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Port details
py-orange3-single-cell Orange add-on for gene expression of single cell data
0.8.2_3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.8.2_3Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Uses EOL Python 2.7 via misc/orange3
Expired This port expired on: 2021-06-23
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-08-07 07:50:53
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
Also Listed In: python
License: AGPLv3+
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}orange3-single-cell>0:biology/py-orange3-single-cell@${PY_FLAVOR}
To install the port: cd /usr/ports/biology/py-orange3-single-cell/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-orange3-single-cell
  • pkg install py38-orange3-single-cell
NOTE: This is a Python port. Instead of py38-orange3-single-cell listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py38-orange3-single-cell
Package flavors (<flavor>: <package>)
  • py38: py38-orange3-single-cell
distinfo:
Packages (timestamps in pop-ups are UTC):
py36-orange3-single-cell
ABIlatestquarterly
FreeBSD:11:aarch640.8.0-
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch640.8.0-
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py37-orange3-single-cell
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch640.8.2_3-
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py38-orange3-single-cell
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-0.8.2_3
FreeBSD:12:amd640.8.2_30.8.2_3
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.8.2_30.8.2_3
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-0.8.2_3
FreeBSD:13:amd640.8.2_30.8.2_3
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3860.8.2_30.8.2_3
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch640.8.2_3-
FreeBSD:14:amd640.8.2_3-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3860.8.2_3-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake : devel/gmake
  2. py38-sphinx>=0,1 : textproc/py-sphinx@py38
  3. py38-setuptools>0 : devel/py-setuptools@py38
  4. python3.8 : lang/python38
Runtime dependencies:
  1. orange3>0 : misc/orange3
  2. py38-orange3-bioinformatics>0 : biology/py-orange3-bioinformatics@py38
  3. py38-astropy>0 : astro/py-astropy@py38
  4. py38-fastdtw>0 : math/py-fastdtw@py38
  5. py38-joblib>=0.11 : devel/py-joblib@py38
  6. py38-loompy>=2.0.10 : biology/py-loompy@py38
  7. py38-networkx>0 : math/py-networkx@py38
  8. py38-pandas>=0.23 : math/py-pandas@py38
  9. py38-scikit-learn>0 : science/py-scikit-learn@py38
  10. py38-numpy>=1.16,1<1.20,1 : math/py-numpy@py38
  11. py38-setuptools>0 : devel/py-setuptools@py38
  12. python3.8 : lang/python38
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/biolab/orange3-single-cell/tar.gz/0.8.2?dummy=/
Collapse this list.

Number of commits found: 14

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  0.8.2_3
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  0.8.2_3
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
24 Mar 2021 13:34:36
Original commit files touched by this commit Revision:569118  0.8.2_3
rene search for other commits by this committer
Mark ports recursively depending on Python 2.7 for expiration on June 23.

For ports optionally dependending on Python 2.7, just mark those options
as expired. Remove konquerer from the x11/kde-baseapps metaport and bump
its PORTREVISION.

Submitted by:	rene
Reviewed by:	portmgr, adridg, ehaupt, lme, madpilot, pizzamig, se, sunpoet, yuri
Approved by:	portmgr
Differential Revision:	https://reviews.freebsd.org/D28665
30 Jan 2021 13:29:58
Original commit files touched by this commit Revision:563407  0.8.2_3
sunpoet search for other commits by this committer
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+

PR:		250103
14 Jan 2021 14:34:38
Original commit files touched by this commit Revision:561562  0.8.2_3
dbaio search for other commits by this committer
Remove PY_SPHINX from ports using Python 3

Approved by:	 portmgr blanket
Differential Revision:	https://reviews.freebsd.org/D28093
11 May 2020 23:51:58
Original commit files touched by this commit Revision:534966  0.8.2_3
dbaio search for other commits by this committer
Update Sphinx

- Repocopy textproc/py-sphinx to textproc/py-sphinx18

  Update it to 1.8.5 (latest version from 1.8.X).
  This version supports Python 2 and 3.
  Add test target.

- textproc/py-sphinx: Update to 3.0.2

  Python 3 only (3.5+).
  Add test target.

- Mk/Uses/python.mk: Add PY_SPHINX
(Only the first 15 lines of the commit message are shown above View all of this commit message)
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  0.8.2_3
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
16 Jan 2019 11:13:45
Original commit files touched by this commit Revision:490472  0.8.2_2
tijl search for other commits by this committer
Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call
(Only the first 15 lines of the commit message are shown above View all of this commit message)
11 Jan 2019 15:09:35
Original commit files touched by this commit Revision:489980  0.8.2_1
mat search for other commits by this committer
Fixup bulk -a errors with BUILD_ALL_PYTHON_FLAVORS=yes.
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  0.8.2_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
17 Oct 2018 07:31:34
Original commit files touched by this commit Revision:482277  0.8.2
yuri search for other commits by this committer
biology/py-orange3-single-cell: Update 0.8.1 -> 0.8.2

Reported by:	portscout
14 Oct 2018 04:43:08
Original commit files touched by this commit Revision:482023  0.8.1
yuri search for other commits by this committer
biology/py-orange3-single-cell: Update 0.8.0 -> 0.8.1

Reported by:	portscout
08 Aug 2018 23:08:51
Original commit files touched by this commit Revision:476691  0.8.0
yuri search for other commits by this committer
biology/py-orange3-single-cell: Update 0.7.0 -> 0.8.0

Reported by:	portscout
07 Aug 2018 07:50:40
Original commit files touched by this commit Revision:476578  0.7.0
yuri search for other commits by this committer
New port: biology/py-orange3-single-cell: Orange add-on for gene expression of
single cell data

Number of commits found: 14