Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

hhsuite Remote protein homology detection suite

3.3.0_1 3.3.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-10-01 15:12:07

Also Listed In: science

License: GPLv3

Dependency lines:

• hhsuite>0:biology/hhsuite

hyphy Hypothesis testing using Phylogenies

2.5.42 2.5.42Version of this port present on the latest quarterly branch.

Maintainer: jrm@FreeBSD.org

Port Added: 2022-10-01 21:00:09

License: MIT

Dependency lines:

• hyphy>0:biology/hyphy

kmcp Accurate metagenomic profiling & fast large-scale genome searching

0.8.4_2 0.8.4_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-10-08 20:54:11

License: MIT

Dependency lines:

• kmcp>0:biology/kmcp

ncbi-entrez-direct Access to the NCBI's suite of interconnected databases

14.9.20210423_7 14.9.20210423_7Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2022-10-08 20:54:11

Also Listed In: perl5

License: PD

Dependency lines:

• ncbi-entrez-direct>0:biology/ncbi-entrez-direct

seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation

2.3.1_1 2.3.1_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-10-08 20:54:11

License: MIT

Dependency lines:

• seqkit>0:biology/seqkit

taxonkit Practical and efficient NCBI taxonomy toolkit

0.13.0_1 0.13.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-10-08 20:54:11

License: MIT

Dependency lines:

• taxonkit>0:biology/taxonkit

unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers

0.19.0_5 0.19.0_5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-10-08 20:54:11

License: MIT

Dependency lines:

• unikmer>0:biology/unikmer