/3dinfo
  250. bin/3dkmeans
  251. bin/3dmaskSVD
  252. bin/3dmask_tool
  253. bin/3dmaskave
  254. bin/3dmaskdump
  255. bin/3dmatcalc
  256. bin/3dmatmult
  257. bin/3dmaxdisp
  258. bin/3dmaxima
  259. bin/3dmerge
  260. bin/3dnewid
  261. bin/3dnvals
  262. bin/3dpc
  263. bin/3drefit
  264. bin/3drename
  265. bin/3dresample
  266. bin/3dretroicor
  267. bin/3drotate
  268. bin/3dsvm
  269. bin/3dsvm_linpredict
  270. bin/3dtoXdataset
  271. bin/3dttest++
  272. bin/3dvolreg
  273. bin/4swap
  274. bin/@1dDiffMag
  275. bin/@2dwarper
  276. bin/@2dwarper.Allin
  277. bin/@4Daverage
  278. bin/@ANATICOR
  279. bin/@AddEdge
  280. bin/@AfniEnv
  281. bin/@AfniOrient2RAImap
  282. bin/@AfniOrientSign
  283. bin/@Align_Centers
  284. bin/@Atlasize
  285. bin/@Center_Distance
  286. bin/@CheckForAfniDset
  287. bin/@ClustExp_CatLab
  288. bin/@ClustExp_run_shiny
  289. bin/@CommandGlobb
  290. bin/@DO.examples
  291. bin/@DeblankFileNames
  292. bin/@DiceMetric
  293. bin/@DriveAfni
  294. bin/@DriveSuma
  295. bin/@ElectroGrid
  296. bin/@ExamineGenFeatDists
  297. bin/@FS_roi_label
  298. bin/@FSlabel2dset
  299. bin/@FindAfniDsetPath
  300. bin/@FromRAI
  301. bin/@FullPath
  302. bin/@GetAfniBin
  303. bin/@GetAfniDims
  304. bin/@GetAfniID
  305. bin/@GetAfniOrient
  306. bin/@GetAfniPrefix
  307. bin/@GetAfniRes
  308. bin/@GetAfniView
  309. bin/@GradFlipTest
  310. bin/@Install_3dPFM_Demo
  311. bin/@Install_APMULTI_Demo1_rest
  312. bin/@Install_APMULTI_Demo2_realtime
  313. bin/@Install_AfniRetinoDemo
  314. bin/@Install_ClustScat_Demo
  315. bin/@Install_D99_macaque
  316. bin/@Install_DBSproc
  317. bin/@Install_FATCAT_DEMO
  318. bin/@Install_FATCAT_DEMO2
  319. bin/@Install_FATMVM_DEMO
  320. bin/@Install_IBT_DATASETS
  321. bin/@Install_InstaCorr_Demo
  322. bin/@Install_MACAQUE_DEMO
  323. bin/@Install_MACAQUE_DEMO_REST
  324. bin/@Install_MBM_Marmoset
  325. bin/@Install_MEICA_Demo
  326. bin/@Install_NIH_Marmoset
  327. bin/@Install_NMT
  328. bin/@Install_RAT_DEMO_REST
  329. bin/@Install_RSFMRI_Motion_Group_Demo
  330. bin/@Install_SAM_marmoset
  331. bin/@Install_SURFLAYERS_DEMO1
  332. bin/@Install_TSrestMovieDemo
  333. bin/@IsoMasks
  334. bin/@MakeLabelTable
  335. bin/@NoExt
  336. bin/@NoPound
  337. bin/@NoisySkullStrip
  338. bin/@Purify_1D
  339. bin/@Quiet_Talkers
  340. bin/@ROI_Corr_Mat
  341. bin/@ROI_decluster
  342. bin/@ROI_modal_grow
  343. bin/@R_funclist
  344. bin/@RenamePanga
  345. bin/@Reorder
  346. bin/@RetinoProc
  347. bin/@SSwarper
  348. bin/@SUMA_AlignToExperiment
  349. bin/@SUMA_FSvolToBRIK
  350. bin/@SUMA_Make_Spec_Caret
  351. bin/@SUMA_Make_Spec_FS
  352. bin/@SUMA_Make_Spec_SF
  353. bin/@SUMA_renumber_FS
  354. bin/@ScaleVolume
  355. bin/@ScriptCheck
  356. bin/@Shift_Volume
  357. bin/@ShowDynamicRange
  358. bin/@SkullStrip_TouchUp
  359. bin/@Spharm.examples
  360. bin/@SurfSmooth.HEAT_07.examples
  361. bin/@T1scale
  362. bin/@TimeDiff
  363. bin/@ToRAI
  364. bin/@VolCenter
  365. bin/@afni.run.me
  366. bin/@afni_R_package_install
  367. bin/@afni_refacer_make_master
  368. bin/@afni_refacer_make_master_addendum
  369. bin/@afni_refacer_make_onebigA12
  370. bin/@afni_refacer_run
  371. bin/@align_partial_oblique
  372. bin/@animal_warper
  373. bin/@auto_tlrc
  374. bin/@build_afni_Xlib
  375. bin/@chauffeur_afni
  376. bin/@clean_help_dir
  377. bin/@clip_volume
  378. bin/@compute_OC_weights
  379. bin/@compute_gcor
  380. bin/@demo_prompt
  381. bin/@diff.files
  382. bin/@diff.tree
  383. bin/@djunct_4d_imager
  384. bin/@djunct_4d_slices_to_3d_vol
  385. bin/@djunct_anonymize
  386. bin/@djunct_dwi_selector.tcsh
  387. bin/@djunct_edgy_align_check
  388. bin/@djunct_glue_imgs_vert
  389. bin/@djunct_json_value.py
  390. bin/@djunct_modal_smoothing_with_rep
  391. bin/@djunct_montage_coordinator
  392. bin/@djunct_overlap_check
  393. bin/@djunct_slice_space
  394. bin/@djunct_ssw_intermed_edge_imgs
  395. bin/@djunct_vol_3slice_select
  396. bin/@escape-
  397. bin/@extract_meica_ortvec
  398. bin/@fast_roi
  399. bin/@fat_tract_colorize
  400. bin/@fix_FSsphere
  401. bin/@float_fix
  402. bin/@get.afni.version
  403. bin/@global_parse
  404. bin/@grayplot
  405. bin/@help.AFNI
  406. bin/@isOblique
  407. bin/@make_plug_diff
  408. bin/@measure_bb_thick
  409. bin/@measure_erosion_thick
  410. bin/@measure_in2out
  411. bin/@move.to.series.dirs
  412. bin/@np
  413. bin/@parse_afni_name
  414. bin/@parse_name
  415. bin/@radial_correlate
  416. bin/@simulate_motion
  417. bin/@snapshot_volreg
  418. bin/@statauxcode
  419. bin/@suma_acknowledge
  420. bin/@suma_reprefixize_spec
  421. bin/@surf_to_vol_spackle
  422. bin/@thickness_master
  423. bin/@toMNI_Awarp
  424. bin/@toMNI_Qwarpar
  425. bin/@update.afni.binaries
  426. bin/@xyz_to_ijk
  427. bin/AFNI_Batch_R
  428. bin/AFNI_atlas_spaces.niml
  429. bin/AFNI_version.txt
  430. bin/AFNIio.R
  431. bin/AFNIplot.R
  432. bin/AnalyzeTrace
  433. bin/BayesianGroupAna.R
  434. bin/BayesianGroupAna.py
  435. bin/BrainSkin
  436. bin/CMakeLists.txt
  437. bin/ClustExp_HistTable.py
  438. bin/ClustExp_StatParse.py
  439. bin/CompareSurfaces
  440. bin/ConvertDset
  441. bin/ConvertSurface
  442. bin/ConvexHull
  443. bin/CreateIcosahedron
  444. bin/DTIStudioFibertoSegments
  445. bin/Dimon
  446. bin/DriveSuma
  447. bin/ExamineXmat
  448. bin/ExamineXmat.R
  449. bin/FATCAT_matplot
  450. bin/FIRdesign
  451. bin/FSread_annot
  452. bin/FiraCode-Bold.woff2
  453. bin/FiraCode-Regular.woff2
  454. bin/GLTsymtest
  455. bin/HalloSuma
  456. bin/InstaTract
  457. bin/IsoSurface
  458. bin/Level2.R
  459. bin/MBA
  460. bin/MBA.R
  461. bin/MakeColorMap
  462. bin/MapIcosahedron
  463. bin/PTA
  464. bin/PTA.R
  465. bin/ParseName
  466. bin/RBA
  467. bin/RBA.R
  468. bin/ROI2dataset
  469. bin/ROIgrow
  470. bin/RSFgen
  471. bin/RetroTS.py
  472. bin/SUMA_glxdino
  473. bin/SUMA_paperplane
  474. bin/SUMA_pixmap2eps
  475. bin/SampBias
  476. bin/ScaleToMap
  477. bin/Signatures.R
  478. bin/SpharmDeco
  479. bin/SpharmReco
  480. bin/Surf2VolCoord
  481. bin/SurfClust
  482. bin/SurfDist
  483. bin/SurfDsetInfo
  484. bin/SurfExtrema
  485. bin/SurfFWHM
  486. bin/SurfInfo
  487. bin/SurfLayers
  488. bin/SurfLocalstat
  489. bin/SurfMeasures
  490. bin/SurfPatch
  491. bin/SurfQual
  492. bin/SurfRetinoMap
  493. bin/SurfSmooth
  494. bin/SurfToSurf
  495. bin/SurfaceMetrics
  496. bin/TRR
  497. bin/TRR.R
  498. bin/Vecwarp
  499. bin/Xphace
  500. bin/abids_json_info.py
  501. bin/abids_json_tool.py
  502. bin/abids_tool.py
  503. bin/adjunct_apqc_tsnr_general
  504. bin/adjunct_atlas_points_to_labeltable
  505. bin/adjunct_aw_tableize_roi_info.py
  506. bin/adjunct_calc_mont_dims.py
  507. bin/adjunct_cbar_out
  508. bin/adjunct_combine_str.py
  509. bin/adjunct_deob_around_origin
  510. bin/adjunct_is_label.py
  511. bin/adjunct_make_script_and_rst.py
  512. bin/adjunct_middle_pair_mask
  513. bin/adjunct_select_str.py
  514. bin/adjunct_simplify_cost.py
  515. bin/adjunct_suma_fs_mask_and_qc
  516. bin/adjunct_suma_fs_roi_info
  517. bin/adjunct_tort_plot_dp_align
  518. bin/adjunct_tort_read_dp_align.py
  519. bin/adwarp
  520. bin/afni
  521. bin/afni_check_omp
  522. bin/afni_fs_aparc+aseg_2000.txt
  523. bin/afni_fs_aparc+aseg_2009.txt
  524. bin/afni_history
  525. bin/afni_open
  526. bin/afni_proc.py
  527. bin/afni_python_wrapper.py
  528. bin/afni_run_R
  529. bin/afni_seeds_per_space.txt
  530. bin/afni_skeleton.py
  531. bin/afni_system_check.py
  532. bin/afni_vcheck
  533. bin/afni_vlines_run_text.txt
  534. bin/afnisumafatcat_logo_128sq.png
  535. bin/afnisumafatcat_logo_905sq.png
  536. bin/afnisumagui_logo_128sq.jpg
  537. bin/afnisumagui_logo_128sq.png
  538. bin/afnisumagui_logo_905sq.jpg
  539. bin/afnisumagui_logo_905sq.png
  540. bin/aiv
  541. bin/align_epi_anat.py
  542. bin/ap_run_simple_rest.tcsh
  543. bin/ap_run_simple_rest_me.tcsh
  544. bin/apqc_logo_help.svg
  545. bin/apqc_logo_main.svg
  546. bin/apqc_make_html.py
  547. bin/apqc_make_tcsh.py
  548. bin/apsearch
  549. bin/auto_warp.py
  550. bin/bayes_view
  551. bin/build_afni.py
  552. bin/byteorder
  553. bin/cat_matvec
  554. bin/ccalc
  555. bin/chauffeur_map_rois
  556. bin/cifti_tool
  557. bin/colorbar_tool.py
  558. bin/column_cat
  559. bin/compute_ROI_stats.tcsh
  560. bin/convert_cdiflist_to_grads.py
  561. bin/count
  562. bin/count_afni
  563. bin/dcm2niix_afni
  564. bin/demo.fixed.niml.do
  565. bin/demo.mobile.niml.do
  566. bin/desphinxify
  567. bin/dicom_hdr
  568. bin/dicom_hinfo
  569. bin/dicom_to_raw
  570. bin/dsetstat2p
  571. bin/eg_main_chrono.py
  572. bin/epi_b0_correct.py
  573. bin/fat_mat2d_plot.py
  574. bin/fat_mat_sel.py
  575. bin/fat_mat_tableize.py
  576. bin/fat_mvm_gridconv.py
  577. bin/fat_mvm_prep.py
  578. bin/fat_mvm_scripter.py
  579. bin/fat_proc_align_anat_pair
  580. bin/fat_proc_axialize_anat
  581. bin/fat_proc_connec_vis
  582. bin/fat_proc_convert_dcm_anat
  583. bin/fat_proc_convert_dcm_dwis
  584. bin/fat_proc_decmap
  585. bin/fat_proc_dwi_to_dt
  586. bin/fat_proc_filter_dwis
  587. bin/fat_proc_imit2w_from_t1w
  588. bin/fat_proc_map_to_dti
  589. bin/fat_proc_select_vols
  590. bin/fat_roi_row.py
  591. bin/fatcat_logo_128sq.jpg
  592. bin/fatcat_logo_128sq.png
  593. bin/fatcat_logo_orig1200sq.png
  594. bin/fdrval
  595. bin/fftest
  596. bin/file_tool
  597. bin/fim2
  598. bin/find_variance_lines.tcsh
  599. bin/float_scan
  600. bin/from3d
  601. bin/gen_cluster_table
  602. bin/gen_epi_review.py
  603. bin/gen_group_command.py
  604. bin/gen_ss_review_scripts.py
  605. bin/gen_ss_review_table.py
  606. bin/get_afni_model_PRF
  607. bin/get_afni_model_PRF_6
  608. bin/get_afni_model_PRF_6_BAD
  609. bin/get_afni_model_PRF_DN
  610. bin/gifti_tool
  611. bin/gtkyd_check.py
  612. bin/help_format
  613. bin/im2niml
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  1772. share/afni/meica.libs/mdp/nodes/classifier_nodes.py
  1773. share/afni/meica.libs/mdp/nodes/convolution_nodes.py
  1774. share/afni/meica.libs/mdp/nodes/em_nodes.py
  1775. share/afni/meica.libs/mdp/nodes/expansion_nodes.py
  1776. share/afni/meica.libs/mdp/nodes/fda_nodes.py
  1777. share/afni/meica.libs/mdp/nodes/ica_nodes.py
  1778. share/afni/meica.libs/mdp/nodes/ica_nodes.py~
  1779. share/afni/meica.libs/mdp/nodes/ica_nodes_old.py
  1780. share/afni/meica.libs/mdp/nodes/isfa_nodes.py
  1781. share/afni/meica.libs/mdp/nodes/jade.py
  1782. share/afni/meica.libs/mdp/nodes/libsvm_classifier.py
  1783. share/afni/meica.libs/mdp/nodes/lle_nodes.py
  1784. share/afni/meica.libs/mdp/nodes/misc_nodes.py
  1785. share/afni/meica.libs/mdp/nodes/neural_gas_nodes.py
  1786. share/afni/meica.libs/mdp/nodes/nipals.py
  1787. share/afni/meica.libs/mdp/nodes/pca_nodes.py
  1788. share/afni/meica.libs/mdp/nodes/rbm_nodes.py
  1789. share/afni/meica.libs/mdp/nodes/regression_nodes.py
  1790. share/afni/meica.libs/mdp/nodes/scikits_nodes.py
  1791. share/afni/meica.libs/mdp/nodes/sfa_nodes.py
  1792. share/afni/meica.libs/mdp/nodes/shogun_svm_classifier.py
  1793. share/afni/meica.libs/mdp/nodes/svm_classifiers.py
  1794. share/afni/meica.libs/mdp/nodes/xsfa_nodes.py
  1795. share/afni/meica.libs/mdp/parallel/__init__.py
  1796. share/afni/meica.libs/mdp/parallel/parallelclassifiers.py
  1797. share/afni/meica.libs/mdp/parallel/parallelflows.py
  1798. share/afni/meica.libs/mdp/parallel/parallelhinet.py
  1799. share/afni/meica.libs/mdp/parallel/parallelnodes.py
  1800. share/afni/meica.libs/mdp/parallel/pp_slave_script.py
  1801. share/afni/meica.libs/mdp/parallel/pp_slave_wrapper.py
  1802. share/afni/meica.libs/mdp/parallel/pp_support.py
  1803. share/afni/meica.libs/mdp/parallel/process_schedule.py
  1804. share/afni/meica.libs/mdp/parallel/scheduling.py
  1805. share/afni/meica.libs/mdp/parallel/thread_schedule.py
  1806. share/afni/meica.libs/mdp/repo_revision.py
  1807. share/afni/meica.libs/mdp/signal_node.py
  1808. share/afni/meica.libs/mdp/test/__init__.py
  1809. share/afni/meica.libs/mdp/test/_tools.py
  1810. share/afni/meica.libs/mdp/test/benchmark_mdp.py
  1811. share/afni/meica.libs/mdp/test/conftest.py
  1812. share/afni/meica.libs/mdp/test/ide_run.py
  1813. share/afni/meica.libs/mdp/test/run_tests.py
  1814. share/afni/meica.libs/mdp/test/test_AdaptiveCutoffNode.py
  1815. share/afni/meica.libs/mdp/test/test_Convolution2DNode.py
  1816. share/afni/meica.libs/mdp/test/test_CutoffNode.py
  1817. share/afni/meica.libs/mdp/test/test_EtaComputerNode.py
  1818. share/afni/meica.libs/mdp/test/test_FANode.py
  1819. share/afni/meica.libs/mdp/test/test_FDANode.py
  1820. share/afni/meica.libs/mdp/test/test_GaussianClassifier.py
  1821. share/afni/meica.libs/mdp/test/test_GeneralExpansionNode.py
  1822. share/afni/meica.libs/mdp/test/test_GrowingNeuralGasNode.py
  1823. share/afni/meica.libs/mdp/test/test_HistogramNode.py
  1824. share/afni/meica.libs/mdp/test/test_HitParadeNode.py
  1825. share/afni/meica.libs/mdp/test/test_ICANode.py
  1826. share/afni/meica.libs/mdp/test/test_ISFANode.py
  1827. share/afni/meica.libs/mdp/test/test_KNNClassifier.py
  1828. share/afni/meica.libs/mdp/test/test_LinearRegressionNode.py
  1829. share/afni/meica.libs/mdp/test/test_NearestMeanClassifier.py
  1830. share/afni/meica.libs/mdp/test/test_NeuralGasNode.py
  1831. share/afni/meica.libs/mdp/test/test_NoiseNode.py
  1832. share/afni/meica.libs/mdp/test/test_PCANode.py
  1833. share/afni/meica.libs/mdp/test/test_PolynomialExpansionNode.py
  1834. share/afni/meica.libs/mdp/test/test_PreseverDimNode.py
  1835. share/afni/meica.libs/mdp/test/test_RBFExpansionNode.py
  1836. share/afni/meica.libs/mdp/test/test_RBM.py
  1837. share/afni/meica.libs/mdp/test/test_SFA2Node.py
  1838. share/afni/meica.libs/mdp/test/test_SFANode.py
  1839. share/afni/meica.libs/mdp/test/test_TimeDelayNodes.py
  1840. share/afni/meica.libs/mdp/test/test_TimeFrameNode.py
  1841. share/afni/meica.libs/mdp/test/test_VariadicCumulator.py
  1842. share/afni/meica.libs/mdp/test/test_WhiteningNode.py
  1843. share/afni/meica.libs/mdp/test/test_caching.py
  1844. share/afni/meica.libs/mdp/test/test_classifier.py
  1845. share/afni/meica.libs/mdp/test/test_config.py
  1846. share/afni/meica.libs/mdp/test/test_contrib.py
  1847. share/afni/meica.libs/mdp/test/test_copying.py
  1848. share/afni/meica.libs/mdp/test/test_extension.py
  1849. share/afni/meica.libs/mdp/test/test_fastica.py
  1850. share/afni/meica.libs/mdp/test/test_flows.py
  1851. share/afni/meica.libs/mdp/test/test_graph.py
  1852. share/afni/meica.libs/mdp/test/test_hinet.py
  1853. share/afni/meica.libs/mdp/test/test_hinet_generic.py
  1854. share/afni/meica.libs/mdp/test/test_metaclass_and_extensions.py
  1855. share/afni/meica.libs/mdp/test/test_namespace_fixups.py
  1856. share/afni/meica.libs/mdp/test/test_node_covariance.py
  1857. share/afni/meica.libs/mdp/test/test_node_metaclass.py
  1858. share/afni/meica.libs/mdp/test/test_node_operations.py
  1859. share/afni/meica.libs/mdp/test/test_nodes_generic.py
  1860. share/afni/meica.libs/mdp/test/test_parallelclassifiers.py
  1861. share/afni/meica.libs/mdp/test/test_parallelflows.py
  1862. share/afni/meica.libs/mdp/test/test_parallelhinet.py
  1863. share/afni/meica.libs/mdp/test/test_parallelnodes.py
  1864. share/afni/meica.libs/mdp/test/test_pp_local.py
  1865. share/afni/meica.libs/mdp/test/test_pp_remote.py
  1866. share/afni/meica.libs/mdp/test/test_process_schedule.py
  1867. share/afni/meica.libs/mdp/test/test_reload.py
  1868. share/afni/meica.libs/mdp/test/test_schedule.py
  1869. share/afni/meica.libs/mdp/test/test_scikits.py
  1870. share/afni/meica.libs/mdp/test/test_seed.py
  1871. share/afni/meica.libs/mdp/test/test_svm_classifier.py
  1872. share/afni/meica.libs/mdp/test/test_tempdir.py
  1873. share/afni/meica.libs/mdp/test/test_utils.py
  1874. share/afni/meica.libs/mdp/test/test_utils_generic.py
  1875. share/afni/meica.libs/mdp/utils/__init__.py
  1876. share/afni/meica.libs/mdp/utils/_ordered_dict.py
  1877. share/afni/meica.libs/mdp/utils/_symeig.py
  1878. share/afni/meica.libs/mdp/utils/covariance.py
  1879. share/afni/meica.libs/mdp/utils/introspection.py
  1880. share/afni/meica.libs/mdp/utils/progress_bar.py
  1881. share/afni/meica.libs/mdp/utils/quad_forms.py
  1882. share/afni/meica.libs/mdp/utils/routines.py
  1883. share/afni/meica.libs/mdp/utils/slideshow.css
  1884. share/afni/meica.libs/mdp/utils/slideshow.py
  1885. share/afni/meica.libs/mdp/utils/templet.py
  1886. share/afni/meica.libs/mdp/utils/temporarydir.py
  1887. share/afni/meica.libs/nibabel/COMMIT_INFO.txt
  1888. share/afni/meica.libs/nibabel/__init__.py
  1889. share/afni/meica.libs/nibabel/affines.py
  1890. share/afni/meica.libs/nibabel/analyze.py
  1891. share/afni/meica.libs/nibabel/arrayproxy.py
  1892. share/afni/meica.libs/nibabel/arraywriters.py
  1893. share/afni/meica.libs/nibabel/batteryrunners.py
  1894. share/afni/meica.libs/nibabel/benchmarks/__init__.py
  1895. share/afni/meica.libs/nibabel/benchmarks/bench_load_save.py
  1896. share/afni/meica.libs/nibabel/casting.py
  1897. share/afni/meica.libs/nibabel/checkwarns.py
  1898. share/afni/meica.libs/nibabel/data.py
  1899. share/afni/meica.libs/nibabel/dft.py
  1900. share/afni/meica.libs/nibabel/ecat.py
  1901. share/afni/meica.libs/nibabel/environment.py
  1902. share/afni/meica.libs/nibabel/eulerangles.py
  1903. share/afni/meica.libs/nibabel/externals/__init__.py
  1904. share/afni/meica.libs/nibabel/externals/netcdf.py
  1905. share/afni/meica.libs/nibabel/externals/tests/__init__.py
  1906. share/afni/meica.libs/nibabel/externals/tests/test_netcdf.py
  1907. share/afni/meica.libs/nibabel/fileholders.py
  1908. share/afni/meica.libs/nibabel/filename_parser.py
  1909. share/afni/meica.libs/nibabel/freesurfer/__init__.py
  1910. share/afni/meica.libs/nibabel/freesurfer/io.py
  1911. share/afni/meica.libs/nibabel/freesurfer/mghformat.py
  1912. share/afni/meica.libs/nibabel/freesurfer/tests/__init__.py
  1913. share/afni/meica.libs/nibabel/freesurfer/tests/test_io.py
  1914. share/afni/meica.libs/nibabel/freesurfer/tests/test_mghformat.py
  1915. share/afni/meica.libs/nibabel/funcs.py
  1916. share/afni/meica.libs/nibabel/gifti/__init__.py
  1917. share/afni/meica.libs/nibabel/gifti/gifti.py
  1918. share/afni/meica.libs/nibabel/gifti/giftiio.py
  1919. share/afni/meica.libs/nibabel/gifti/parse_gifti_fast.py
  1920. share/afni/meica.libs/nibabel/gifti/tests/__init__.py
  1921. share/afni/meica.libs/nibabel/gifti/tests/data/ascii.gii
  1922. share/afni/meica.libs/nibabel/gifti/tests/data/base64bin.gii
  1923. share/afni/meica.libs/nibabel/gifti/tests/data/gzipbase64.gii
  1924. share/afni/meica.libs/nibabel/gifti/tests/data/label.gii
  1925. share/afni/meica.libs/nibabel/gifti/tests/data/rh.aparc.annot.gii
  1926. share/afni/meica.libs/nibabel/gifti/tests/data/rh.shape.curv.gii
  1927. share/afni/meica.libs/nibabel/gifti/tests/test_gifti.py
  1928. share/afni/meica.libs/nibabel/gifti/tests/test_giftiio.py
  1929. share/afni/meica.libs/nibabel/gifti/util.py
  1930. share/afni/meica.libs/nibabel/imageclasses.py
  1931. share/afni/meica.libs/nibabel/imageglobals.py
  1932. share/afni/meica.libs/nibabel/info.py
  1933. share/afni/meica.libs/nibabel/loadsave.py
  1934. share/afni/meica.libs/nibabel/minc.py
  1935. share/afni/meica.libs/nibabel/nicom/__init__.py
  1936. share/afni/meica.libs/nibabel/nicom/csareader.py
  1937. share/afni/meica.libs/nibabel/nicom/dicomreaders.py
  1938. share/afni/meica.libs/nibabel/nicom/dicomwrappers.py
  1939. share/afni/meica.libs/nibabel/nicom/dwiparams.py
  1940. share/afni/meica.libs/nibabel/nicom/structreader.py
  1941. share/afni/meica.libs/nibabel/nicom/tests/__init__.py
  1942. share/afni/meica.libs/nibabel/nicom/tests/data/csa2_b0.bin
  1943. share/afni/meica.libs/nibabel/nicom/tests/data/csa2_b1000.bin
  1944. share/afni/meica.libs/nibabel/nicom/tests/data/csa2_zero_len.bin.gz
  1945. share/afni/meica.libs/nibabel/nicom/tests/data/csa_slice_norm.dcm
  1946. share/afni/meica.libs/nibabel/nicom/tests/data/siemens_dwi_0.dcm.gz
  1947. share/afni/meica.libs/nibabel/nicom/tests/data/siemens_dwi_1000.dcm.gz
  1948. share/afni/meica.libs/nibabel/nicom/tests/data_pkgs.py
  1949. share/afni/meica.libs/nibabel/nicom/tests/test_csareader.py
  1950. share/afni/meica.libs/nibabel/nicom/tests/test_dicomreaders.py
  1951. share/afni/meica.libs/nibabel/nicom/tests/test_dicomwrappers.py
  1952. share/afni/meica.libs/nibabel/nicom/tests/test_dwiparams.py
  1953. share/afni/meica.libs/nibabel/nicom/tests/test_structreader.py
  1954. share/afni/meica.libs/nibabel/nifti1.py
  1955. share/afni/meica.libs/nibabel/onetime.py
  1956. share/afni/meica.libs/nibabel/optpkg.py
  1957. share/afni/meica.libs/nibabel/orientations.py
  1958. share/afni/meica.libs/nibabel/parrec.py
  1959. share/afni/meica.libs/nibabel/pkg_info.py
  1960. share/afni/meica.libs/nibabel/py3k.py
  1961. share/afni/meica.libs/nibabel/quaternions.py
  1962. share/afni/meica.libs/nibabel/spatialimages.py
  1963. share/afni/meica.libs/nibabel/spm2analyze.py
  1964. share/afni/meica.libs/nibabel/spm99analyze.py
  1965. share/afni/meica.libs/nibabel/testing/__init__.py
  1966. share/afni/meica.libs/nibabel/tests/__init__.py
  1967. share/afni/meica.libs/nibabel/tests/data/0.dcm
  1968. share/afni/meica.libs/nibabel/tests/data/1.dcm
  1969. share/afni/meica.libs/nibabel/tests/data/analyze.hdr
  1970. share/afni/meica.libs/nibabel/tests/data/example4d.nii.gz
  1971. share/afni/meica.libs/nibabel/tests/data/nifti1.hdr
  1972. share/afni/meica.libs/nibabel/tests/data/test.mgz
  1973. share/afni/meica.libs/nibabel/tests/data/tiny.mnc
  1974. share/afni/meica.libs/nibabel/tests/data/tinypet.v
  1975. share/afni/meica.libs/nibabel/tests/test_affines.py
  1976. share/afni/meica.libs/nibabel/tests/test_analyze.py
  1977. share/afni/meica.libs/nibabel/tests/test_arrayproxy.py
  1978. share/afni/meica.libs/nibabel/tests/test_arraywriters.py
  1979. share/afni/meica.libs/nibabel/tests/test_batteryrunners.py
  1980. share/afni/meica.libs/nibabel/tests/test_casting.py
  1981. share/afni/meica.libs/nibabel/tests/test_checkwarns.py
  1982. share/afni/meica.libs/nibabel/tests/test_data.py
  1983. share/afni/meica.libs/nibabel/tests/test_dft.py
  1984. share/afni/meica.libs/nibabel/tests/test_ecat.py
  1985. share/afni/meica.libs/nibabel/tests/test_endiancodes.py
  1986. share/afni/meica.libs/nibabel/tests/test_environment.py
  1987. share/afni/meica.libs/nibabel/tests/test_euler.py
  1988. share/afni/meica.libs/nibabel/tests/test_filehandles.py
  1989. share/afni/meica.libs/nibabel/tests/test_fileholders.py
  1990. share/afni/meica.libs/nibabel/tests/test_filename_parser.py
  1991. share/afni/meica.libs/nibabel/tests/test_files_interface.py
  1992. share/afni/meica.libs/nibabel/tests/test_floating.py
  1993. share/afni/meica.libs/nibabel/tests/test_funcs.py
  1994. share/afni/meica.libs/nibabel/tests/test_image_load_save.py
  1995. share/afni/meica.libs/nibabel/tests/test_minc.py
  1996. share/afni/meica.libs/nibabel/tests/test_nifti1.py
  1997. share/afni/meica.libs/nibabel/tests/test_orientations.py
  1998. share/afni/meica.libs/nibabel/tests/test_quaternions.py
  1999. share/afni/meica.libs/nibabel/tests/test_recoder.py
  2000. share/afni/meica.libs/nibabel/tests/test_round_trip.py
  2001. share/afni/meica.libs/nibabel/tests/test_scaling.py
  2002. share/afni/meica.libs/nibabel/tests/test_spatialimages.py
  2003. share/afni/meica.libs/nibabel/tests/test_spm2analyze.py
  2004. share/afni/meica.libs/nibabel/tests/test_spm99analyze.py
  2005. share/afni/meica.libs/nibabel/tests/test_trackvis.py
  2006. share/afni/meica.libs/nibabel/tests/test_utils.py
  2007. share/afni/meica.libs/nibabel/tests/test_wrapstruct.py
  2008. share/afni/meica.libs/nibabel/tmpdirs.py
  2009. share/afni/meica.libs/nibabel/trackvis.py
  2010. share/afni/meica.libs/nibabel/tripwire.py
  2011. share/afni/meica.libs/nibabel/volumeutils.py
  2012. share/afni/meica.libs/nibabel/wrapstruct.py
  2013. share/afni/meica.libs/select_model.py
  2014. share/afni/meica.libs/t2smap.py
  2015. share/afni/meica.libs/tedana.py
  2016. share/afni/shiny/3dMVM_validator_shiny/afni_funk.R
  2017. share/afni/shiny/3dMVM_validator_shiny/global.R
  2018. share/afni/shiny/3dMVM_validator_shiny/server.R
  2019. share/afni/shiny/3dMVM_validator_shiny/stat_functions.R
  2020. share/afni/shiny/3dMVM_validator_shiny/ui.R
  2021. share/afni/shiny/ClustExp_ShinyTemplate/afni_funk.R
  2022. share/afni/shiny/ClustExp_ShinyTemplate/global.R
  2023. share/afni/shiny/ClustExp_ShinyTemplate/lib_Rafni.R
  2024. share/afni/shiny/ClustExp_ShinyTemplate/server.R
  2025. share/afni/shiny/ClustExp_ShinyTemplate/stat_functions.R
  2026. share/afni/shiny/ClustExp_ShinyTemplate/ui.R
  2027. share/afni/shiny/FATCAT_matplot_shiny/global.R
  2028. share/afni/shiny/FATCAT_matplot_shiny/hclust_methods.csv
  2029. share/afni/shiny/FATCAT_matplot_shiny/server.R
  2030. share/afni/shiny/FATCAT_matplot_shiny/stat_methods.csv
  2031. share/afni/shiny/FATCAT_matplot_shiny/ui.R
  2032. share/afni/shiny/bayes_view/README.R
  2033. share/afni/shiny/bayes_view/global.R
  2034. share/afni/shiny/bayes_view/server.R
  2035. share/afni/shiny/bayes_view/ui.R
  2036. share/afni/shiny/misc/OmicCircos_pkg_install.R
  2037. share/doc/afni/CMakeLists.txt
  2038. share/doc/afni/README
  2039. share/doc/afni/README.Ifile
  2040. share/doc/afni/README.afnigui
  2041. share/doc/afni/README.atlas_building
  2042. share/doc/afni/README.attributes
  2043. share/doc/afni/README.bzip2
  2044. share/doc/afni/README.changes
  2045. share/doc/afni/README.compression
  2046. share/doc/afni/README.copyright
  2047. share/doc/afni/README.driver
  2048. share/doc/afni/README.environment
  2049. share/doc/afni/README.func_types
  2050. share/doc/afni/README.notes
  2051. share/doc/afni/README.permtest
  2052. share/doc/afni/README.plugouts
  2053. share/doc/afni/README.realtime
  2054. share/doc/afni/README.registration
  2055. share/doc/afni/README.render_scripts
  2056. share/doc/afni/README.roi
  2057. share/doc/afni/README.setup
  2058. share/doc/afni/README.texlike
  2059. share/doc/afni/README.volreg
  2060. share/doc/afni/README.web
  2061. share/doc/afni/README.ziad
  2062. @owner
  2063. @group
  2064. @mode
Collapse this list.
Dependency lines:
  • afni>0:science/afni
Conflicts:
CONFLICTS:
  • im
  • nifticlib
  • open-usp-tukubai
To install the port:
cd /usr/ports/science/afni/ && make install clean
To add the package, run one of these commands:
  • pkg install science/afni
  • pkg install afni
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: afni
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1756108500 SHA256 (afni-afni-AFNI_25.2.09_GH0.tar.gz) = ff6aacf8a4f2b0b60ea584ece08e23db665488bfb1978957f05f30df6c394e05 SIZE (afni-afni-AFNI_25.2.09_GH0.tar.gz) = 53321640

Packages (timestamps in pop-ups are UTC):
afni
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest-25.2.09------
FreeBSD:13:quarterly-25.1.15_1------
FreeBSD:14:latest-25.2.09------
FreeBSD:14:quarterly-25.1.15_1------
FreeBSD:15:latest--n/a-n/a--24.0.07
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gm4 : devel/m4
  2. R : math/R
  3. R-cran-lme4>0 : math/R-cran-lme4
  4. R-cran-snow>0 : science/R-cran-snow
  5. R-cran-psych>0 : math/R-cran-psych
  6. gettext-runtime>=0.22_1 : devel/gettext-runtime
  7. msgfmt : devel/gettext-tools
  8. gmake>=4.4.1 : devel/gmake
  9. python3.11 : lang/python311
  10. xorgproto>=0 : x11/xorgproto
  11. xorgproto>=0 : x11/xorgproto
  12. ice.pc : x11/libICE
  13. sm.pc : x11/libSM
  14. x11.pc : x11/libX11
  15. xau.pc : x11/libXau
  16. xcb.pc : x11/libxcb
  17. xdmcp.pc : x11/libXdmcp
  18. xext.pc : x11/libXext
  19. xft.pc : x11-fonts/libXft
  20. xi.pc : x11/libXi
  21. xmu.pc : x11-toolkits/libXmu
  22. xrender.pc : x11/libXrender
  23. xt.pc : x11-toolkits/libXt
  24. xpm.pc : x11/libXpm
  25. perl5>=5.42.r<5.43 : lang/perl5.42
Test dependencies:
  1. python3.11 : lang/python311
Runtime dependencies:
  1. endian : sysutils/endian
  2. ffmpeg : multimedia/ffmpeg
  3. qhull : math/qhull
  4. R : math/R
  5. R-cran-lme4>0 : math/R-cran-lme4
  6. R-cran-snow>0 : science/R-cran-snow
  7. R-cran-psych>0 : math/R-cran-psych
  8. cjpeg : graphics/jpeg-turbo
  9. python3.11 : lang/python311
  10. ice.pc : x11/libICE
  11. sm.pc : x11/libSM
  12. x11.pc : x11/libX11
  13. xau.pc : x11/libXau
  14. xcb.pc : x11/libxcb
  15. xdmcp.pc : x11/libXdmcp
  16. xext.pc : x11/libXext
  17. xft.pc : x11-fonts/libXft
  18. xi.pc : x11/libXi
  19. xmu.pc : x11-toolkits/libXmu
  20. xrender.pc : x11/libXrender
  21. xt.pc : x11-toolkits/libXt
  22. xpm.pc : x11/libXpm
  23. perl5>=5.42.r<5.43 : lang/perl5.42
Library dependencies:
  1. libexpat.so : textproc/expat2
  2. libXm.so : x11-toolkits/open-motif
  3. libf2c.so : lang/f2c
  4. libfontconfig.so : x11-fonts/fontconfig
  5. libfreetype.so : print/freetype2
  6. libgsl.so : math/gsl
  7. libicudata.so : devel/icu
  8. libnetcdff.so : science/netcdf-fortran
  9. libnetpbm.so : graphics/netpbm
  10. libpcre2-8.so : devel/pcre2
  11. libpng16.so : graphics/png
  12. libintl.so : devel/gettext-runtime
  13. libGL.so : graphics/libglvnd
  14. libGLU.so : graphics/libGLU
  15. libglib-2.0.so : devel/glib20
  16. libintl.so : devel/gettext-runtime
  17. libxml2.so : textproc/libxml2
  18. libXm.so.4 : x11-toolkits/open-motif
  19. libreadline.so.8 : devel/readline
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for afni-25.2.09: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings
Options name:
science_afni
USES:
gettext gl gmake gnome iconv jpeg:run motif readline perl5 python shebangfix tar:xz xorg
pkg-message:
For install:
For quick info, run "man afni". For AFNI configuration and usage, please visit the AFNI WEB site at http://afni.nimh.nih.gov. --- SUMA requires the nVidia graphics driver (x11/nvidia-driver*) or DRI (graphics/dri). --- FreeBSD ports for other AFNI versions are available at https://github.com/outpaddling/freebsd-ports-wip --- For large 3dDeconvolve analyses, you may need to increase one or more of the following shared memory limits using sysctl (and /etc/sysctl.conf to make the changes permanent): kern.ipc.shmall kern.ipc.shmmax kern.ipc.shmmin kern.ipc.shmmni kern.ipc.shmseg --- AFNI_PLUGIN_PATH should be set to /usr/local/lib/afni:/usr/local/share/afni AFNI_GLOBAL_SESSION should be set to /usr/local/share/afni. You can do this by sourcing /usr/local/etc/mri/afni.profiles for Bourne-style shells or or /usr/local/etc/mri/afni.cshrc for C-style shells.
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/afni/afni/tar.gz/AFNI_25.2.09?dummy=/
Collapse this list.

Number of commits found: 348 (showing only 100 on this page)

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Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
21.1.20
29 Jun 2021 20:45:33
commit hash: d6fa85db30df74564f9f0227288ca5d49beaa4b6commit hash: d6fa85db30df74564f9f0227288ca5d49beaa4b6commit hash: d6fa85db30df74564f9f0227288ca5d49beaa4b6commit hash: d6fa85db30df74564f9f0227288ca5d49beaa4b6 files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.20
21.1.19
29 Jun 2021 13:44:35
commit hash: c4a4d868413e3d1a19e0cc0a15313b4dd28dd0cdcommit hash: c4a4d868413e3d1a19e0cc0a15313b4dd28dd0cdcommit hash: c4a4d868413e3d1a19e0cc0a15313b4dd28dd0cdcommit hash: c4a4d868413e3d1a19e0cc0a15313b4dd28dd0cd files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.19
21.1.16
24 Jun 2021 18:02:04
commit hash: 1f1f18aa2e9d865413d608d6f076167518803e9dcommit hash: 1f1f18aa2e9d865413d608d6f076167518803e9dcommit hash: 1f1f18aa2e9d865413d608d6f076167518803e9dcommit hash: 1f1f18aa2e9d865413d608d6f076167518803e9d files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.16
21.1.13
23 Jun 2021 06:55:27
commit hash: 62516dbeee04d28f409452c1b43e6f509f70788ecommit hash: 62516dbeee04d28f409452c1b43e6f509f70788ecommit hash: 62516dbeee04d28f409452c1b43e6f509f70788ecommit hash: 62516dbeee04d28f409452c1b43e6f509f70788e files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.13
21.1.12_2
22 Jun 2021 18:53:08
commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77 files touched by this commit
Kevin Bowling (kbowling) search for other commits by this committer
graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824
21.1.12_1
16 Jun 2021 19:31:27
commit hash: 63e653adaa7493aa98f17f9fbc834c0aed7e096ecommit hash: 63e653adaa7493aa98f17f9fbc834c0aed7e096ecommit hash: 63e653adaa7493aa98f17f9fbc834c0aed7e096ecommit hash: 63e653adaa7493aa98f17f9fbc834c0aed7e096e files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
math/gsl: update to 2.7

From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6
(Only the first 15 lines of the commit message are shown above View all of this commit message)
21.1.12
16 Jun 2021 07:48:05
commit hash: de8f362148ee5793194ae5b8d4ec9c20f53cbc6fcommit hash: de8f362148ee5793194ae5b8d4ec9c20f53cbc6fcommit hash: de8f362148ee5793194ae5b8d4ec9c20f53cbc6fcommit hash: de8f362148ee5793194ae5b8d4ec9c20f53cbc6f files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.12
21.1.09
31 May 2021 20:54:09
commit hash: b15c2396c6807c1f5b54111627023df1ff8ed2b7commit hash: b15c2396c6807c1f5b54111627023df1ff8ed2b7commit hash: b15c2396c6807c1f5b54111627023df1ff8ed2b7commit hash: b15c2396c6807c1f5b54111627023df1ff8ed2b7 files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.09
21.1.08
27 May 2021 05:36:51
commit hash: 5b1a8896555a101f99b52217c3c717921cace949commit hash: 5b1a8896555a101f99b52217c3c717921cace949commit hash: 5b1a8896555a101f99b52217c3c717921cace949commit hash: 5b1a8896555a101f99b52217c3c717921cace949 files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.08
21.1.07
13 May 2021 12:19:19
commit hash: e86a7891a7114626e9cbec891f30b5f95a3f0198commit hash: e86a7891a7114626e9cbec891f30b5f95a3f0198commit hash: e86a7891a7114626e9cbec891f30b5f95a3f0198commit hash: e86a7891a7114626e9cbec891f30b5f95a3f0198 files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.07
21.1.06
09 May 2021 15:54:56
commit hash: 90697f109a94b9ab78a785f73981788caae54ec4commit hash: 90697f109a94b9ab78a785f73981788caae54ec4commit hash: 90697f109a94b9ab78a785f73981788caae54ec4commit hash: 90697f109a94b9ab78a785f73981788caae54ec4 files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.06
21.1.04
07 May 2021 07:37:36
commit hash: eea49ad365b0800327dbf7f54f6bea735c08bdf1commit hash: eea49ad365b0800327dbf7f54f6bea735c08bdf1commit hash: eea49ad365b0800327dbf7f54f6bea735c08bdf1commit hash: eea49ad365b0800327dbf7f54f6bea735c08bdf1 files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.04
21.1.03
30 Apr 2021 07:03:47
commit hash: bc5a5fbbeff5ac6ea89d6675f9312ca2fce72431commit hash: bc5a5fbbeff5ac6ea89d6675f9312ca2fce72431commit hash: bc5a5fbbeff5ac6ea89d6675f9312ca2fce72431commit hash: bc5a5fbbeff5ac6ea89d6675f9312ca2fce72431 files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.03
21.1.02
18 Apr 2021 18:21:42
commit hash: 68a233c30aca780b0f7ff9cb9e1ef929cd513983commit hash: 68a233c30aca780b0f7ff9cb9e1ef929cd513983commit hash: 68a233c30aca780b0f7ff9cb9e1ef929cd513983commit hash: 68a233c30aca780b0f7ff9cb9e1ef929cd513983 files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.02
21.1.01
11 Apr 2021 15:37:05
commit hash: 70207782ab13b1d6505d7240a055d71bd3cafe2acommit hash: 70207782ab13b1d6505d7240a055d71bd3cafe2acommit hash: 70207782ab13b1d6505d7240a055d71bd3cafe2acommit hash: 70207782ab13b1d6505d7240a055d71bd3cafe2a files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.01
21.1.00
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
21.1.00
07 Apr 2021 07:02:57
commit hash: f2e32f002de44e8c92bb7f6c8a1c93ea05255900commit hash: f2e32f002de44e8c92bb7f6c8a1c93ea05255900commit hash: f2e32f002de44e8c92bb7f6c8a1c93ea05255900commit hash: f2e32f002de44e8c92bb7f6c8a1c93ea05255900 files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
science/afni: update to 21.1.00
21.0.21
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
21.0.21
28 Mar 2021 07:56:12
Revision:569378Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.21
21.0.20
18 Mar 2021 16:36:28
Revision:568750Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.20

While here, adopt port.

Reported by:	portscout
21.0.19
17 Mar 2021 16:37:44
Revision:568676Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.19

Reported by:	portscout
21.0.18
16 Mar 2021 19:13:51
Revision:568604Original commit files touched by this commit
nc search for other commits by this committer
science/afni: Update to 21.0.18
21.0.17
15 Mar 2021 07:54:40
Revision:568439Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.17

Reported by:	portscout
21.0.16
12 Mar 2021 07:56:00
Revision:568145Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.16

Reported by:	portscout
21.0.15
11 Mar 2021 08:21:25
Revision:568069Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.15

Reported by:	portscout
21.0.14
09 Mar 2021 08:50:51
Revision:567907Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.14

Reported by:	portscout
21.0.13
05 Mar 2021 06:09:35
Revision:567366Original commit files touched by this commit
nc search for other commits by this committer
science/afni: Update to 21.0.13
21.0.12
01 Mar 2021 09:36:46
Revision:566844Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.12

Reported by:	portscout
21.0.10
24 Feb 2021 12:26:32
Revision:566472Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.10

Reported by:	portscout
21.0.09
23 Feb 2021 23:18:39
Revision:566432Original commit files touched by this commit
nc search for other commits by this committer
science/afni: Update to 21.0.09
21.0.08
12 Feb 2021 22:36:58
Revision:565074Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.08

Reported by:	portscout
21.0.07
09 Feb 2021 22:12:49
Revision:564824Original commit files touched by this commit
nc search for other commits by this committer
science/afni: Update to 21.0.07
21.0.06
28 Jan 2021 12:53:39
Revision:563134Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.6

Reported by:	portscout
21.0.04
20 Jan 2021 09:27:22
Revision:562124Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.04

Reported by:	portscout
21.0.03
17 Jan 2021 08:37:42
Revision:561806Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.03

Reported by:	portscout
21.0.02
13 Jan 2021 14:23:49
Revision:561469Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.02

Reported by:	portscout
21.0.00
10 Jan 2021 08:34:20
Revision:561024Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 21.0.00

Reported by:	portscout
20.3.04_1
04 Jan 2021 15:33:02
Revision:560299Original commit files touched by this commit
rene search for other commits by this committer
science/afni: use math/qhull instead of expired math/qhull5
20.3.04
27 Dec 2020 13:06:51
Revision:559359Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.3.04

Reported by:	portscout
20.3.03
10 Dec 2020 14:21:22
Revision:557438Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.3.03

Reported by:	portscout
20.3.02
15 Nov 2020 17:24:55
Revision:555239Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.3.02

Reported by:	portscout
20.3.00
04 Oct 2020 12:07:53
Revision:551387Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.3.00

Reported by:	portscout
20.2.19
30 Sep 2020 11:11:44
Revision:550682Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.19

Reported by:	portscout
20.2.18
22 Sep 2020 17:43:09
Revision:549616Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.18

Reported by:	portscout
20.2.16
03 Sep 2020 07:16:21
Revision:547424Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.16

Many utilities are not provided anymore. Most of them are marked in
src/Makefile.INCLUDE under the comment "not distributed 25 Aug 2020"

Others are not marked like that, but they are not shipped anyway, like
3dAnatNudge which has a comment that explains why:

"This program (3dAnatNudge) is old, obsolete, and not maintained!"

Reported by:	portscout
20.2.14
22 Aug 2020 17:32:58
Revision:545778Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.14

Reported by:	portscout
20.2.13
20 Aug 2020 15:57:33
Revision:545537Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.13

Reported by:	portscout
20.2.12
19 Aug 2020 10:46:34
Revision:545304Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.12

Reported by:	portscout
20.2.11
13 Aug 2020 05:44:11
Revision:544785Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.11

Reported by:	portscout
20.2.08
03 Aug 2020 17:02:26
Revision:544086Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.08

Reported by:	portscout
20.2.06
29 Jul 2020 16:10:22
Revision:543667Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.06

Reported by:	portscout
20.2.05
22 Jul 2020 06:19:32
Revision:542835Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.05

Reported by:	portscout
20.2.00
08 Jul 2020 10:40:39
Revision:541484Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.2.00

Reported by:	portscout
20.1.18
02 Jul 2020 06:55:50
Revision:541016Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.18

While here:

 * Reorder some variables
 * Remove duplicate USE_GL

Reported by:	portscout
20.1.17
21 Jun 2020 14:43:49
Revision:539768Original commit files touched by this commit
pi search for other commits by this committer
science/afni: update 20.1.16 -> 20.1.17

Reported by:	portscout
20.1.16
19 Jun 2020 06:55:14
Revision:539593Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.16

Reported by:	portscout
20.1.15
16 Jun 2020 06:31:27
Revision:539327Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.15

Reported by:	portscout
20.1.14
12 Jun 2020 09:25:02
Revision:538590Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: Update to 20.1.14

Reported by:	portscout
20.1.13
04 Jun 2020 16:49:57
Revision:537910Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.13

Reported by:	portscout
20.1.12
03 Jun 2020 14:44:25
Revision:537616Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.12

Reported by:	portscout
20.1.11
29 May 2020 15:20:45
Revision:536977Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.11

Reported by:	portscout
20.1.10
27 May 2020 16:11:57
Revision:536698Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.10

Reported by:	portscout
20.1.07
26 May 2020 05:45:24
Revision:536571Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.07

Reported by:	portscout
20.1.06
18 May 2020 01:29:41
Revision:535703Original commit files touched by this commit
linimon search for other commits by this committer
Mark as BROKEN on powerpc64:

  ./predicates_init.c:46: error: implicit declaration of function 'fpsetprec'

While here, remove OBE sparc64 stanza.
20.1.06
06 May 2020 08:22:40
Revision:534153Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.06

Reported by:	portscout
20.1.05_1
05 May 2020 16:07:54
Revision:534095Original commit files touched by this commit
jrm search for other commits by this committer
math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572
20.1.05
30 Apr 2020 15:03:17
Revision:533460Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.05

Reported by:	portscout
20.1.03
29 Apr 2020 06:55:48
Revision:533317Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.03

Reported by:	portscout
20.1.02
23 Apr 2020 06:34:33
Revision:532646Original commit files touched by this commit
fernape search for other commits by this committer
science/afni: update to 20.1.02

Reported by:	portscout
20.1.01
20 Apr 2020 12:21:49
Revision:532202Original commit files touched by this commit
jwb search for other commits by this committer
science/afni: Upgrade to 20.1.02

Added some common R-cran run dependencies
Removed obsolete reinplace patches
Improved do-install to better fit filesystem hierarchy
Releasing maintainership as I no longer work with any AFNI users

Reported by:    portscout
19.1.20_4
25 Oct 2019 23:41:34
Revision:515671Original commit files touched by this commit
tcberner search for other commits by this committer
math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
19.1.20_3
28 Sep 2019 10:56:15
Revision:513115Original commit files touched by this commit
zeising search for other commits by this committer
science/afni: Remove dependency on libXp

Remove dependency on libXp from science/afni, it is not needed, and libXp is
being deprecated.
Remove deprecation from science/afni
19.1.20_2
27 Sep 2019 16:18:59
Revision:513046Original commit files touched by this commit
zeising search for other commits by this committer
Deprecate x11/libXp, it is deprecated upstream

Deprecate x11/libXp, since it is about to be deprecated upstream.  Do *not*
yet set a removal date for x11/libXp, this will be decided later, once most
dependencies are fixed.
Deprecate all ports depending on x11/libXp.
* astro/xephem
* audio/xmcd
* audio/xmmix
* biology/ncbi-toolkit
* deskutils/xmdiary
* ftp/llnlxdir
* ftp/llnlxftp
* graphics/SciPlot
* misc/xtar
* multimedia/mpeg2play
* science/afni
* textproc/mgdiff

Sprinkle USES=xorg as needed.

Discussed with:	bapt
19.1.20_2
31 Aug 2019 17:11:57
Revision:510405Original commit files touched by this commit
sunpoet search for other commits by this committer
Bump PORTREVISION for science/netcdf-fortran shlib change
19.1.20_1
14 Aug 2019 12:16:13
Revision:508909Original commit files touched by this commit
mat search for other commits by this committer
Convert to UCL & cleanup pkg-message (categories s)
19.1.20_1
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
19.1.20
18 Jun 2019 19:00:55
Revision:504496Original commit files touched by this commit
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.20

Upstreamed FreeBSD patches, other minor fixes and enhancements

Reported by:    portscout, Rick Reynolds (NIH)
19.1.18
08 Jun 2019 19:14:18
Revision:503747Original commit files touched by this commit
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.18

Minor bugfixes/enhancements
19.1.14
01 Jun 2019 12:59:52
Revision:503233Original commit files touched by this commit
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.14

Minor bug fixes and enhancements, some FreeBSD patches upstreamed
19.1.10
22 May 2019 12:44:17
Revision:502266Original commit files touched by this commit
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.10

Rapid response from upstream on reported issue.  Additional patches to be
upstreamed in next release.
19.1.08
20 May 2019 19:35:57
Revision:502158Original commit files touched by this commit
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.08

Switch from personal dist snapshots to Github releases
Improve staging procedure to preserve results of build phase
Temporarily use bundled GLw pending fix of libglw port
2015.11.13_8
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
2015.11.13_7
10 Sep 2018 13:14:52
Revision:479406Original commit files touched by this commit
mat search for other commits by this committer
Add DOCS options to ports that should have one.

Also various fixes related to said option.

PR:		230864
Submitted by:	mat
exp-runs by:	antoine
2015.11.13_7
23 Jun 2018 08:27:14
Revision:473116Original commit files touched by this commit
tcberner search for other commits by this committer
Update math/gsl to 2.5

PR:		229067
2015.11.13_6
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
2015.11.13_5
31 Jan 2018 01:07:08
Revision:460452Original commit files touched by this commit
jwb search for other commits by this committer
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
2015.11.13_5
19 Dec 2017 14:41:29
Revision:456719Original commit files touched by this commit
linimon search for other commits by this committer
Mark more recently failing ports broken on aarch64.

While here, pet portlint and reformat some other BROKEN statements.

Approved by:	portmgr (tier-2 blanket)
2015.11.13_5
24 Jul 2017 18:26:39
Revision:446540Original commit files touched by this commit
pawel search for other commits by this committer
After r446199 libR.so has SONAME and was made visible for
consumer ports. Register correct dependency by using LIB_DEPENDS
instead of BUILD|RUN_DEPENDS dance.

math/rkward-kde4:
- Add 2 missing files to pkg-plist also

PR:		219776
Submitted by:	myself
Approved by:	maintainers timeouts
2015.11.13_5
03 Jul 2017 20:38:12
Revision:444988Original commit files touched by this commit
tcberner search for other commits by this committer
Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408
2015.11.13_4
23 May 2017 05:03:16
Revision:441503Original commit files touched by this commit
rezny search for other commits by this committer
Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
2015.11.13_3
04 May 2017 05:26:01
Revision:440090Original commit files touched by this commit
tcberner search for other commits by this committer
Fix shebangs

Reviewed by:		mat
Approved by:		mat (mentor)
Differential Revision:	https://reviews.freebsd.org/D10527
2015.11.13_2
02 May 2017 05:26:40
Revision:439928Original commit files touched by this commit
tcberner search for other commits by this committer
Update math/gsl to 2.3

This release introduces some new features and fixes several bugs:
	http://savannah.gnu.org/forum/forum.php?forum_id=8751

* update to 2.3 and take maintainership
* update math/py-gsl to 2.2.0 for gsl2 support
* update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support

PR:		218952
Exp-run by:	antoine
Reviewed by:	mat, rakuco
Approved by:	rakuco (mentor)
Differential Revision:	https://reviews.freebsd.org/D10522
2015.11.13_1
29 Nov 2016 21:15:41
Revision:427397Original commit files touched by this commit
jrm search for other commits by this committer
science/afni: Use BUILD_DEPENDS/RUN_DEPENDS instead of LIB_DEPENDS for
math/R, because R may be configured without libR.

While here, fix some stage-qa warnings about indirect dependencies.

Reviewed by:	AMDmi3
Approved by:	bacon4000@gmail.com (maintainer) swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8649
2015.11.13
19 May 2016 11:09:14
Revision:415503Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-messages

Approved by:	portmgr blanket
2015.11.13
19 May 2016 10:57:35
Revision:415501Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Fix trailing whitespace in Makefiles

Approved by:	portmgr blanket
2015.11.13
01 Apr 2016 14:25:18
Revision:412349Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
2015.11.13
27 Feb 2016 22:03:30
Revision:409693Original commit files touched by this commit
rakuco search for other commits by this committer
Update to 2015.11.13.

Upgrade to a more recent snapshot, and stop requiring GCC.

PR:		206930
Submitted by:	Jason Bacon <bacon4000@gmail.com> (maintainer)
2012.04.17.2129_12
11 Dec 2015 08:48:57
Revision:403506Original commit files touched by this commit
miwi search for other commits by this committer
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
2012.04.17.2129_12
01 Oct 2015 21:34:36
Revision:398387Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Pet portlint
- Switch to options helpers

Approved by:	portmgr blanket
2012.04.17.2129_12
22 Jun 2015 18:33:22
Revision:390310Original commit files touched by this commit
antoine search for other commits by this committer
Convert to USES=jpeg

Number of commits found: 348 (showing only 100 on this page)

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