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Port details
freebayes Bayesian haplotype-based polymorphism discovery and genotyping
1.2.0_3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.2.0_3Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-04-20 00:07:39
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
License: MIT
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/bamleftalign
  2. bin/freebayes
  3. /usr/local/share/licenses/freebayes-1.2.0_3/catalog.mk
  4. /usr/local/share/licenses/freebayes-1.2.0_3/LICENSE
  5. /usr/local/share/licenses/freebayes-1.2.0_3/MIT
Collapse this list.
Dependency lines:
  • freebayes>0:biology/freebayes
To install the port: cd /usr/ports/biology/freebayes/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/freebayes
  • pkg install freebayes
PKGNAME: freebayes
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
freebayes
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd641.2.0_31.2.0_3
FreeBSD:11:armv6--
FreeBSD:11:i3861.2.0_31.2.0_3
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd641.2.0_31.2.0_3
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3861.2.0_31.2.0_3
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd641.2.0_31.2.0_3
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3861.2.0_31.2.0_3
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd641.2.0_3-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3861.2.0_3-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
This port is required by:
for Run
  1. biology/ddocent

Configuration Options:
Options name:

USES:

Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/ekg/freebayes/tar.gz/v1.2.0?dummy=/
Collapse this list.

Number of commits found: 9

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  1.2.0_3
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.2.0_3
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
02 Jan 2021 01:46:09
Original commit files touched by this commit Revision:559904  1.2.0_3
linimon search for other commits by this committer
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.

While here, pet portlint (Makevar order).

Approved by:	portmgr (tier-2 blanket)
21 Sep 2020 18:14:57
Original commit files touched by this commit Revision:549476  1.2.0_3
se search for other commits by this committer
Fix build with -fno-common
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  1.2.0_2
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  1.2.0_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
18 Sep 2018 09:28:35
Original commit files touched by this commit Revision:480003  1.2.0
linimon search for other commits by this committer
Upgrade these ports to USES=compiler:c++11-lang to fix build on gcc-based
archs such as powerpc64.

Tested for no effect on amd64.

While here, pet portlint.

Approved by:	portgmr (tier-2 blanket)
21 Jun 2018 23:52:37
Original commit files touched by this commit Revision:473009  1.2.0
linimon search for other commits by this committer
Mark as broken on aarch64, and, where appropriate, armvX.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
20 Apr 2018 00:07:28
Original commit files touched by this commit Revision:467806  1.2.0
jwb search for other commits by this committer
biology/freebayes: Bayesian haplotype-based polymorphism discovery and
genotyping

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15116

Number of commits found: 9