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Port details
openstructure Molecular modelling and visualization environment
1.7.1_10 science Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Deprecated DEPRECATED: Qt4 has been EOL since december 2015
Expired This port expired on: 2019-03-15
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-09 04:41:37
Last Update: 2019-03-16 21:55:51
SVN Revision: 495967
License: LGPL3
This project aims to provide an open-source, modular, flexible, molecular
modelling and visualization environment.

Molecular structures are a central aspect of OpenStructure and a rich
understanding of macromolecular structure datasets with access to atoms,
residues, chains, bonds and torsions is offered.

Features:
* Intuitive representation of structural subsets, so-called EntityViews, that
  can be created with a dedicated query language or constructed manually for
  more complex cases.
* Real-time rendering of molecular structures
* Interactive Analysis of Trajectories
* Support for common file formats such as PDB, mmCIF, SDF, PQR
* Read more about molecular structures in OpenStructure

WWW: https://openstructure.org/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (968 items)
  1. /usr/local/share/licenses/openstructure-1.7.1_10/catalog.mk
  2. /usr/local/share/licenses/openstructure-1.7.1_10/LICENSE
  3. /usr/local/share/licenses/openstructure-1.7.1_10/LGPL3
  4. bin/chemdict_tool
  5. bin/dng
  6. bin/lddt
  7. bin/molck
  8. bin/ost
  9. include/ost/base.hh
  10. include/ost/boost_filesystem_helper.hh
  11. include/ost/config.hh
  12. include/ost/conop/amino_acids.hh
  13. include/ost/conop/compound.hh
  14. include/ost/conop/compound_lib.hh
  15. include/ost/conop/compound_lib_base.hh
  16. include/ost/conop/conop.hh
  17. include/ost/conop/diag.hh
  18. include/ost/conop/heuristic.hh
  19. include/ost/conop/minimal_compound_lib.hh
  20. include/ost/conop/model_check.hh
  21. include/ost/conop/module_config.hh
  22. include/ost/conop/nonstandard.hh
  23. include/ost/conop/processor.hh
  24. include/ost/conop/ring_finder.hh
  25. include/ost/conop/rule_based.hh
  26. include/ost/db/module_config.hh
  27. include/ost/db/sqlite3.h
  28. include/ost/db/sqlite_conv.hh
  29. include/ost/db/sqlite_wrap.hh
  30. include/ost/dllexport.hh
  31. include/ost/dyn_cast.hh
  32. include/ost/export_helper/generic_property_def.hh
  33. include/ost/export_helper/pair_to_tuple_conv.hh
  34. include/ost/export_helper/vec_to_list_conv.hh
  35. include/ost/fixed_string.hh
  36. include/ost/generic_property.hh
  37. include/ost/geom/aligned_cuboid.hh
  38. include/ost/geom/circular_iterator.hh
  39. include/ost/geom/composite.hh
  40. include/ost/geom/composite2.hh
  41. include/ost/geom/composite2_op.hh
  42. include/ost/geom/composite3.hh
  43. include/ost/geom/composite3_op.hh
  44. include/ost/geom/composite_op.hh
  45. include/ost/geom/constants.hh
  46. include/ost/geom/def.hh
  47. include/ost/geom/exc.hh
  48. include/ost/geom/export_helper/vector.hh
  49. include/ost/geom/geom.hh
  50. include/ost/geom/mat.hh
  51. include/ost/geom/mat2.hh
  52. include/ost/geom/mat3.hh
  53. include/ost/geom/mat4.hh
  54. include/ost/geom/module_config.hh
  55. include/ost/geom/point_cloud.hh
  56. include/ost/geom/quat.hh
  57. include/ost/geom/transform.hh
  58. include/ost/geom/vec.hh
  59. include/ost/geom/vec2.hh
  60. include/ost/geom/vec3.hh
  61. include/ost/geom/vec4.hh
  62. include/ost/geom/vec_mat_predicates.hh
  63. include/ost/geom/vecmat2_op.hh
  64. include/ost/geom/vecmat3_op.hh
  65. include/ost/geom/vecmat4_op.hh
  66. include/ost/geom/vecmat_op.hh
  67. include/ost/gfx/bitmap_io.hh
  68. include/ost/gfx/collada_exporter.hh
  69. include/ost/gfx/color.hh
  70. include/ost/gfx/color_ops/basic_gradient_color_op.hh
  71. include/ost/gfx/color_ops/by_chain_color_op.hh
  72. include/ost/gfx/color_ops/by_element_color_op.hh
  73. include/ost/gfx/color_ops/color_op.hh
  74. include/ost/gfx/color_ops/entity_view_color_op.hh
  75. include/ost/gfx/color_ops/gradient_color_op.hh
  76. include/ost/gfx/color_ops/gradient_level_color_op.hh
  77. include/ost/gfx/color_ops/map_handle_color_op.hh
  78. include/ost/gfx/color_ops/uniform_color_op.hh
  79. include/ost/gfx/entity.hh
  80. include/ost/gfx/entity_fw.hh
  81. include/ost/gfx/exporter.hh
  82. include/ost/gfx/exporter_fw.hh
  83. include/ost/gfx/gfx.hh
  84. include/ost/gfx/gfx_fw.hh
  85. include/ost/gfx/gfx_node.hh
  86. include/ost/gfx/gfx_node_fw.hh
  87. include/ost/gfx/gfx_node_visitor.hh
  88. include/ost/gfx/gfx_object.hh
  89. include/ost/gfx/gfx_object_base.hh
  90. include/ost/gfx/gfx_object_fw.hh
  91. include/ost/gfx/gfx_prim.hh
  92. include/ost/gfx/gfx_test_object.hh
  93. include/ost/gfx/gl_helper.hh
  94. include/ost/gfx/gl_include.hh
  95. include/ost/gfx/glext_include.hh
  96. include/ost/gfx/glwin_base.hh
  97. include/ost/gfx/gost_exporter.hh
  98. include/ost/gfx/gradient.hh
  99. include/ost/gfx/gradient_manager.hh
  100. include/ost/gfx/impl/backbone_trace.hh
  101. include/ost/gfx/impl/cartoon_renderer.hh
  102. include/ost/gfx/impl/connect_renderer_base.hh
  103. include/ost/gfx/impl/cpk_renderer.hh
  104. include/ost/gfx/impl/custom_renderer.hh
  105. include/ost/gfx/impl/debug_renderer.hh
  106. include/ost/gfx/impl/entity_detail.hh
  107. include/ost/gfx/impl/entity_renderer.hh
  108. include/ost/gfx/impl/entity_renderer_fw.hh
  109. include/ost/gfx/impl/fast_spheres.hh
  110. include/ost/gfx/impl/glx_offscreen_buffer.hh
  111. include/ost/gfx/impl/line_trace_renderer.hh
  112. include/ost/gfx/impl/map_iso_gen.hh
  113. include/ost/gfx/impl/map_iso_gen_s.hh
  114. include/ost/gfx/impl/map_iso_spec.hh
  115. include/ost/gfx/impl/map_octree.hh
  116. include/ost/gfx/impl/mapped_property.hh
  117. include/ost/gfx/impl/octree_isocont.hh
  118. include/ost/gfx/impl/simple_renderer.hh
  119. include/ost/gfx/impl/sline_renderer.hh
  120. include/ost/gfx/impl/tabulated_trig.hh
  121. include/ost/gfx/impl/trace_renderer.hh
  122. include/ost/gfx/impl/trace_renderer_base.hh
  123. include/ost/gfx/input.hh
  124. include/ost/gfx/map_handle_color_op.hh
  125. include/ost/gfx/map_iso.hh
  126. include/ost/gfx/map_iso_prop.hh
  127. include/ost/gfx/map_slab.hh
  128. include/ost/gfx/material.hh
  129. include/ost/gfx/module_config.hh
  130. include/ost/gfx/offscreen_buffer.hh
  131. include/ost/gfx/povray.hh
  132. include/ost/gfx/povray_fw.hh
  133. include/ost/gfx/prim_list.hh
  134. include/ost/gfx/primitives.hh
  135. include/ost/gfx/render_mode.hh
  136. include/ost/gfx/render_options/cartoon_render_options.hh
  137. include/ost/gfx/render_options/cpk_render_options.hh
  138. include/ost/gfx/render_options/custom_render_options.hh
  139. include/ost/gfx/render_options/line_render_options.hh
  140. include/ost/gfx/render_options/line_trace_render_options.hh
  141. include/ost/gfx/render_options/render_options.hh
  142. include/ost/gfx/render_options/simple_render_options.hh
  143. include/ost/gfx/render_options/sline_render_options.hh
  144. include/ost/gfx/render_options/trace_render_options.hh
  145. include/ost/gfx/render_pass.hh
  146. include/ost/gfx/scene.hh
  147. include/ost/gfx/scene_observer.hh
  148. include/ost/gfx/selection.hh
  149. include/ost/gfx/surface.hh
  150. include/ost/gfx/symmetry_node.hh
  151. include/ost/gfx/texture.hh
  152. include/ost/gfx/vertex_array.hh
  153. include/ost/gfx/vertex_array_helper.hh
  154. include/ost/gui/admin.hh
  155. include/ost/gui/data_viewer/argand.hh
  156. include/ost/gui/data_viewer/data_viewer.hh
  157. include/ost/gui/data_viewer/data_viewer_panel.hh
  158. include/ost/gui/data_viewer/data_viewer_panel_base.hh
  159. include/ost/gui/data_viewer/draw_overlay.hh
  160. include/ost/gui/data_viewer/drawing_functions.hh
  161. include/ost/gui/data_viewer/fft_panel.hh
  162. include/ost/gui/data_viewer/img2qt.hh
  163. include/ost/gui/data_viewer/info_panel.hh
  164. include/ost/gui/data_viewer/mask_overlay.hh
  165. include/ost/gui/data_viewer/null_overlay.hh
  166. include/ost/gui/data_viewer/overlay.hh
  167. include/ost/gui/data_viewer/overlay_base.hh
  168. include/ost/gui/data_viewer/overlay_base_fw.hh
  169. include/ost/gui/data_viewer/overlay_manager.hh
  170. include/ost/gui/data_viewer/overlay_manager_fw.hh
  171. include/ost/gui/data_viewer/overlay_manager_gui.hh
  172. include/ost/gui/data_viewer/overlay_manager_observer.hh
  173. include/ost/gui/data_viewer/pointlist_overlay.hh
  174. include/ost/gui/data_viewer/pointlist_overlay_base.hh
  175. include/ost/gui/data_viewer/strategies.hh
  176. include/ost/gui/data_viewer/strategies_fw.hh
  177. include/ost/gui/data_viewer/viewer_normalizer.hh
  178. include/ost/gui/dock_widget.hh
  179. include/ost/gui/file_browser.hh
  180. include/ost/gui/file_loader.hh
  181. include/ost/gui/file_type_dialog.hh
  182. include/ost/gui/file_viewer.hh
  183. include/ost/gui/gl_canvas.hh
  184. include/ost/gui/gl_win.hh
  185. include/ost/gui/gosty_app.hh
  186. include/ost/gui/main.hh
  187. include/ost/gui/main_area.hh
  188. include/ost/gui/main_window.hh
  189. include/ost/gui/messages/log_reader.hh
  190. include/ost/gui/messages/message_box_widget.hh
  191. include/ost/gui/messages/message_widget.hh
  192. include/ost/gui/module_config.hh
  193. include/ost/gui/panels/bottom_bar.hh
  194. include/ost/gui/panels/button_bar.hh
  195. include/ost/gui/panels/button_box.hh
  196. include/ost/gui/panels/drop_box.hh
  197. include/ost/gui/panels/event_button.hh
  198. include/ost/gui/panels/panel_bar.hh
  199. include/ost/gui/panels/panel_bar_widget_holder.hh
  200. include/ost/gui/panels/panel_manager.hh
  201. include/ost/gui/panels/panel_widget_container.hh
  202. include/ost/gui/panels/side_bar.hh
  203. include/ost/gui/panels/splitter_panel_bar.hh
  204. include/ost/gui/panels/tabbed_panel_bar.hh
  205. include/ost/gui/perspective.hh
  206. include/ost/gui/python_shell/completer_base.hh
  207. include/ost/gui/python_shell/dir_model.hh
  208. include/ost/gui/python_shell/gutter.hh
  209. include/ost/gui/python_shell/main_thread_runner.hh
  210. include/ost/gui/python_shell/output_redirector.hh
  211. include/ost/gui/python_shell/path_completer.hh
  212. include/ost/gui/python_shell/python_completer.hh
  213. include/ost/gui/python_shell/python_context_parser.hh
  214. include/ost/gui/python_shell/python_interpreter.hh
  215. include/ost/gui/python_shell/python_interpreter_worker.hh
  216. include/ost/gui/python_shell/python_shell.hh
  217. include/ost/gui/python_shell/python_shell_fw.hh
  218. include/ost/gui/python_shell/python_shell_text_document_layout.hh
  219. include/ost/gui/python_shell/python_shell_widget.hh
  220. include/ost/gui/python_shell/python_syntax_highlighter.hh
  221. include/ost/gui/python_shell/python_tokenizer.hh
  222. include/ost/gui/python_shell/shell_history.hh
  223. include/ost/gui/python_shell/state.hh
  224. include/ost/gui/python_shell/state_machine.hh
  225. include/ost/gui/python_shell/text_logger.hh
  226. include/ost/gui/python_shell/transition.hh
  227. include/ost/gui/python_shell/transition_guard.hh
  228. include/ost/gui/scene_menu.hh
  229. include/ost/gui/scene_selection.hh
  230. include/ost/gui/scene_win/context_menu.hh
  231. include/ost/gui/scene_win/current_selection_node.hh
  232. include/ost/gui/scene_win/custom_part_node.hh
  233. include/ost/gui/scene_win/entity_node.hh
  234. include/ost/gui/scene_win/entity_part_node.hh
  235. include/ost/gui/scene_win/gfx_scene_node.hh
  236. include/ost/gui/scene_win/label_node.hh
  237. include/ost/gui/scene_win/render_mode_node.hh
  238. include/ost/gui/scene_win/render_modes_node.hh
  239. include/ost/gui/scene_win/root_node.hh
  240. include/ost/gui/scene_win/scene_node.hh
  241. include/ost/gui/scene_win/scene_win.hh
  242. include/ost/gui/scene_win/scene_win_model.hh
  243. include/ost/gui/sequence_viewer/align_properties_painter.hh
  244. include/ost/gui/sequence_viewer/alignment_view_object.hh
  245. include/ost/gui/sequence_viewer/background_painter.hh
  246. include/ost/gui/sequence_viewer/base_row.hh
  247. include/ost/gui/sequence_viewer/base_view_object.hh
  248. include/ost/gui/sequence_viewer/conservation_painter.hh
  249. include/ost/gui/sequence_viewer/painter.hh
  250. include/ost/gui/sequence_viewer/secstr_row.hh
  251. include/ost/gui/sequence_viewer/seq_secstr_painter.hh
  252. include/ost/gui/sequence_viewer/seq_selection_painter.hh
  253. include/ost/gui/sequence_viewer/seq_text_painter.hh
  254. include/ost/gui/sequence_viewer/sequence_delegate.hh
  255. include/ost/gui/sequence_viewer/sequence_model.hh
  256. include/ost/gui/sequence_viewer/sequence_row.hh
  257. include/ost/gui/sequence_viewer/sequence_search_bar.hh
  258. include/ost/gui/sequence_viewer/sequence_table_view.hh
  259. include/ost/gui/sequence_viewer/sequence_view_object.hh
  260. include/ost/gui/sequence_viewer/sequence_viewer.hh
  261. include/ost/gui/sequence_viewer/tick_painter.hh
  262. include/ost/gui/sequence_viewer/title_row.hh
  263. include/ost/gui/thin_splitter.hh
  264. include/ost/gui/tools/manipulator.hh
  265. include/ost/gui/tools/map_tool.hh
  266. include/ost/gui/tools/measure_tool.hh
  267. include/ost/gui/tools/mouse_event.hh
  268. include/ost/gui/tools/selection_tool.hh
  269. include/ost/gui/tools/tool.hh
  270. include/ost/gui/tools/tool_bar.hh
  271. include/ost/gui/tools/tool_manager.hh
  272. include/ost/gui/tools/tool_option.hh
  273. include/ost/gui/tools/tool_option_group.hh
  274. include/ost/gui/tools/tool_options.hh
  275. include/ost/gui/tools/tool_options_widget.hh
  276. include/ost/gui/tools/tool_options_win.hh
  277. include/ost/gui/widget.hh
  278. include/ost/gui/widget_geom_handler.hh
  279. include/ost/gui/widget_pool.hh
  280. include/ost/gui/widget_registry.hh
  281. include/ost/gui/widget_state_saver.hh
  282. include/ost/img/alg/alg_mirror.hh
  283. include/ost/img/alg/alg_shift.hh
  284. include/ost/img/alg/alg_transform.hh
  285. include/ost/img/alg/anisotropic.hh
  286. include/ost/img/alg/auto_correlate.hh
  287. include/ost/img/alg/clear.hh
  288. include/ost/img/alg/clip_min_max.hh
  289. include/ost/img/alg/conjugate.hh
  290. include/ost/img/alg/convolute.hh
  291. include/ost/img/alg/correlate.hh
  292. include/ost/img/alg/cross_correlate.hh
  293. include/ost/img/alg/density_slice.hh
  294. include/ost/img/alg/dft.hh
  295. include/ost/img/alg/discrete_shrink.hh
  296. include/ost/img/alg/fft.hh
  297. include/ost/img/alg/fftw_helper.hh
  298. include/ost/img/alg/fill.hh
  299. include/ost/img/alg/filter.hh
  300. include/ost/img/alg/fourier_filters.hh
  301. include/ost/img/alg/fractional_shift.hh
  302. include/ost/img/alg/gaussian.hh
  303. include/ost/img/alg/gaussian_gradient_magnitude.hh
  304. include/ost/img/alg/gaussian_laplacian.hh
  305. include/ost/img/alg/highest_peak_search_3d.hh
  306. include/ost/img/alg/histogram.hh
  307. include/ost/img/alg/line_average.hh
  308. include/ost/img/alg/line_iterator.hh
  309. include/ost/img/alg/local_sigma_threshold.hh
  310. include/ost/img/alg/mask_image.hh
  311. include/ost/img/alg/module_config.hh
  312. include/ost/img/alg/negate.hh
  313. include/ost/img/alg/norm.hh
  314. include/ost/img/alg/norm_linear.hh
  315. include/ost/img/alg/norm_log.hh
  316. include/ost/img/alg/norm_od.hh
  317. include/ost/img/alg/normalizer.hh
  318. include/ost/img/alg/normalizer_factory.hh
  319. include/ost/img/alg/polar.hh
  320. include/ost/img/alg/power_spectrum.hh
  321. include/ost/img/alg/randomize.hh
  322. include/ost/img/alg/rscrosscorr.hh
  323. include/ost/img/alg/smooth_mask_image.hh
  324. include/ost/img/alg/stat.hh
  325. include/ost/img/alg/stat_accumulator.hh
  326. include/ost/img/alg/stat_min_max.hh
  327. include/ost/img/alg/threshold.hh
  328. include/ost/img/alg/transcendentals.hh
  329. include/ost/img/alg/transform.hh
  330. include/ost/img/alg/transform_fw.hh
  331. include/ost/img/alg/transformation_base.hh
  332. include/ost/img/alg/transformations.hh
  333. include/ost/img/algorithm.hh
  334. include/ost/img/circle_mask.hh
  335. include/ost/img/composite_mask.hh
  336. include/ost/img/data.hh
  337. include/ost/img/data_algorithm.hh
  338. include/ost/img/data_observer.hh
  339. include/ost/img/data_types.hh
  340. include/ost/img/debug.hh
  341. include/ost/img/dllexport.hh
  342. include/ost/img/extent.hh
  343. include/ost/img/extent_iterator.hh
  344. include/ost/img/extent_mask.hh
  345. include/ost/img/image.hh
  346. include/ost/img/image_factory.hh
  347. include/ost/img/image_fw.hh
  348. include/ost/img/image_handle.hh
  349. include/ost/img/image_handle_fw.hh
  350. include/ost/img/image_impl.hh
  351. include/ost/img/image_list.hh
  352. include/ost/img/image_state.hh
  353. include/ost/img/image_state/binop.hh
  354. include/ost/img/image_state/dispatch.hh
  355. include/ost/img/image_state/image_state.hh
  356. include/ost/img/image_state/image_state_algorithm.hh
  357. include/ost/img/image_state/image_state_base.hh
  358. include/ost/img/image_state/image_state_base_fw.hh
  359. include/ost/img/image_state/image_state_def.hh
  360. include/ost/img/image_state/image_state_factory.hh
  361. include/ost/img/image_state/image_state_frequency_domain.hh
  362. include/ost/img/image_state/image_state_fw.hh
  363. include/ost/img/image_state/image_state_half_frequency_domain.hh
  364. include/ost/img/image_state/image_state_impl.hh
  365. include/ost/img/image_state/image_state_spatial_domain.hh
  366. include/ost/img/image_state/image_state_visitor.hh
  367. include/ost/img/image_state/image_state_visitor_fw.hh
  368. include/ost/img/image_state/index.hh
  369. include/ost/img/image_state/type_fw.hh
  370. include/ost/img/image_state/value_holder.hh
  371. include/ost/img/image_state_fw.hh
  372. include/ost/img/inverted_mask.hh
  373. include/ost/img/map.hh
  374. include/ost/img/mask.hh
  375. include/ost/img/mask_base.hh
  376. include/ost/img/mask_base_fw.hh
  377. include/ost/img/mask_info_convert.hh
  378. include/ost/img/mask_op.hh
  379. include/ost/img/mask_visitor.hh
  380. include/ost/img/module_config.hh
  381. include/ost/img/normalizer_fw.hh
  382. include/ost/img/normalizer_impl.hh
  383. include/ost/img/null_data.hh
  384. include/ost/img/observable.hh
  385. include/ost/img/paste_impl.hh
  386. include/ost/img/peak.hh
  387. include/ost/img/phase.hh
  388. include/ost/img/physical_units.hh
  389. include/ost/img/pixel_sampling.hh
  390. include/ost/img/point.hh
  391. include/ost/img/point_list.hh
  392. include/ost/img/polygon_mask.hh
  393. include/ost/img/progress.hh
  394. include/ost/img/raster_image/raster_image.hh
  395. include/ost/img/size.hh
  396. include/ost/img/spherical_mask.hh
  397. include/ost/img/util.cc
  398. include/ost/img/util.hh
  399. include/ost/img/value_util.hh
  400. include/ost/img/vecmat.hh
  401. include/ost/info/geom_info_conversion.hh
  402. include/ost/info/info.hh
  403. include/ost/info/info_error.hh
  404. include/ost/info/info_fw.hh
  405. include/ost/info/info_group.hh
  406. include/ost/info/info_handle.hh
  407. include/ost/info/info_impl.hh
  408. include/ost/info/info_impl_fw.hh
  409. include/ost/info/info_item.hh
  410. include/ost/info/info_path.hh
  411. include/ost/info/info_set.hh
  412. include/ost/info/info_verbose_visitor.hh
  413. include/ost/info/info_visitor.hh
  414. include/ost/info/item_type.hh
  415. include/ost/info/item_type_cast.hh
  416. include/ost/info/module_config.hh
  417. include/ost/integrity_error.hh
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  819. lib/python2.7/site-packages/ost/gui/scene/hsc_widget.py
  820. lib/python2.7/site-packages/ost/gui/scene/hsc_widget.pyc
  821. lib/python2.7/site-packages/ost/gui/scene/immutable_gradient_info_handler.py
  822. lib/python2.7/site-packages/ost/gui/scene/immutable_gradient_info_handler.pyc
  823. lib/python2.7/site-packages/ost/gui/scene/immutable_preset_info_handler.py
  824. lib/python2.7/site-packages/ost/gui/scene/immutable_preset_info_handler.pyc
  825. lib/python2.7/site-packages/ost/gui/scene/init_inspector.py
  826. lib/python2.7/site-packages/ost/gui/scene/init_inspector.pyc
  827. lib/python2.7/site-packages/ost/gui/scene/inspector_widget.py
  828. lib/python2.7/site-packages/ost/gui/scene/inspector_widget.pyc
  829. lib/python2.7/site-packages/ost/gui/scene/line_trace_widget.py
  830. lib/python2.7/site-packages/ost/gui/scene/line_trace_widget.pyc
  831. lib/python2.7/site-packages/ost/gui/scene/map_level_widget.py
  832. lib/python2.7/site-packages/ost/gui/scene/map_level_widget.pyc
  833. lib/python2.7/site-packages/ost/gui/scene/preset.py
  834. lib/python2.7/site-packages/ost/gui/scene/preset.pyc
  835. lib/python2.7/site-packages/ost/gui/scene/preset_editor_list_model.py
  836. lib/python2.7/site-packages/ost/gui/scene/preset_editor_list_model.pyc
  837. lib/python2.7/site-packages/ost/gui/scene/preset_editor_widget.py
  838. lib/python2.7/site-packages/ost/gui/scene/preset_editor_widget.pyc
  839. lib/python2.7/site-packages/ost/gui/scene/preset_info_handler.py
  840. lib/python2.7/site-packages/ost/gui/scene/preset_info_handler.pyc
  841. lib/python2.7/site-packages/ost/gui/scene/preset_list_model.py
  842. lib/python2.7/site-packages/ost/gui/scene/preset_list_model.pyc
  843. lib/python2.7/site-packages/ost/gui/scene/preset_widget.py
  844. lib/python2.7/site-packages/ost/gui/scene/preset_widget.pyc
  845. lib/python2.7/site-packages/ost/gui/scene/query_editor.py
  846. lib/python2.7/site-packages/ost/gui/scene/query_editor.pyc
  847. lib/python2.7/site-packages/ost/gui/scene/remote.py
  848. lib/python2.7/site-packages/ost/gui/scene/remote.pyc
  849. lib/python2.7/site-packages/ost/gui/scene/render_mode_widget.py
  850. lib/python2.7/site-packages/ost/gui/scene/render_mode_widget.pyc
  851. lib/python2.7/site-packages/ost/gui/scene/render_op.py
  852. lib/python2.7/site-packages/ost/gui/scene/render_op.pyc
  853. lib/python2.7/site-packages/ost/gui/scene/render_options_widget.py
  854. lib/python2.7/site-packages/ost/gui/scene/render_options_widget.pyc
  855. lib/python2.7/site-packages/ost/gui/scene/scene_observer_impl.py
  856. lib/python2.7/site-packages/ost/gui/scene/scene_observer_impl.pyc
  857. lib/python2.7/site-packages/ost/gui/scene/scene_selection_helper.py
  858. lib/python2.7/site-packages/ost/gui/scene/scene_selection_helper.pyc
  859. lib/python2.7/site-packages/ost/gui/scene/simple_widget.py
  860. lib/python2.7/site-packages/ost/gui/scene/simple_widget.pyc
  861. lib/python2.7/site-packages/ost/gui/scene/sline_widget.py
  862. lib/python2.7/site-packages/ost/gui/scene/sline_widget.pyc
  863. lib/python2.7/site-packages/ost/gui/scene/toolbar_options_widget.py
  864. lib/python2.7/site-packages/ost/gui/scene/toolbar_options_widget.pyc
  865. lib/python2.7/site-packages/ost/gui/scene/trace_widget.py
  866. lib/python2.7/site-packages/ost/gui/scene/trace_widget.pyc
  867. lib/python2.7/site-packages/ost/gui/scene/tube_widget.py
  868. lib/python2.7/site-packages/ost/gui/scene/tube_widget.pyc
  869. lib/python2.7/site-packages/ost/gui/scene/uniform_color_widget.py
  870. lib/python2.7/site-packages/ost/gui/scene/uniform_color_widget.pyc
  871. lib/python2.7/site-packages/ost/gui/scene/visibility_op.py
  872. lib/python2.7/site-packages/ost/gui/scene/visibility_op.pyc
  873. lib/python2.7/site-packages/ost/gui/scene/wireframe_widget.py
  874. lib/python2.7/site-packages/ost/gui/scene/wireframe_widget.pyc
  875. lib/python2.7/site-packages/ost/gui/table.py
  876. lib/python2.7/site-packages/ost/gui/table.pyc
  877. lib/python2.7/site-packages/ost/gui/trajectory_viewer.py
  878. lib/python2.7/site-packages/ost/gui/trajectory_viewer.pyc
  879. lib/python2.7/site-packages/ost/img/__init__.py
  880. lib/python2.7/site-packages/ost/img/__init__.pyc
  881. lib/python2.7/site-packages/ost/img/_ost_img.so
  882. lib/python2.7/site-packages/ost/img/alg/__init__.py
  883. lib/python2.7/site-packages/ost/img/alg/__init__.pyc
  884. lib/python2.7/site-packages/ost/img/alg/_ost_img_alg.so
  885. lib/python2.7/site-packages/ost/info/__init__.py
  886. lib/python2.7/site-packages/ost/info/__init__.pyc
  887. lib/python2.7/site-packages/ost/info/_ost_info.so
  888. lib/python2.7/site-packages/ost/io/__init__.py
  889. lib/python2.7/site-packages/ost/io/__init__.pyc
  890. lib/python2.7/site-packages/ost/io/_ost_io.so
  891. lib/python2.7/site-packages/ost/io/remote.py
  892. lib/python2.7/site-packages/ost/io/remote.pyc
  893. lib/python2.7/site-packages/ost/io/repository.py
  894. lib/python2.7/site-packages/ost/io/repository.pyc
  895. lib/python2.7/site-packages/ost/mol/__init__.py
  896. lib/python2.7/site-packages/ost/mol/__init__.pyc
  897. lib/python2.7/site-packages/ost/mol/_ost_mol.so
  898. lib/python2.7/site-packages/ost/mol/alg/__init__.py
  899. lib/python2.7/site-packages/ost/mol/alg/__init__.pyc
  900. lib/python2.7/site-packages/ost/mol/alg/_ost_mol_alg.so
  901. lib/python2.7/site-packages/ost/mol/alg/hbond.py
  902. lib/python2.7/site-packages/ost/mol/alg/hbond.pyc
  903. lib/python2.7/site-packages/ost/mol/alg/helix_kinks.py
  904. lib/python2.7/site-packages/ost/mol/alg/helix_kinks.pyc
  905. lib/python2.7/site-packages/ost/mol/alg/qsscoring.py
  906. lib/python2.7/site-packages/ost/mol/alg/qsscoring.pyc
  907. lib/python2.7/site-packages/ost/mol/alg/structure_analysis.py
  908. lib/python2.7/site-packages/ost/mol/alg/structure_analysis.pyc
  909. lib/python2.7/site-packages/ost/mol/alg/superpose.py
  910. lib/python2.7/site-packages/ost/mol/alg/superpose.pyc
  911. lib/python2.7/site-packages/ost/mol/alg/trajectory_analysis.py
  912. lib/python2.7/site-packages/ost/mol/alg/trajectory_analysis.pyc
  913. lib/python2.7/site-packages/ost/mol/alg/views.py
  914. lib/python2.7/site-packages/ost/mol/alg/views.pyc
  915. lib/python2.7/site-packages/ost/ost_startup.py
  916. lib/python2.7/site-packages/ost/seq/__init__.py
  917. lib/python2.7/site-packages/ost/seq/__init__.pyc
  918. lib/python2.7/site-packages/ost/seq/_ost_seq.so
  919. lib/python2.7/site-packages/ost/seq/alg/__init__.py
  920. lib/python2.7/site-packages/ost/seq/alg/__init__.pyc
  921. lib/python2.7/site-packages/ost/seq/alg/_ost_seq_alg.so
  922. lib/python2.7/site-packages/ost/seq/alg/mat.py
  923. lib/python2.7/site-packages/ost/seq/alg/mat.pyc
  924. lib/python2.7/site-packages/ost/seq/alg/renumber.py
  925. lib/python2.7/site-packages/ost/seq/alg/renumber.pyc
  926. lib/python2.7/site-packages/ost/settings.py
  927. lib/python2.7/site-packages/ost/settings.pyc
  928. lib/python2.7/site-packages/ost/stutil.py
  929. lib/python2.7/site-packages/ost/stutil.pyc
  930. lib/python2.7/site-packages/ost/table.py
  931. lib/python2.7/site-packages/ost/table.pyc
  932. lib/python2.7/site-packages/ost/table_selector.py
  933. lib/python2.7/site-packages/ost/table_selector.pyc
  934. lib/python2.7/site-packages/ost/testutils.py
  935. lib/python2.7/site-packages/ost/testutils.pyc
  936. lib/python2.7/site-packages/ost/xmlrunner.py
  937. lib/python2.7/site-packages/ost/xmlrunner.pyc
  938. libexec/openstructure/gosty
  939. libexec/openstructure/ost_config
  940. share/openstructure/atom_scattering_properties.txt
  941. share/openstructure/gui/icons/add_icon.png
  942. share/openstructure/gui/icons/close_icon.png
  943. share/openstructure/gui/icons/critical_icon.png
  944. share/openstructure/gui/icons/delete_icon.png
  945. share/openstructure/gui/icons/distance_icon.png
  946. share/openstructure/gui/icons/find_icon.png
  947. share/openstructure/gui/icons/information_icon.png
  948. share/openstructure/gui/icons/map_icon.png
  949. share/openstructure/gui/icons/menubar_icon.png
  950. share/openstructure/gui/icons/refresh.png
  951. share/openstructure/gui/icons/rigid_body_manipulator_icon.png
  952. share/openstructure/gui/icons/selection_icon.png
  953. share/openstructure/gui/icons/show_sidebar_icon.png
  954. share/openstructure/gui/icons/site_icon.png
  955. share/openstructure/gui/icons/split_icon.png
  956. share/openstructure/gui/icons/warning_icon.png
  957. share/openstructure/gui/images/logo-small.png
  958. share/openstructure/scene/gradients.xml
  959. share/openstructure/scene/icons/color_icon.png
  960. share/openstructure/scene/icons/preset_icon.png
  961. share/openstructure/scene/icons/render_icon.png
  962. share/openstructure/scene/icons/tool_icon.png
  963. share/openstructure/scene/presets.xml
  964. share/openstructure/stereo_chemical_props.txt
  965. share/openstructure/textures/glyph_texture.png
  966. share/openstructure/textures/test_texture.png
  967. @postexec /usr/sbin/service ldconfig restart > /dev/null
  968. @postunexec /usr/sbin/service ldconfig restart > /dev/null
  969. Collapse this list.

Dependency line: openstructure>0:science/openstructure


No installation instructions: this port has been deleted.

The package name of this deleted port was:

PKGNAME: openstructure

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1531473520
SHA256 (openstructure-1.7.1.tar.gz) = a3715a921e3f992ae66ebdc19e6bcb161292bd83ac1302174ff33dc1fc98db50
SIZE (openstructure-1.7.1.tar.gz) = 59275493


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. fftw3>0 : math/fftw3
  2. cmake : devel/cmake
  3. ninja : devel/ninja
  4. eigen3.pc : math/eigen3
  5. python2.7 : lang/python27
  6. py27-qt4-core>=4.12.1 : devel/py-qt4-core@py27
  7. py27-qt4-gui>=4.12.1 : x11-toolkits/py-qt4-gui@py27
  8. xorgproto>=0 : x11/xorgproto
  9. xorgproto>=0 : x11/xorgproto
  10. moc : devel/qt4-moc
  11. qmake : devel/qt4-qmake
  12. rcc : devel/qt4-rcc
  13. uic : devel/qt4-uic
Runtime dependencies:
  1. py27-numpy>0 : math/py-numpy@py27
  2. bash : shells/bash
  3. python2.7 : lang/python27
  4. py27-qt4-core>=4.12.1 : devel/py-qt4-core@py27
  5. py27-qt4-gui>=4.12.1 : x11-toolkits/py-qt4-gui@py27
Library dependencies:
  1. libboost_filesystem.so : devel/boost-libs
  2. libfftw3f.so : math/fftw3-float
  3. libpng16.so : graphics/png
  4. libtiff.so : graphics/tiff
  5. libboost_python27.so : devel/boost-python-libs@py27
  6. libGL.so : graphics/mesa-libs
  7. libGLU.so : graphics/libGLU
  8. libQtCore.so : devel/qt4-corelib
  9. libQtGui.so : x11-toolkits/qt4-gui
  10. libQtNetwork.so : net/qt4-network
  11. libQtOpenGL.so : graphics/qt4-opengl
  12. libQtXml.so : textproc/qt4-xml
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
cmake eigen:3 gl python:2.7 pyqt:4 qt:4 shebangfix

Master Sites:
  1. https://git.scicore.unibas.ch/schwede/openstructure/repository/1.7.1/archive.tar.gz?dummy=/
Port Moves
  • port deleted on 2019-03-16
    REASON: Has expired: Qt4 has been EOL since december 2015

Number of commits found: 15

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
16 Mar 2019 21:55:51
Original commit files touched by this commit  1.7.1_10
Revision:495967
tcberner search for other commits by this committer
Qt4 deprecation: Remove Qt4 and its consumes.

2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015
(Only the first 15 lines of the commit message are shown above View all of this commit message)
16 Feb 2019 19:05:33
Original commit files touched by this commit  1.7.1_10
Revision:493059
yuri search for other commits by this committer
science/openstructure: python:2.7 for now

PR:		234781
Reported by:	antoine
26 Dec 2018 09:06:35
Original commit files touched by this commit  1.7.1_10
Revision:488363
tcberner search for other commits by this committer
Update math/eigen3 to 3.3.7

- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7
25 Dec 2018 20:25:40
Original commit files touched by this commit  1.7.1_9
Revision:488341
tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
12 Dec 2018 01:35:36
Original commit files touched by this commit  1.7.1_9
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
12 Dec 2018 00:15:50
Original commit files touched by this commit  1.7.1_8
Revision:487266
jbeich search for other commits by this committer
devel/boost-*: update to 1.69.0

Changes:	http://www.boost.org/users/history/version_1_69_0.html
PR:		232525
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17645
02 Dec 2018 15:41:48
Original commit files touched by this commit  1.7.1_7
Revision:486467
rene search for other commits by this committer
Mark QT4 ports/functionality for removal on 2019-03-15

While here, chase some KDE4 ports and functionality, these are scheduled for
removal on 2018-12-31. Change the default option/flavor to QT5 where applicable
or use alternative toolkits like GTK.

Submitted by:	tcberner
Reviewed by:	adridg, jhale, rene, tcberner
Approved by:	portmgr (implicit, flavor hook)
Differential Revision:	https://reviews.freebsd.org/D17741
22 Nov 2018 20:18:37
Original commit files touched by this commit  1.7.1_7
Revision:485614
tcberner search for other commits by this committer
pyqt: Change install directories for Python flavor support

* PyQt could not be installed for multiple Python versions at
  the same time, as there were conflicting files.

  This patch creates Python-version versioned directories for
  all these, and further installs binaries with a version number.

* Note, there might be some hickups for software that depends on
  on of the .so's provided by PyQt5, which might not be found
  anymore autmotically, and maybe need some LD-flaggery.

* Update PyQt5 to 5.10.1

* Mark www/py-qt5-webengine broken. It is unforuntately no longer
  compatible with the old qt5-webengine-5.9.4 we ship.

PR:		232745
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D8714
11 Sep 2018 18:34:28
Original commit files touched by this commit  1.7.1_6
Revision:479538
zeising search for other commits by this committer
Change x11/xorgproto to become a build dep

Change x11/xorgproto to become a build time dependency when added to
USE_XORG.  Change the dependency to be on the port, rather than a file the
port installs.
Fix fallout.
Bump portrevision on depending ports.

PR:		230909
Reviewed by:	eadler
Approved by:	portmgr (antoine)
Obtained
from:	https://github.com/FreeBSDDesktop/freebsd-ports/tree/feature/xorgproto
exp-run:	antoine
Differential Revision:	https://reviews.freebsd.org/D16906
09 Aug 2018 06:58:31
Original commit files touched by this commit  1.7.1_5
Revision:476723
jbeich search for other commits by this committer
devel/boost-*: update to 1.68.0

- Switch to C++14 for libboost_system to support C++14 consumers

Changes:	http://www.boost.org/users/history/version_1_68_0.html
PR:		229569
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D16165
13 Jul 2018 09:24:52
Original commit files touched by this commit  1.7.1_4
Revision:474569
yuri search for other commits by this committer
science/openstructure: Add USE_CXXSTD=c++98; Use MASTER_SITES instead of
USE_GITLAB

USE_GITLAB doesn't work in this case because it requires GL_COMMIT while only
DISTVERSION
should be sufficient.

USE_CXXSTD=c++98 is used because -DCMAKE_CXX_FLAGS='-std=c++98' os overridden.

Reported by:	tobik
13 Jul 2018 05:32:19
Original commit files touched by this commit  1.7.1_3
Revision:474549
yuri search for other commits by this committer
science/openstructure: Fix build by using -std=c++98

The upstream recommended to use -std=c++98 to fix C++ errors on CURRENT.
Also switch to USE_GITLAB.

Reported by:	fallout (build failure)
Reported by:	mat (USE_GITLAB use)
10 Jul 2018 06:13:50
Original commit files touched by this commit  1.7.1_2
Revision:474335
yuri search for other commits by this committer
science/openstructure: Fix build on 12 broken due to the obvious misuse of
std::getline

Reported by:	fallout
09 Jul 2018 19:48:44
Original commit files touched by this commit  1.7.1_1
Revision:474299
yuri search for other commits by this committer
science/openstructure: Change MASTER_SITES to project's gitlab tarball URL

Also add bas as runtime dependency
09 Jul 2018 04:41:17
Original commit files touched by this commit  1.7.1
Revision:474223
yuri search for other commits by this committer
New port: science/openstructure: Molecular modelling and visualization
environment

Number of commits found: 15

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