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Port details
lm Software for sampling trajectories of the reaction-diffusion equations
2.3.0_9 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.3.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-09-09 20:57:45
Last Update: 2019-07-31 17:38:53
SVN Revision: 507719
License: UIUC_OPEN_SOURCE_LICENSE
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (29 items)
  1. /usr/local/share/licenses/lm-uiuc-2.3.0_9/catalog.mk
  2. /usr/local/share/licenses/lm-uiuc-2.3.0_9/LICENSE
  3. /usr/local/share/licenses/lm-uiuc-2.3.0_9/UIUC_OPEN_SOURCE_LICENSE
  4. bin/lm
  5. bin/lm-mpmpd
  6. bin/lm_python
  7. bin/lm_setdm
  8. bin/lm_setp
  9. bin/lm_setrm
  10. lib/lm/_lm.so
  11. lib/lm/lm.py
  12. lib/python/pyLM/CME.py
  13. lib/python/pyLM/LMLogger.py
  14. lib/python/pyLM/RDME.py
  15. lib/python/pyLM/__init__.py
  16. lib/python/pyLM/ipyInterface.py
  17. lib/python/pyLM/units.py
  18. lib/python/pySTDLM/CellArranger.py
  19. lib/python/pySTDLM/Cells.py
  20. lib/python/pySTDLM/Distributions.py
  21. lib/python/pySTDLM/NetworkVisualization.py
  22. lib/python/pySTDLM/OnTheFly.py
  23. lib/python/pySTDLM/PostProcessing.py
  24. lib/python/pySTDLM/SBMLReader.py
  25. lib/python/pySTDLM/StandardCells.py
  26. lib/python/pySTDLM/StandardReactionSystems.py
  27. lib/python/pySTDLM/StandardReactions.py
  28. lib/python/pySTDLM/__init__.py
  29. @comment lib/vmd/plugins/%%VMD_ARCH%%/molfile/lmplugin.so
Collapse this list.
Dependency lines:
  • lm-uiuc>0:science/lm
To install the port: cd /usr/ports/science/lm/ && make install clean
To add the package: pkg install lm-uiuc
PKGNAME: lm-uiuc
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. swig3.0 : devel/swig30
  2. arrayobject.h : math/py-numpy@py36
  3. gmake : devel/gmake
  4. gfortran9 : lang/gcc9
  5. python3.6 : lang/python36
  6. as : devel/binutils
Runtime dependencies:
  1. gfortran9 : lang/gcc9
  2. python3.6 : lang/python36
Library dependencies:
  1. libhdf5.so : science/hdf5
  2. libprotobuf.so : devel/protobuf
  3. libsz.so : science/szip
  4. libmpich.so : net/mpich
  5. libintl.so : devel/gettext-runtime
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. http://scs.illinois.edu/schulten/lm/download/lm23/

Number of commits found: 12

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
31 Jul 2019 16:38:53
Original commit files touched by this commit  2.3.0_9
Revision:507719
sunpoet search for other commits by this committer
Bump PORTREVISION for devel/protobuf shlib change
26 Jul 2019 20:46:57
Original commit files touched by this commit  2.3.0_8
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
05 Jul 2019 19:08:49
Original commit files touched by this commit  2.3.0_7
Revision:505909
sunpoet search for other commits by this committer
Update devel/protobuf to 3.8.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/protocolbuffers/protobuf/releases
PR:		238808
Exp-run by:	antoine
22 Apr 2019 13:16:34
Original commit files touched by this commit  2.3.0_6
Revision:499638
gerald search for other commits by this committer
Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl
31 Mar 2019 13:41:03
Original commit files touched by this commit  2.3.0_5
Revision:497411
sunpoet search for other commits by this committer
Update devel/protobuf to 3.7.1

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/protocolbuffers/protobuf/releases
PR:		236157
Exp-run by:	antoine
17 Jan 2019 06:24:51
Original commit files touched by this commit  2.3.0_4
Revision:490526
yuri search for other commits by this committer
science/lm: Do not set VMD_VARS twice

PR:		234747
Reported by:	tobik
05 Jan 2019 22:46:54
Original commit files touched by this commit  2.3.0_4
Revision:489412
sunpoet search for other commits by this committer
Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen
12 Dec 2018 01:35:36
Original commit files touched by this commit  2.3.0_3
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
03 Dec 2018 19:41:33
Original commit files touched by this commit  2.3.0_2
Revision:486531
sunpoet search for other commits by this committer
Update devel/protobuf to 3.6.1

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/protocolbuffers/protobuf/releases
PR:		231008
Exp-run by:	antoine
22 Sep 2018 16:36:38
Original commit files touched by this commit  2.3.0_1
Revision:480395
yuri search for other commits by this committer
Change 20 ports from net/mpich2 to net/mpich

mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

Ports:
math/scalapack science/nwchem science/quantum-espresso science/qmcpack
science/madness
science/qbox science/openmx science/jdftx science/fleur science/libgridxc
science/mdynamix science/lm science/dftbplus science/py-gpaw devel/ga
math/elpa net/charm science/gromacs math/pari math/arpack-ng-mpich
09 Sep 2018 21:16:02
Original commit files touched by this commit  2.3.0
Revision:479337
yuri search for other commits by this committer
science/lm: USES=python only when PYTHON=ON
09 Sep 2018 20:57:26
Original commit files touched by this commit  2.3.0
Revision:479335
yuri search for other commits by this committer
New port: science/lm: Software for sampling trajectories of the
reaction-diffusion equations

Number of commits found: 12

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