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Port details
py-pymc Markov Chain Monte Carlo Sampling Toolkit
2.3.6,1 math on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 14 Dec 2008 10:38:39
Also Listed In: python
License: AFL
Bayesian estimation, particularly using Markov chain Monte Carlo (MCMC), is an
increasingly relevant approach to statistical estimation. However, few
statistical software packages implement MCMC samplers, and they are non-trivial
to code by hand. pymc is a python package that implements the
Metropolis-Hastings algorithm as a python class, and is extremely flexible and
applicable to a large suite of problems.  pymc includes methods for summarizing
output, plotting, goodness-of-fit and convergence diagnostics.

WWW: http://pypi.python.org/pypi/pymc/
SVNWeb : Homepage : PortsMon
There is no configure plist information for this port

To install the port: cd /usr/ports/math/py-pymc/ && make install clean
To add the package: pkg install py27-pymc

PKGNAME: py27-pymc

distinfo:

SHA256 (pymc-2.3.6.tar.gz) = e287a7d1821d55a41079fe0289d70b6f2ea905f4c6b1a9207bdf35425bdcae37
SIZE (pymc-2.3.6.tar.gz) = 348363


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. numeric.py : math/py-numpy@py27
  2. py27-matplotlib>0 : math/py-matplotlib@py27
  3. py27-scipy>0 : science/py-scipy@py27
  4. py27-setuptools>0 : devel/py-setuptools@py27
  5. python2.7 : lang/python27
Runtime dependencies:
  1. numeric.py : math/py-numpy@py27
  2. py27-matplotlib>0 : math/py-matplotlib@py27
  3. py27-scipy>0 : science/py-scipy@py27
  4. py27-setuptools>0 : devel/py-setuptools@py27
  5. python2.7 : lang/python27
Library dependencies:
  1. liblapack.so : math/lapack
  2. libblas.so : math/blas
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
python:2.7

Master Sites:
  1. https://files.pythonhosted.org/packages/source/p/pymc/
  2. https://pypi.python.org/packages/source/p/pymc/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 17

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
30 Nov 2017 15:50:34
Original commit files touched by this commit  2.3.6,1
Revision:455210  Sanity Test Failure
mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
01 Apr 2016 14:16:20
Original commit files touched by this commit  2.3.6,1
Revision:412348
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight
25 Dec 2015 06:05:17
Original commit files touched by this commit  2.3.6,1
Revision:404401
wen search for other commits by this committer
- Update to 2.3.6 [1]
- Update my email

PR:		205561 [1]
Submitted by:	yuri@rawbw.com [1]
03 Sep 2015 10:28:16
Original commit files touched by this commit  2.3.3,1
Revision:395944
amdmi3 search for other commits by this committer
- Remove everything related to DOCS as not documentation is actually installed
- Sort USE_PYTHON

PR:		200620
Submitted by:	amdmi3
Approved by:	maintainer timeout (wenheping@gmail.com, 3 months)
23 Oct 2014 15:23:27
Original commit files touched by this commit  2.3.3,1
Revision:371398
demon search for other commits by this committer
Fix compilation after recent numpy patch.

Patch by thierry@FreeBSD.org, pointed out by antoine.
16 Oct 2014 22:43:57
Original commit files touched by this commit  2.3.3,1
Revision:371025
wen search for other commits by this committer
- Update to 2.3.3
10 Sep 2014 20:50:37
Original commit files touched by this commit  2.3_2,1
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
22 Aug 2014 07:20:30
Original commit files touched by this commit  2.3_1,1
Revision:365614
antoine search for other commits by this committer
Canonicalize a few LICENSE_PERMS

With hat:	portmgr
10 Mar 2014 20:55:22
Original commit files touched by this commit  2.3_1,1
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
06 Dec 2013 15:42:33
Original commit files touched by this commit  2.3,1
Revision:335765
mat search for other commits by this committer
- Update to 2.3,1
- Add license
- Add matplotlib dependency as per docs/INSTALL.rst
- Add DOCS option
- Add stage support

maintainer timeout.

PR:		ports/183951
Submitted by:	Johannes Jost Meixner
20 Nov 2013 20:51:25
Original commit files touched by this commit  2.0_1,1
Revision:334452
sunpoet search for other commits by this committer
- Update WWW:
  - http://cheeseshop.python.org/ -> https://pypi.python.org/
  - http://pypi.python.org/ -> https://pypi.python.org/

With hat:	python
Approved by:	bapt (portmgr)
26 Oct 2013 00:52:36
Original commit files touched by this commit  2.0_1,1
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 20:55:06
Original commit files touched by this commit  2.0,1
Revision:327746
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
math)
21 Jan 2012 17:40:15
Original commit files touched by this commit  2.0,1
eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
20 Mar 2011 12:54:45
Original commit files touched by this commit  2.0,1
miwi search for other commits by this committer
- Get Rid MD5 support
05 Mar 2009 18:56:03
Original commit files touched by this commit  2.0,1
lwhsu search for other commits by this committer
- Update to 2.0

PR:             ports/130225
Submitted by:   Wen Heping <wenheping AT gmail.com> (maintainer)
14 Dec 2008 10:37:39
Original commit files touched by this commit  2.0r1
miwi search for other commits by this committer
Bayesian estimation, particularly using Markov chain Monte
Carlo (MCMC), is an increasingly relevant approach to
statistical estimation. However, few statistical software
packages implement MCMC samplers, and they are non-trivial
 to code by hand. pymc is a python package that implements
the Metropolis-Hastings algorithm as a python class, and is
extremely flexible and applicable to a large suite of problems.
pymc includes methods for summarizing output, plotting,
goodness-of-fit and convergence diagnostics.

WWW:    http://pypi.python.org/pypi/pymc/

PR:             ports/129567
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 17

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