Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

kmcp Accurate metagenomic profiling & fast large-scale genome searching

0.9.4_16 0.9.4_16Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-11-01 15:53:31

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• kmcp>0:biology/kmcp

ncbi-cxx-toolkit NCBI C++ Toolkit

29.6.0 29.6.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-13 18:42:09

Also Listed In: devel science

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-cxx-toolkit>0:biology/ncbi-cxx-toolkit

ncbi-entrez-direct Access to the NCBI's suite of interconnected databases

14.9.20210423_32 14.9.20210423_32Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2025-11-01 15:53:31

Also Listed In: perl5

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-entrez-direct>0:biology/ncbi-entrez-direct

seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation

2.10.0_7 2.10.0_7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-11-01 15:53:31

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• seqkit>0:biology/seqkit

seqwish Alignment to variation graph inducer

0.7.11_2 0.7.11_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-18 20:51:10

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• seqwish>0:biology/seqwish

taxonkit Practical and efficient NCBI taxonomy toolkit

0.19.0_7 0.19.0_7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-11-01 15:53:31

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• taxonkit>0:biology/taxonkit

unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers

0.20.0_11 0.20.0_11Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-11-01 15:53:31

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• unikmer>0:biology/unikmer

viennarna Alignment tools for the structural analysis of RNA

2.7.0_2 2.7.0_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-18 20:51:07

License: ViennaRNALicense

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• viennarna>0:biology/viennarna