Port details |
- p5-bioperl-devel A collection of Perl modules for bioinformatics (developer release)
- 1.5.2 biology
=1 1.5.2Version of this port present on the latest quarterly branch. DEPRECATED: no longer under development
This port expired on: 2009-05-31
- Maintainer: mauricio@arareko.net
 - Port Added: 2001-08-14 06:36:36
- Last Update: 2009-06-05 20:38:36
- SVN Revision: UNKNOWN
- People watching this port, also watch:: p5-Bio-ASN1-EntrezGene, p5-Syntax-Highlight-Perl-Improved, py39-biopython, p5-XML-DOM-XPath
- Also Listed In: perl5
- License: not specified in port
- Description:
- The Bioperl Project is an international association of developers of open
source Perl tools for bioinformatics, genomics and life science research.
Bioperl is a collection of object-oriented Perl modules created by the
Bioperl Project. It forms the basis of a large number of bioinformatics and
genomics applications.
(For an interesting aside on "How Perl saved the Human Genome Project", see
http://bioperl.org/GetStarted/tpj_ls_bio.html)
WWW: http://bioperl.org/
cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ 
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- p5-bioperl>0:biology/p5-bioperl-devel
- No installation instructions:
- This port has been deleted.
- PKGNAME: p5-bioperl
- Flavors: there is no flavor information for this port.
- distinfo:
- There is no distinfo for this port.
No package information for this port in our database- Sometimes this happens. Not all ports have packages.
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- Wrap.pm : lang/perl5.8
- DB_File.pm : lang/perl5.8
- EntrezGene.pm : biology/p5-Bio-ASN1-EntrezGene
- AutoClass.pm : devel/p5-Class-AutoClass
- ITextWriter.pm : devel/p5-Data-Stag
- SxprWriter.pm : devel/p5-Data-Stag
- XMLWriter.pm : devel/p5-Data-Stag
- SVG.pm : graphics/p5-GD-SVG
- Directed.pm : math/p5-Graph
- Common.pm : www/p5-libwww
- Scalar.pm : devel/p5-IO-stringy
- String.pm : devel/p5-IO-String
- UserAgent.pm : www/p5-libwww
- Scalar.pm : devel/p5-Set-Scalar
- Lite.pm : net/p5-SOAP-Lite
- ParseExcel.pm : textproc/p5-Spreadsheet-ParseExcel
- SVG.pm : textproc/p5-SVG
- Graph.pm : graphics/p5-SVG-Graph
- Harness.pm : devel/p5-Test-Harness
- Shellwords.pm : textproc/p5-Text-Shellwords
- DOM.pm : textproc/p5-XML-DOM
- XPath.pm : textproc/p5-XML-DOM-XPath
- PerlSAX.pm : textproc/p5-libxml
- SAX.pm : textproc/p5-XML-SAX
- Base.pm : textproc/p5-XML-SAX
- Writer.pm : textproc/p5-XML-SAX-Writer
- Twig.pm : textproc/p5-XML-Twig
- Writer.pm : textproc/p5-XML-Writer
- Ace.pm : biology/p5-AcePerl
- Clone.pm : devel/p5-Clone
- C.pm : converters/p5-Convert-Binary-C
- mysql.pm : databases/p5-DBD-mysql
- GD.pm : graphics/p5-GD
- Entities.pm : www/p5-HTML-Parser
- Parser.pm : www/p5-HTML-Parser
- Storable.pm : devel/p5-Storable
- Parser.pm : textproc/p5-XML-Parser
- Build.pm : devel/p5-Module-Build
- perl5.8.9 : lang/perl5.8
- Runtime dependencies:
-
- Wrap.pm : lang/perl5.8
- DB_File.pm : lang/perl5.8
- EntrezGene.pm : biology/p5-Bio-ASN1-EntrezGene
- AutoClass.pm : devel/p5-Class-AutoClass
- ITextWriter.pm : devel/p5-Data-Stag
- SxprWriter.pm : devel/p5-Data-Stag
- XMLWriter.pm : devel/p5-Data-Stag
- SVG.pm : graphics/p5-GD-SVG
- Directed.pm : math/p5-Graph
- Common.pm : www/p5-libwww
- Scalar.pm : devel/p5-IO-stringy
- String.pm : devel/p5-IO-String
- UserAgent.pm : www/p5-libwww
- Scalar.pm : devel/p5-Set-Scalar
- Lite.pm : net/p5-SOAP-Lite
- ParseExcel.pm : textproc/p5-Spreadsheet-ParseExcel
- SVG.pm : textproc/p5-SVG
- Graph.pm : graphics/p5-SVG-Graph
- Harness.pm : devel/p5-Test-Harness
- Shellwords.pm : textproc/p5-Text-Shellwords
- DOM.pm : textproc/p5-XML-DOM
- XPath.pm : textproc/p5-XML-DOM-XPath
- PerlSAX.pm : textproc/p5-libxml
- SAX.pm : textproc/p5-XML-SAX
- Base.pm : textproc/p5-XML-SAX
- Writer.pm : textproc/p5-XML-SAX-Writer
- Twig.pm : textproc/p5-XML-Twig
- Writer.pm : textproc/p5-XML-Writer
- Ace.pm : biology/p5-AcePerl
- Clone.pm : devel/p5-Clone
- C.pm : converters/p5-Convert-Binary-C
- mysql.pm : databases/p5-DBD-mysql
- GD.pm : graphics/p5-GD
- Entities.pm : www/p5-HTML-Parser
- Parser.pm : www/p5-HTML-Parser
- Storable.pm : devel/p5-Storable
- Parser.pm : textproc/p5-XML-Parser
- Build.pm : devel/p5-Module-Build
- perl5.8.9 : lang/perl5.8
- perl5.8.9 : lang/perl5.8
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- N/A
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
Commit | Credits | Log message |
1.5.2 05 Jun 2009 20:38:36
 |
miwi  |
2009-05-31 biology/p5-bioperl-devel: no longer under development
2009-05-31 biology/p5-bioperl-run-devel: no longer under development
2009-06-01 net-p2p/deluge05: use net-p2p/deluge instead
2009-06-03 textproc/gmat: failed to build for a long time, no maintainer and
apparently no users either |
1.5.2 19 Mar 2009 19:29:34
 |
miwi  |
- Mark DEPRECATED (no longer under development)
PR: 132122
Submitted by: Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer) |
1.5.2 07 Mar 2009 19:51:02
 |
skv  |
Rename PERL_VER to PERL_VERSION.
Pointed by: pav |
1.5.2 21 Oct 2008 15:24:46
 |
rafan  |
- Unbreak
PR: ports/128193
Submitted by: Mauricio Herrera Cuadra <mauricio at arareko.net> (maintainer) |
1.5.2 07 Jul 2008 22:57:49
 |
pav  |
- Mark BROKEN: missing cpan dependency (interactive loop) |
1.5.2 06 Jul 2008 23:27:12
 |
lippe  |
- Update to 1.5.2.
PR: ports/124648
Submitted by: Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer)
Reviewed by: lippe
Approved by: gabor (mentor, implicit) |
1.5.1_1 08 Sep 2007 00:53:15
 |
linimon  |
Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.
Work done by: gabor
Sponsored by: Google Summer of Code 2007
Hat: portmgr |
1.5.1_1 19 May 2007 20:32:57
 |
flz  |
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}. |
1.5.1 22 Jan 2006 01:25:24
 |
edwin  |
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry
Approved by: krion@
PR: ports/88711 (related) |
1.5.1 04 Dec 2005 22:12:48
 |
edwin  |
Add conflicts:
CONFLICTS= p5-bioperl-1.[02468]*
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>, Mauricio Herrera Cuadra
<arareko@yahoo.com> |
1.5.1 04 Dec 2005 06:24:05
 |
edwin  |
Fix port: biology/p5-bioperl-devel
This patch adds a LATEST_LINK line in the Makefile to avoid
duplication with the 'p5-bioperl' port in the packages/Latest
directory.
PR: ports/89916
Submitted by: Mauricio Herrera Cuadra <mauricio@arareko.net> |
1.5.1 02 Dec 2005 21:40:12
 |
barner  |
- Re-add p5-bioperl-devel, development version of biology/p5-bioperl
(A collection of Perl modules for bioinformatics)
PR: ports/89497
Submitted by: Mauricio Herrera Cuadra <arareko@yahoo.com> |
0.9.0 08 Aug 2003 03:29:16
 |
kris  |
As announced on May 6, remove the broken p5-bioperl-devel port. |
0.9.0 06 May 2003 23:36:56
 |
kris  |
BROKEN: Broken pkg-plist |
0.9.0 07 Mar 2003 05:56:43
 |
ade  |
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.
E Nomini Patri, E Fili, E Spiritu Sancti. |
20 Sep 2001 16:11:14
    |
wjv  |
- Add NO_LATEST_LINK, which should've been there in the first place. :-( |
20 Aug 2001 13:41:11
    |
wjv  |
- Move the (very) long list of manpages from the port Makefile to a separate
file. |
14 Aug 2001 10:36:36
    |
wjv  |
Add p5-bioperl-devel 0.9.0, a collection of Perl modules for bioinformatics
(developer's release). |