Ports marked with a ^* actually reside within another category but have science listed as a secondary category.

arbor Multi-compartment neural network simulation library

0.10.1,1 0.10.1,1Version of this port present on the latest quarterly branch.

BROKEN: compilation fails with clang-19, see https://github.com/arbor-sim/arbor/issues/2424
IGNORE: is marked as broken: compilation fails with clang-19, see https://github.com/arbor-sim/arbor/issues/2424

Maintainer: yuri@FreeBSD.org

Port Added: 2025-11-02 18:21:05

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• arbor>0:science/arbor

ascent Visualization and analysis runtime for multi-physics HPC simulations

0.9.5 0.9.5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-18 18:27:08

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ascent-visualizer>0:science/ascent

csvtk Cross-platform and ultrafast toolkit for CSV/TSV processing

0.34.0_3 0.34.0_3Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2025-11-01 15:53:31

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• csvtk>0:science/csvtk

gramps GTK3-based genealogy program

6.0.6 6.0.6Version of this port present on the latest quarterly branch.

Maintainer: eduardo@FreeBSD.org

Port Added: 2025-11-09 11:27:04

Also Listed In: gnome python

License: GPLv2+

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• gramps>0:science/gramps

molgif Tool to create GIF animations of molecules

g20180108_31 g20180108_31Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-11-01 15:53:31

License: ISCL

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• molgif>0:science/molgif

ncbi-cxx-toolkit NCBI C++ Toolkit

29.6.0^* Package not present on quarterly.This port was created during this quarter. It will be in the next quarterly branch but not the current one.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-13 18:42:09

Also Listed In: biology devel

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-cxx-toolkit>0:biology/ncbi-cxx-toolkit

pcmsolver API for the Polarizable Continuum Model

1.3.0_2 1.3.0_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-15 03:45:04

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• pcmsolver>0:science/pcmsolver

py-arbor Multi-compartment neural network simulation library

0.11.0 0.11.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-11-02 18:24:05

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}arbor>0:science/py-arbor@${PY_FLAVOR}

py-scikit-sparse Sparse matrix package

0.4.16_2 0.4.16_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-29 07:33:09

Also Listed In: python

License: BSD2CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}scikit-sparse>0:science/py-scikit-sparse@${PY_FLAVOR}

qt6-quick3dphysics High-level API for physics simulation

6.9.3 6.9.3Version of this port present on the latest quarterly branch.

Maintainer: kde@FreeBSD.org

Port Added: 2025-10-04 04:15:09

License: LGPL21

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• qt6-quick3dphysics>0:science/qt6-quick3dphysics

tinker General purpose molecular modelling package

25.5.2 25.5.2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-14 02:18:08

License: TINKER

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• tinker>0:science/tinker

votca CSG and XTP: libraries for atomistic simulations

2025.1 2025.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-13 05:36:06

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• votca>0:science/votca