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Port details
lm Software for sampling trajectories of the reaction-diffusion equations
2.3.0_11 science Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.3.0_11Version of this port present on the latest quarterly branch.
Broken BROKEN: unfetchable
Deprecated DEPRECATED: Broken for more than 6 months
Expired This port expired on: 2020-08-26
Ignore IGNORE: is marked as broken: unfetchable
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-09-09 20:57:45
Last Update: 2020-08-27 11:25:47
SVN Revision: 546333
License: UIUC_OPEN_SOURCE_LICENSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (32 items)
Collapse this list.
  1. /usr/local/share/licenses/lm-uiuc-2.3.0_11/catalog.mk
  2. /usr/local/share/licenses/lm-uiuc-2.3.0_11/LICENSE
  3. /usr/local/share/licenses/lm-uiuc-2.3.0_11/UIUC_OPEN_SOURCE_LICENSE
  4. bin/lm
  5. bin/lm-mpmpd
  6. bin/lm_python
  7. bin/lm_setdm
  8. bin/lm_setp
  9. bin/lm_setrm
  10. lib/lm/_lm.so
  11. lib/lm/lm.py
  12. lib/python/pyLM/CME.py
  13. lib/python/pyLM/LMLogger.py
  14. lib/python/pyLM/RDME.py
  15. lib/python/pyLM/__init__.py
  16. lib/python/pyLM/ipyInterface.py
  17. lib/python/pyLM/units.py
  18. lib/python/pySTDLM/CellArranger.py
  19. lib/python/pySTDLM/Cells.py
  20. lib/python/pySTDLM/Distributions.py
  21. lib/python/pySTDLM/NetworkVisualization.py
  22. lib/python/pySTDLM/OnTheFly.py
  23. lib/python/pySTDLM/PostProcessing.py
  24. lib/python/pySTDLM/SBMLReader.py
  25. lib/python/pySTDLM/StandardCells.py
  26. lib/python/pySTDLM/StandardReactionSystems.py
  27. lib/python/pySTDLM/StandardReactions.py
  28. lib/python/pySTDLM/__init__.py
  29. @comment lib/vmd/plugins/%%VMD_ARCH%%/molfile/lmplugin.so
  30. @owner
  31. @group
  32. @mode
Collapse this list.
Dependency lines:
  • lm-uiuc>0:science/lm
No installation instructions: this port has been deleted.
The package name of this deleted port was:
PKGNAME: lm-uiuc
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
lm-uiuc
ABIlatestquarterly
FreeBSD:11:aarch642.3.0_1-
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch642.3.0_1-
FreeBSD:12:amd64--
FreeBSD:12:armv62.3.0_1-
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. swig : devel/swig
  2. arrayobject.h : math/py-numpy@py37
  3. gmake>=4.3 : devel/gmake
  4. gfortran9 : lang/gcc9
  5. python3.7 : lang/python37
  6. as : devel/binutils
Runtime dependencies:
  1. gfortran9 : lang/gcc9
  2. python3.7 : lang/python37
Library dependencies:
  1. libhdf5.so : science/hdf5
  2. libprotobuf.so : devel/protobuf
  3. libsz.so : science/szip
  4. libmpich.so : net/mpich
  5. libintl.so : devel/gettext-runtime
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://scs.illinois.edu/schulten/lm/download/lm23/
Collapse this list.
Port Moves
  • port deleted on 2020-08-27
    REASON: Has expired: Broken for more than 6 months

Number of commits found: 20

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
27 Aug 2020 11:25:47
Original commit files touched by this commit Revision:546333  2.3.0_11
rene search for other commits by this committer
Remove expired ports:

2020-08-26 audio/timidity++-tcltk: Broken for more than 6 months
2020-08-26 biology/pbcopper: Broken for more than 6 months
2020-08-26 devel/ace: Broken for more than 6 months
2020-08-26 devel/bin86: Broken for more than 6 months
2020-08-26 devel/erlang-oserl: Broken for more than 6 months
2020-08-20 emulators/qemu40: Please consider using qemu or qemu41
2020-08-26 games/linux-darwinia-demo: Broken for more than 6 months
2020-08-26 games/linux-defcon: Broken for more than 6 months
2020-08-26 games/linux-uplink-demo: Broken for more than 6 months
2020-08-26 games/xevil: Broken for more than 6 months
2020-08-26 games/xminesweep: Broken for more than 6 months
2020-08-26 graphics/backfract: Broken for more than 6 months
2020-08-26 japanese/kanjipad: Broken for more than 6 months
(Only the first 15 lines of the commit message are shown above View all of this commit message)
26 Jul 2020 07:32:00
Original commit files touched by this commit Revision:543440  2.3.0_11
antoine search for other commits by this committer
Deprecate ports broken for more than 6 months
17 Jun 2020 18:17:45
Original commit files touched by this commit Revision:539491  2.3.0_11
sunpoet search for other commits by this committer
Move devel/swig30 to devel/swig and update to 4.0.1

- Do not silence installation message
- Update dependent ports:
  - Fix build with swig 4.0.1
  - Update *_DEPENDS
  - Remove BINARY_ALIAS

Changes:	http://www.swig.org/news.php
PR:		246613
Exp-run by:	antoine
03 Jun 2020 18:32:06
Original commit files touched by this commit Revision:537830  2.3.0_11
sunpoet search for other commits by this committer
Bump PORTREVISION for devel/protobuf shlib change
22 Jan 2020 05:53:20
Original commit files touched by this commit Revision:523788  2.3.0_10
sunpoet search for other commits by this committer
Bump PORTREVISION for devel/protobuf shlib change
06 Jan 2020 03:27:22
Original commit files touched by this commit Revision:522196  2.3.0_9
yuri search for other commits by this committer
science/lm: Really unfetchable
06 Jan 2020 03:16:57
Original commit files touched by this commit Revision:522192  2.3.0_9
yuri search for other commits by this committer
science/lm: Not broken

Erroneously labeled as BROKEN/unfetchable in rev.522132,
which may have been made during a period of intermittent connectivity problems.
05 Jan 2020 10:26:04
Original commit files touched by this commit Revision:522132  2.3.0_9
antoine search for other commits by this committer
Mark a few ports broken (unfetchable)
31 Jul 2019 16:38:53
Original commit files touched by this commit Revision:507719  2.3.0_9
sunpoet search for other commits by this committer
Bump PORTREVISION for devel/protobuf shlib change
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  2.3.0_8
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
05 Jul 2019 19:08:49
Original commit files touched by this commit Revision:505909  2.3.0_7
sunpoet search for other commits by this committer
Update devel/protobuf to 3.8.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/protocolbuffers/protobuf/releases
PR:		238808
Exp-run by:	antoine
22 Apr 2019 13:16:34
Original commit files touched by this commit Revision:499638  2.3.0_6
gerald search for other commits by this committer
Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl
31 Mar 2019 13:41:03
Original commit files touched by this commit Revision:497411  2.3.0_5
sunpoet search for other commits by this committer
Update devel/protobuf to 3.7.1

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/protocolbuffers/protobuf/releases
PR:		236157
Exp-run by:	antoine
17 Jan 2019 06:24:51
Original commit files touched by this commit Revision:490526  2.3.0_4
yuri search for other commits by this committer
science/lm: Do not set VMD_VARS twice

PR:		234747
Reported by:	tobik
05 Jan 2019 22:46:54
Original commit files touched by this commit Revision:489412  2.3.0_4
sunpoet search for other commits by this committer
Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  2.3.0_3
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
03 Dec 2018 19:41:33
Original commit files touched by this commit Revision:486531  2.3.0_2
sunpoet search for other commits by this committer
Update devel/protobuf to 3.6.1

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/protocolbuffers/protobuf/releases
PR:		231008
Exp-run by:	antoine
22 Sep 2018 16:36:38
Original commit files touched by this commit Revision:480395  2.3.0_1
yuri search for other commits by this committer
Change 20 ports from net/mpich2 to net/mpich

mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

Ports:
math/scalapack science/nwchem science/quantum-espresso science/qmcpack
science/madness
science/qbox science/openmx science/jdftx science/fleur science/libgridxc
science/mdynamix science/lm science/dftbplus science/py-gpaw devel/ga
math/elpa net/charm science/gromacs math/pari math/arpack-ng-mpich
09 Sep 2018 21:16:02
Original commit files touched by this commit Revision:479337  2.3.0
yuri search for other commits by this committer
science/lm: USES=python only when PYTHON=ON
09 Sep 2018 20:57:26
Original commit files touched by this commit Revision:479335  2.3.0
yuri search for other commits by this committer
New port: science/lm: Software for sampling trajectories of the
reaction-diffusion equations

Number of commits found: 20