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Port details
py-h5py General-purpose Python interface to the HDF5 library
2.10.0 science on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.10.0Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-07-13 14:07:48
Last Update: 2019-09-07 23:44:39
SVN Revision: 511444
Also Listed In: python
License: BSD3CLAUSE
Description:
SVNWeb : Homepage

There is no configure plist information for this port.

Dependency lines:
  • py36-h5py>0:science/py-h5py
To install the port: cd /usr/ports/science/py-h5py/ && make install clean
To add the package: pkg install py36-h5py
PKGNAME: py36-h5py
Package flavors (<flavor>: <package>)
  • py36: py36-h5py
  • py27: py27-h5py
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py36-pkgconfig>=0 : devel/py-pkgconfig@py36
  2. py36-numpy>0 : math/py-numpy@py36
  3. py36-six>=0 : devel/py-six@py36
  4. py36-setuptools>0 : devel/py-setuptools@py36
  5. python3.6 : lang/python36
  6. pkgconf>=1.3.0_1 : devel/pkgconf
  7. cython-3.6 : lang/cython@py36
  8. py36-setuptools>0 : devel/py-setuptools@py36
  9. python3.6 : lang/python36
Runtime dependencies:
  1. py36-numpy>0 : math/py-numpy@py36
  2. py36-six>=0 : devel/py-six@py36
  3. py36-setuptools>0 : devel/py-setuptools@py36
  4. python3.6 : lang/python36
Library dependencies:
  1. libhdf5.so : science/hdf5
This port is required by:
for Build
  1. devel/cpp2py
  2. science/py-phono3py
  3. science/py-phonopy
for Run
  1. biology/py-biom-format
  2. biology/py-loompy
  3. devel/cpp2py
  4. math/py-keras
  5. math/py-keras-applications
  6. math/py-pymc3
  7. science/py-OpenFermion
Expand this list (10 items / 3 hidden)
  1. science/py-PyFR
  2. science/py-phono3py
  3. science/py-phonopy
  4. Collapse this list.

Configuration Options

USES:

Master Sites:
  1. https://files.pythonhosted.org/packages/source/h/h5py/
  2. https://pypi.org/packages/source/h/h5py/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 44

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Sep 2019 22:44:39
Original commit files touched by this commit  2.10.0
Revision:511444
sunpoet search for other commits by this committer
Update to 2.10.0

- Sort PLIST

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/2.10.rst
26 Jul 2019 20:46:57
Original commit files touched by this commit  2.9.0_2
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
05 Jan 2019 22:46:54
Original commit files touched by this commit  2.9.0_1
Revision:489412
sunpoet search for other commits by this committer
Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen
01 Jan 2019 20:37:18
Original commit files touched by this commit  2.9.0
Revision:489009
sunpoet search for other commits by this committer
Update to 2.9.0

- Convert PORTDOCS and PORTEXAMPLES to PLIST entries

Changes:	https://github.com/h5py/h5py/releases
12 Dec 2018 01:35:36
Original commit files touched by this commit  2.8.0_2
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
05 Sep 2018 22:05:23
Original commit files touched by this commit  2.8.0_1
Revision:479046
sunpoet search for other commits by this committer
Update science/hdf5 to 1.10.2

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.2#releasenotes
		https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
PR:		231009
Exp-run by:	antoine
20 Jun 2018 17:05:44
Original commit files touched by this commit  2.8.0
Revision:472884
mat search for other commits by this committer
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
05 Jun 2018 18:55:35
Original commit files touched by this commit  2.8.0
Revision:471778
sunpoet search for other commits by this committer
Update to 2.8.0

Changes:	https://github.com/h5py/h5py/releases
25 Apr 2018 16:42:38
Original commit files touched by this commit  2.7.1_1
Revision:468282
amdmi3 search for other commits by this committer
Switch all pypi.python.org WWWs to a new PyPi home pypi.org where
they now redirect to anyway. All new urls checked to return 200,
I've fixed a couple of them in the process.

Approved by:	portmgr blanket, mat
10 Mar 2018 17:46:06
Original commit files touched by this commit  2.7.1_1
Revision:464084
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
25 Feb 2018 05:34:08
Original commit files touched by this commit  2.7.1
Revision:462929
sunpoet search for other commits by this committer
Update to 2.7.1

- Change MASTER_SITES to CHEESESHOP
- Sort BUILD_DEPENDS
- Update pkg-descr
- Add PyPI and GitHub repository to WWW
- Take maintainership
25 Feb 2018 01:24:19
Original commit files touched by this commit  2.7.1
Revision:462889
yuri search for other commits by this committer
science/py-h5py: Update to 2.7.1

Additional port changes:
* Changed to DISTVERSION
* Grouped USExx
* Added USE_PYTHON=concurrent (for docs, examples)
* Removed patching (in post-patch and files/)
* Added stripping
* Updated WWW

Approved by:	tcberner (mentor, implicit)
24 Feb 2018 08:52:27
Original commit files touched by this commit  2.7.0
Revision:462775
tcberner search for other commits by this committer
Give xmj@'s ports back to the pool

PR:		226157
Submitted by:	xmj
30 Nov 2017 15:50:34
Original commit files touched by this commit  2.7.0
Revision:455210  Sanity Test Failure
mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
03 Jun 2017 18:03:40
Original commit files touched by this commit  2.7.0
Revision:442511
tcberner search for other commits by this committer
Update to 2.7.0

PR:		219754
Submitted by:	xmj (maintainer)
30 May 2017 02:56:44
Original commit files touched by this commit  2.6.0_1
Revision:442050
sunpoet search for other commits by this committer
Update science/hdf5 to 1.10.1

- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt
24 Nov 2016 14:57:16
Original commit files touched by this commit  2.6.0
Revision:427022
amdmi3 search for other commits by this committer
- Remove bogus NO_ARCH: this module installs .so files
- Cosmetic fixes

Approved by:	portmgr blanket
15 Jun 2016 09:04:29
Original commit files touched by this commit  2.6.0
Revision:416918
tz search for other commits by this committer
Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net

PR:           210265
Submitted by: Johannes Jost Meixner (johannes@perceivon.net)
Approved by:  pi (mentor)
25 May 2016 16:54:31
Original commit files touched by this commit  2.6.0
Revision:415848
pi search for other commits by this committer
Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org

PR:		209746
Submitted by:	xmj
25 May 2016 16:32:24
Original commit files touched by this commit  2.6.0
Revision:415847
pi search for other commits by this committer
science/py-h5py: 2.5.0 -> 2.6.0

PR:		209630
Submitted by:	Johannes Jost Meixner <xmj@chaot.net> (maintainer)
20 Apr 2016 20:42:40
Original commit files touched by this commit  2.5.0_1
Revision:413700
sunpoet search for other commits by this committer
- Update to 1.10.0
- Add LICENSE_FILE
- Remove outdated PORTSCOUT
- Re-enable SZIP option by default: it was changed unintentionally in r398300

Changes:	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt
		https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
01 Apr 2016 14:25:18
Original commit files touched by this commit  2.5.0
Revision:412349
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
11 Dec 2015 20:19:10
Original commit files touched by this commit  2.5.0
Revision:403555
miwi search for other commits by this committer
- Update to 2.5.0
- Switch to options helper
- Switch to do-test

PR:		205137
Submitted by:	maintainer
Approved by:	mat (mentor)
Differential Revision:	D4507
24 May 2015 08:10:29
Original commit files touched by this commit  2.4.0_2
Revision:387255
sunpoet search for other commits by this committer
- Update to 1.8.15
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.15-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
07 May 2015 17:41:24
Original commit files touched by this commit  2.4.0_1
Revision:385645
mat search for other commits by this committer
Update ports in the s* categores to not use GH_COMMIT.

With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
18 Jan 2015 10:39:51
Original commit files touched by this commit  2.4.0_1
Revision:377318
sunpoet search for other commits by this committer
- Update to 1.8.14
- Update MASTER_SITES
- Use INSTALL_TARGET=install-strip instead of
MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP}
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
13 Jan 2015 11:23:26
Original commit files touched by this commit  2.4.0
Revision:376913
xmj search for other commits by this committer
science/py-h5py: upgrade to 2.4.0

- upgrade to 2.4.0

Differential Revision:	https://reviews.freebsd.org/D1456
Approved by:	koobs (mentor)
07 Dec 2014 15:17:10
Original commit files touched by this commit  2.3.0_1
Revision:374211
feld search for other commits by this committer
Update "BSD" license in science category
24 Oct 2014 16:50:43
Original commit files touched by this commit  2.3.0_1
Revision:371453
mva search for other commits by this committer
- Convert ports of science/ and security to new USES=python

Approved by:	portmgr (implicit)
10 Sep 2014 20:50:37
Original commit files touched by this commit  2.3.0_1
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
09 Jun 2014 05:07:54
Original commit files touched by this commit  2.3.0
Revision:357104
xmj search for other commits by this committer
science/py-h5py: Upgrade to 2.3.0

- Update to 2.3.0
- Remove BROKEN mark

Approved by:	swills (mentor)
06 Jun 2014 20:40:26
Original commit files touched by this commit  2.2.1_2
Revision:356844
antoine search for other commits by this committer
Mark BROKEN: Does not build

cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include
-I/usr/local/include/python2.7 -c h5py/h5fd.c -o
build/temp.freebsd-10.0-RELEASE-p3-amd64-2.7/h5py/h5fd.o
In file included from h5py/h5fd.c:259:
In file included from h5py/api_compat.h:21:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "          "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
h5py/h5fd.c:857:39: error: use of undeclared identifier 'H5FD_MPIPOSIX'
  __pyx_t_1 = __Pyx_PyInt_to_py_hid_t(H5FD_MPIPOSIX); if (unlikely(!__pyx_t_1))
{__pyx_filename = __pyx_f[0]; __pyx_lineno = 34; __pyx_clineno = __LINE__; goto
__pyx_L1_error;}
                                      ^
1 warning and 1 error generated.
error: command 'cc' failed with exit status 1
*** Error code 1

Reported by:	pkg-fallout
03 May 2014 00:55:30
Original commit files touched by this commit  2.2.1_2
Revision:352854
sunpoet search for other commits by this committer
- Update to 1.8.12 (from science/hdf5-18)
- Add LICENSE
- Convert to new LIB_DEPENDS format
- Convert to new options helper
- Use NOT_FOR_ARCHS
- Strip shared library
- Remove deprecated PTHREAD_*
- Use MAKE_CMD
- Bump PORTREVISION for science/hdf5 shlib change [1]

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Approved by:	portmgr (bapt) [1]
10 Mar 2014 20:55:22
Original commit files touched by this commit  2.2.1_1
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
13 Dec 2013 19:59:42
Original commit files touched by this commit  2.2.1
Revision:336372
wg search for other commits by this committer
science/py-h5py: update to 2.2.1

- Update to 2.2.1
- Add EXAMPLES

PR:		ports/184746
Submitted by:	maintainer
13 Nov 2013 21:28:30
Original commit files touched by this commit  2.2.0
Revision:333728
wg search for other commits by this committer
science/py-h5py: update to 2.2.0

- Update to 2.2.0
- Add LICENSE (BSD)
- Add DOCS
- Pass maintainership to submitter

PR:		ports/183519
Submitted by:	Johannes Jost Meixner <xmj chaot.net>
Approved by:	maintainer (timeout, 2 weeks, 3 times)
30 Oct 2013 21:34:17
Original commit files touched by this commit  2.1.1
Revision:332177
nemysis search for other commits by this committer
- Update to 2.1.1
- Remove leading article from COMMENT
- Use default dependency for science/hdf5-18
- Add patch

PR:		ports/181483
Submitted by:	Johannes Meixner <xmj@chaot.net>
Approved by:	wg (mentor)
26 Oct 2013 00:52:36
Original commit files touched by this commit  1.2.1_3
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 22:48:31
Original commit files touched by this commit  1.2.1_2
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
13 Aug 2013 11:59:54
Original commit files touched by this commit  1.2.1_2
Revision:324659
koobs search for other commits by this committer
science/py-h5py: Add OPTION support for HDF5 1.8

- Add OPTION to use science/hdf5-18 instead of science/hdf5

PR:		ports/179572
Submitted by:	Johannes Meixner <xmj@chaot.net>
Approved by:	maintainer timeout (8 weeks)
03 Jul 2011 13:22:25
Original commit files touched by this commit  1.2.1_1

ohauer search for other commits by this committer
 - remove MD5
01 Feb 2010 11:27:59
Original commit files touched by this commit  1.2.1_1

lwhsu search for other commits by this committer
- Add py-numpy into RUN_DEPENDS

PR:             ports/143419
Submitted by:   TAOKA Fumiyoshi <fmysh AT iijmio-mail.jp> (maintainer)
24 Sep 2009 12:49:40
Original commit files touched by this commit  1.2.1

wen search for other commits by this committer
- Update to 1.2.1

PR:             ports/138984
Submitted by:   wenheping@gmail.com(myself)
Approved by:    maintainer,     jadawin(co-mentor)
Feature safe:   yes
13 Jul 2009 14:07:16
Original commit files touched by this commit  1.2.0

lwhsu search for other commits by this committer
Add py-h5py 1.2.0, a general-purpose Python interface to the HDF5
library.

PR:             ports/136096
Submitted by:   TAOKA Fumiyoshi

Number of commits found: 44

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