notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

Port details
py-loompy Work with .loom files for single-cell RNA-seq data
2.0.17_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.0.17Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-09-21 08:05:03
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
Also Listed In: python
License: BSD2CLAUSE
Description:
SVNWeb : Homepage

There is no configure plist information for this port.

Dependency lines:
  • py36-loompy>0:biology/py-loompy
To install the port: cd /usr/ports/biology/py-loompy/ && make install clean
To add the package: pkg install py36-loompy
PKGNAME: py36-loompy
Package flavors (<flavor>: <package>)
  • py36: py36-loompy
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py36-setuptools>0 : devel/py-setuptools@py36
  2. python3.6 : lang/python36
Runtime dependencies:
  1. py36-numpy>0 : math/py-numpy@py36
  2. py36-h5py>0 : science/py-h5py@py36
  3. py36-pandas>0 : math/py-pandas@py36
  4. py36-scipy>0 : science/py-scipy@py36
  5. py36-setuptools>0 : devel/py-setuptools@py36
  6. python3.6 : lang/python36
This port is required by:
for Run
  1. biology/py-orange3-single-cell

Configuration Options

USES:

Master Sites:
  1. https://files.pythonhosted.org/packages/source/l/loompy/
  2. https://pypi.org/packages/source/l/loompy/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 6

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
26 Jul 2019 20:46:57
Original commit files touched by this commit  2.0.17_1
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
02 Feb 2019 21:38:49
Original commit files touched by this commit  2.0.17
Revision:491995
yuri search for other commits by this committer
biology/py-loompy: Update 2.0.16 -> 2.0.17

Reported by:	portscout
12 Dec 2018 01:35:36
Original commit files touched by this commit  2.0.16_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
30 Oct 2018 05:57:44
Original commit files touched by this commit  2.0.16
Revision:483451
yuri search for other commits by this committer
biology/py-loompy: Update 2.0.15 -> 2.0.16

Reported by:	portscout
19 Oct 2018 05:01:45
Original commit files touched by this commit  2.0.15
Revision:482408
yuri search for other commits by this committer
biology/py-loompy: Update 2.0.14 -> 2.0.15

Reported by:	portscout
21 Sep 2018 08:04:50
Original commit files touched by this commit  2.0.14
Revision:480236
yuri search for other commits by this committer
New port: biology/py-loompy: Work with .loom files for single-cell RNA-seq data

Number of commits found: 6

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
apache24Apr 02
cactiApr 02
chromiumApr 02
haproxyApr 02
haproxy18Apr 02
haproxy19Apr 02
haproxy21Apr 02
rubygem-json*Apr 02
gnutlsMar 31
postgresql10-serverMar 29
postgresql11-serverMar 29
postgresql12-serverMar 29
postgresql96-serverMar 29
gitlab-ceMar 26
jenkinsMar 25

12 vulnerabilities affecting 110 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2020-04-02 20:42:28


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 39073
Broken 588
Deprecated 1065
Ignore 859
Forbidden 5
Restricted 151
No CDROM 72
Vulnerable 22
Expired 2
Set to expire 1033
Interactive 0
new 24 hours 5
new 48 hours13
new 7 days57
new fortnight112
new month184

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2020 Dan Langille. All rights reserved.