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Port details
py-trx-python Experiments with new file format for tractography
0.6 science Σ=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.6Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-12-17 19:40:40
Last Update: 2026-09-20 08:01:53
Commit Hash: d9379d2
Also Listed In: python
License: BSD3CLAUSE
WWW:
https://tee-ar-ex.github.io/trx-python/
Description: #
trx is a Python implementation of the trx file-format for tractography data.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages: #
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist #
There is no configure plist information for this port.
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}trx-python>0:science/py-trx-python@${PY_FLAVOR}
To install the port: #
cd /usr/ports/science/py-trx-python/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-trx-python
  • pkg install py312-trx-python
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py312-trx-python listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py312-trx-python
Package flavors (<flavor>: <package>) #
  • py312: py312-trx-python
distinfo: #
TIMESTAMP = 1789880568 SHA256 (trx_python-0.6.tar.gz) = 434d53ca9ba347680ff334124c5882668f322660c75aba480e88bdbba8de349f SIZE (trx_python-0.6.tar.gz) = 125275
Packages (timestamps in pop-ups are UTC): #
py312-trx-python
ABIaarch64amd64armv6armv7i386
FreeBSD:14:latest0.60.6--0.6
FreeBSD:14:quarterly0.60.6--0.6
FreeBSD:15:latest0.60.6n/a-n/a
FreeBSD:15:quarterly0.60.6n/a-n/a
FreeBSD:16:latest0.60.6n/a-n/a
Dependencies #
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies: #
  1. py312-setuptools>=63.1.0 : devel/py-setuptools@py312
  2. py312-setuptools-scm>=7 : devel/py-setuptools-scm@py312
  3. py312-wheel>0 : devel/py-wheel@py312
  4. py312-cython>=3.2.9 : lang/cython@py312
  5. python3.12 : lang/python312
  6. py312-build>=0 : devel/py-build@py312
  7. py312-installer>=0 : devel/py-installer@py312
Test dependencies: #
  1. py312-psutil>0 : sysutils/py-psutil@py312
  2. py312-pytest-console-scripts>=0 : devel/py-pytest-console-scripts@py312
  3. py312-pytest>=7,1 : devel/py-pytest@py312
  4. python3.12 : lang/python312
Runtime dependencies: #
  1. py312-deepdiff>0 : devel/py-deepdiff@py312
  2. py312-nibabel>=5 : science/py-nibabel@py312
  3. py312-numpy>=1.22 : math/py-numpy@py312
  4. py312-typer>=0.9 : devel/py-typer@py312
  5. python3.12 : lang/python312
This port is required by: #
for Run #
  1. science/py-dipy
Configuration Options: #
No options to configure
Options name: #
science_py-trx-python
USES: #
python
FreshPorts was unable to extract/find any pkg message #
Master Sites: #
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/t/trx_python/
  2. https://pypi.org/packages/source/t/trx_python/
Collapse this list.

Number of commits found: 10 #

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.6
20 Sep 2026 08:01:53
commit hash: d9379d2d6da432fa6ffa0ccc64ae01f623c65152commit hash: d9379d2d6da432fa6ffa0ccc64ae01f623c65152commit hash: d9379d2d6da432fa6ffa0ccc64ae01f623c65152commit hash: d9379d2d6da432fa6ffa0ccc64ae01f623c65152 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-trx-python: update 0.4.0 → 0.6
0.4.0
31 Jul 2026 07:08:37
commit hash: 813ca905450d5a38d89b471480e529c4ae78b3b0commit hash: 813ca905450d5a38d89b471480e529c4ae78b3b0commit hash: 813ca905450d5a38d89b471480e529c4ae78b3b0commit hash: 813ca905450d5a38d89b471480e529c4ae78b3b0 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-trx-python: update 0.3 → 0.4.0
0.3_1
05 May 2026 19:29:37
commit hash: 2bf3834a197ccf8956332378eda8dd7577965246commit hash: 2bf3834a197ccf8956332378eda8dd7577965246commit hash: 2bf3834a197ccf8956332378eda8dd7577965246commit hash: 2bf3834a197ccf8956332378eda8dd7577965246 files touched by this commit		 Max Brazhnikov (makc) search for other commits by this committer 
*/*: bump PORTREVISION after switching to NumPy 2.x
0.3
05 May 2026 19:29:37
commit hash: b0b4d9e1eae890d0de1591e20fb37358439a2ff6commit hash: b0b4d9e1eae890d0de1591e20fb37358439a2ff6commit hash: b0b4d9e1eae890d0de1591e20fb37358439a2ff6commit hash: b0b4d9e1eae890d0de1591e20fb37358439a2ff6 files touched by this commit Sanity Test Failure		 Max Brazhnikov (makc) search for other commits by this committer 
*/*: Switch to NumPy 2.x

PR:		294328
Exp-run:	antoine
0.3
03 Apr 2026 20:52:43
commit hash: d04d23ae37d04c8ddf74c04ee868900b9189295acommit hash: d04d23ae37d04c8ddf74c04ee868900b9189295acommit hash: d04d23ae37d04c8ddf74c04ee868900b9189295acommit hash: d04d23ae37d04c8ddf74c04ee868900b9189295a files touched by this commit		 Charlie Li (vishwin) search for other commits by this committer 
python.mk: retire ${PYNUMPY}

With both math/py-numpy (2) and math/py-numpy1, the variable stopped
making sense. Also remove the upper version bound.
0.3
09 Apr 2025 13:57:46
commit hash: 5a47a9dcef3bebe89fb20bc3537a8ce1a734e6b2commit hash: 5a47a9dcef3bebe89fb20bc3537a8ce1a734e6b2commit hash: 5a47a9dcef3bebe89fb20bc3537a8ce1a734e6b2commit hash: 5a47a9dcef3bebe89fb20bc3537a8ce1a734e6b2 files touched by this commit		 Po-Chuan Hsieh (sunpoet) search for other commits by this committer 
science/py-trx-python: Add NO_ARCH

Approved by:	portmgr (blanket)
0.3
09 Nov 2024 02:50:28
commit hash: 8540aca3ace7e962b115a3b66f5ef0af7bfac6cacommit hash: 8540aca3ace7e962b115a3b66f5ef0af7bfac6cacommit hash: 8540aca3ace7e962b115a3b66f5ef0af7bfac6cacommit hash: 8540aca3ace7e962b115a3b66f5ef0af7bfac6ca files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-trx-python: update 0.2.9 → 0.3
0.2.9
24 Jun 2024 22:17:01
commit hash: 14a73ac2f1ba7b3926015479cf6cb833cedf0a08commit hash: 14a73ac2f1ba7b3926015479cf6cb833cedf0a08commit hash: 14a73ac2f1ba7b3926015479cf6cb833cedf0a08commit hash: 14a73ac2f1ba7b3926015479cf6cb833cedf0a08 files touched by this commit		 Wen Heping (wen) search for other commits by this committer 
science/py-trx-python: Fix build with removing setuptools from RUN_D

PR:		270510
Approved by:	portmgr(blanket, fix build)
0.2.9
29 Feb 2024 07:18:32
commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454 files touched by this commit		 Charlie Li (vishwin) search for other commits by this committer 
devel/py-setuptools-scm: update to 8.0.4

Directory and PORTNAME changed to match normalised name in release
tarball; consumers updated to match.

Although setuptools itself is specified as a run dependency in the
Python package metadata, it is currently left out here to prevent
environment pollution until at least PR 270510 is committed.
Additionally, this version of setuptools-scm requires setuptools>=61,
which means this version is only meant for USE_PYTHON=pep517 ports
as all USE_PYTHON=distutils ports will switch to devel/py-setuptools58
also after PR 270510. science/py-emmet-core is switched to
devel/py-setuptools_scm7 accordingly, as it specifies setuptools-scm<8.
devel/py-{flit-scm,hatch-vcs} have ${PY_SETUPTOOLS} added to
RUN_DEPENDS to compensate.

Further details: https://wiki.freebsd.org/Python/setuptools

Reported by: yuri
Co-authored by: matthew
Exp-run by: antoine (earlier iteration)
Approved by: yuri (science/py-emmet-core, previous iteration)
PR: 272134
Differential Revision: https://reviews.freebsd.org/D39288
0.2.9
17 Dec 2023 19:01:48
commit hash: f47c4702d35c68b06f643f35c9cb97aa064e4bb5commit hash: f47c4702d35c68b06f643f35c9cb97aa064e4bb5commit hash: f47c4702d35c68b06f643f35c9cb97aa064e4bb5commit hash: f47c4702d35c68b06f643f35c9cb97aa064e4bb5 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-trx-python: New port: Experiments with new file format for
tractography

Number of commits found: 10

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