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Port details
py-loompy Work with .loom files for single-cell RNA-seq data
3.0.6 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.0.6Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-09-21 08:05:03
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
Also Listed In: python
License: BSD2CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}loompy>0:biology/py-loompy@${PY_FLAVOR}
To install the port: cd /usr/ports/biology/py-loompy/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-loompy
  • pkg install py38-loompy
NOTE: This is a Python port. Instead of py38-loompy listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py38-loompy
Package flavors (<flavor>: <package>)
  • py38: py38-loompy
distinfo:
Packages (timestamps in pop-ups are UTC):
py36-loompy
ABIlatestquarterly
FreeBSD:11:aarch642.0.14-
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch642.0.14-
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py37-loompy
ABIlatestquarterly
FreeBSD:11:aarch64-3.0.6
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch643.0.6-
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc643.0.6-
 
py38-loompy
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd643.0.63.0.6
FreeBSD:11:armv6--
FreeBSD:11:i3863.0.63.0.6
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-3.0.6
FreeBSD:12:amd643.0.63.0.6
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3863.0.63.0.6
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-3.0.6
FreeBSD:13:amd643.0.63.0.6
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3863.0.63.0.6
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch643.0.6-
FreeBSD:14:amd643.0.6-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3863.0.6-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py38-setuptools>0 : devel/py-setuptools@py38
  2. python3.8 : lang/python38
Runtime dependencies:
  1. py38-numpy>=1.16,1<1.20,1 : math/py-numpy@py38
  2. py38-h5py>0 : science/py-h5py@py38
  3. py38-pandas>0 : math/py-pandas@py38
  4. py38-scipy>0 : science/py-scipy@py38
  5. py38-setuptools>0 : devel/py-setuptools@py38
  6. python3.8 : lang/python38
This port is required by:
for Run
  1. biology/py-orange3-single-cell

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/l/loompy/
  2. https://pypi.org/packages/source/l/loompy/
Collapse this list.

Number of commits found: 10

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  3.0.6
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  3.0.6
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
30 Jan 2021 13:29:58
Original commit files touched by this commit Revision:563407  3.0.6
sunpoet search for other commits by this committer
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+

PR:		250103
16 Jun 2020 02:26:08
Original commit files touched by this commit Revision:539319  3.0.6
yuri search for other commits by this committer
biology/py-loompy: Update 2.0.17 -> 3.0.6
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  2.0.17_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
02 Feb 2019 21:38:49
Original commit files touched by this commit Revision:491995  2.0.17
yuri search for other commits by this committer
biology/py-loompy: Update 2.0.16 -> 2.0.17

Reported by:	portscout
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  2.0.16_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
30 Oct 2018 05:57:44
Original commit files touched by this commit Revision:483451  2.0.16
yuri search for other commits by this committer
biology/py-loompy: Update 2.0.15 -> 2.0.16

Reported by:	portscout
19 Oct 2018 05:01:45
Original commit files touched by this commit Revision:482408  2.0.15
yuri search for other commits by this committer
biology/py-loompy: Update 2.0.14 -> 2.0.15

Reported by:	portscout
21 Sep 2018 08:04:50
Original commit files touched by this commit Revision:480236  2.0.14
yuri search for other commits by this committer
New port: biology/py-loompy: Work with .loom files for single-cell RNA-seq data

Number of commits found: 10