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Port details
afni Advanced Functional Neuro Imaging
19.1.20_3 science on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port 19.1.20Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-01-25 17:37:44
Last Update: 2019-09-28 11:56:15
SVN Revision: 513115
Also Listed In: biology graphics perl5 python
License: GPLv2
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (1862 items)
  1. /usr/local/share/licenses/afni-19.1.20_3/catalog.mk
  2. /usr/local/share/licenses/afni-19.1.20_3/LICENSE
  3. /usr/local/share/licenses/afni-19.1.20_3/GPLv2
  4. bin/1dApar2mat
  5. bin/1dAstrip
  6. bin/1dBandpass
  7. bin/1dBport
  8. bin/1dCorrelate
  9. bin/1dDW_Grad_o_Mat
  10. bin/1dDW_Grad_o_Mat++
  11. bin/1dFlagMotion
  12. bin/1dGC.R
  13. bin/1dMarry
  14. bin/1dNLfit
  15. bin/1dRplot
  16. bin/1dRplot.R
  17. bin/1dSEM
  18. bin/1dSEMr.R
  19. bin/1dSVAR.R
  20. bin/1dTsort
  21. bin/1dUpsample
  22. bin/1d_tool.py
  23. bin/1dcat
  24. bin/1ddot
  25. bin/1deval
  26. bin/1dfft
  27. bin/1dgenARMA11
  28. bin/1dgrayplot
  29. bin/1dmatcalc
  30. bin/1dnorm
  31. bin/1dplot
  32. bin/1dplot.py
  33. bin/1dsound
  34. bin/1dsum
  35. bin/1dsvd
  36. bin/1dtranspose
  37. bin/24swap
  38. bin/2dImReg
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  40. bin/2swap
  41. bin/3dABoverlap
  42. bin/3dAFNIto3D
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  44. bin/3dAFNItoMINC
  45. bin/3dAFNItoNIFTI
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  51. bin/3dANOVA3
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  60. bin/3dAutobox
  61. bin/3dAutomask
  62. bin/3dBRAIN_VOYAGERtoAFNI
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  64. bin/3dBlurInMask
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  70. bin/3dClipLevel
  71. bin/3dClustCount
  72. bin/3dClustSim
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  78. bin/3dDTeig
  79. bin/3dDTtoDWI
  80. bin/3dDTtoNoisyDWI
  81. bin/3dDWItoDT
  82. bin/3dDWUncert
  83. bin/3dDeconvolve
  84. bin/3dDeconvolve_f
  85. bin/3dDegreeCentrality
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  87. bin/3dDetrend
  88. bin/3dECM
  89. bin/3dEigsToDT
  90. bin/3dEmpty
  91. bin/3dEntropy
  92. bin/3dErrtsCormat
  93. bin/3dExchange
  94. bin/3dExtractGroupInCorr
  95. bin/3dExtrema
  96. bin/3dFDR
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  98. bin/3dFWHM
  99. bin/3dFWHMx
  100. bin/3dFourier
  101. bin/3dFriedman
  102. bin/3dGC.R
  103. bin/3dGenFeatureDist
  104. bin/3dGenPriors
  105. bin/3dGetrow
  106. bin/3dGrayplot
  107. bin/3dGroupInCorr
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  109. bin/3dICA.R
  110. bin/3dICC.R
  111. bin/3dICC_REML.R
  112. bin/3dIntracranial
  113. bin/3dInvFMRI
  114. bin/3dKS.R
  115. bin/3dKruskalWallis
  116. bin/3dLFCD
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  120. bin/3dLSS
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  122. bin/3dLocalBistat
  123. bin/3dLocalHistog
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  125. bin/3dLocalSVD
  126. bin/3dLocalstat
  127. bin/3dLombScargle
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  132. bin/3dMINCtoAFNI
  133. bin/3dMSE
  134. bin/3dMVM
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  136. bin/3dMVM_validator
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  145. bin/3dNetCorr
  146. bin/3dNormalityTest
  147. bin/3dNotes
  148. bin/3dNwarpAdjust
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  150. bin/3dNwarpCalc
  151. bin/3dNwarpCat
  152. bin/3dNwarpFuncs
  153. bin/3dNwarpXYZ
  154. bin/3dOverlap
  155. bin/3dPAR2AFNI.pl
  156. bin/3dPFM
  157. bin/3dPFM.R
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  160. bin/3dPolyfit
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  164. bin/3dREMLfit
  165. bin/3dROIMaker
  166. bin/3dROIstats
  167. bin/3dRSFC
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  170. bin/3dReHo
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  172. bin/3dRetinoPhase
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  174. bin/3dRprogDemo
  175. bin/3dRprogDemo.R
  176. bin/3dSeg
  177. bin/3dSetupGroupInCorr
  178. bin/3dSharpen
  179. bin/3dSignatures
  180. bin/3dSignatures.R
  181. bin/3dSkullStrip
  182. bin/3dSliceNDice
  183. bin/3dSpaceTimeCorr
  184. bin/3dSpatNorm
  185. bin/3dStatClust
  186. bin/3dSurf2Vol
  187. bin/3dSurfMask
  188. bin/3dSynthesize
  189. bin/3dTORTOISEtoHere
  190. bin/3dTRfix
  191. bin/3dTSgen
  192. bin/3dTagalign
  193. bin/3dTcat
  194. bin/3dTcorr1D
  195. bin/3dTcorrMap
  196. bin/3dTcorrelate
  197. bin/3dTfilter
  198. bin/3dTfitter
  199. bin/3dThreetoRGB
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  213. bin/3dUndump
  214. bin/3dUnifize
  215. bin/3dUniformize
  216. bin/3dUpsample
  217. bin/3dVecRGB_to_HSL
  218. bin/3dVol2Surf
  219. bin/3dWarp
  220. bin/3dWarpDrive
  221. bin/3dWavelets
  222. bin/3dWilcoxon
  223. bin/3dWinsor
  224. bin/3dXClustSim
  225. bin/3dXYZcat
  226. bin/3dZcat
  227. bin/3dZcutup
  228. bin/3dZeropad
  229. bin/3dZipperZapper
  230. bin/3dZregrid
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  232. bin/3daxialize
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  239. bin/3ddot
  240. bin/3ddot_beta
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  242. bin/3dedge3
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  250. bin/3dmaskSVD
  251. bin/3dmask_tool
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  255. bin/3dmatmult
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  263. bin/3drefit
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  273. bin/3dvolreg
  274. bin/4swap
  275. bin/@1dDiffMag
  276. bin/@2dwarper
  277. bin/@2dwarper.Allin
  278. bin/@4Daverage
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  281. bin/@AfniEnv
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  283. bin/@AfniOrientSign
  284. bin/@Align_Centers
  285. bin/@Atlasize
  286. bin/@Center_Distance
  287. bin/@CheckForAfniDset
  288. bin/@ClustExp_CatLab
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  290. bin/@CommandGlobb
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  292. bin/@DTI_studio_reposition
  293. bin/@DeblankFileNames
  294. bin/@DiceMetric
  295. bin/@DoPerRoi.py
  296. bin/@DriveAfni
  297. bin/@DriveSuma
  298. bin/@ElectroGrid
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  302. bin/@FindAfniDsetPath
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  304. bin/@FullPath
  305. bin/@GetAfniBin
  306. bin/@GetAfniDims
  307. bin/@GetAfniID
  308. bin/@GetAfniOrient
  309. bin/@GetAfniPrefix
  310. bin/@GetAfniRes
  311. bin/@GetAfniView
  312. bin/@GradFlipTest
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  314. bin/@Install_AfniRetinoDemo
  315. bin/@Install_ClustScat_Demo
  316. bin/@Install_D99_macaque
  317. bin/@Install_DBSproc
  318. bin/@Install_FATCAT_DEMO
  319. bin/@Install_FATCAT_DEMO2
  320. bin/@Install_FATMVM_DEMO
  321. bin/@Install_InstaCorr_Demo
  322. bin/@Install_MEICA_Demo
  323. bin/@Install_NIH_Marmoset
  324. bin/@Install_RSFMRI_Motion_Group_Demo
  325. bin/@Install_TSrestMovieDemo
  326. bin/@IsoMasks
  327. bin/@MakeLabelTable
  328. bin/@NoExt
  329. bin/@NoPound
  330. bin/@NoisySkullStrip
  331. bin/@Purify_1D
  332. bin/@Quiet_Talkers
  333. bin/@ROI_Corr_Mat
  334. bin/@R_funclist
  335. bin/@RenamePanga
  336. bin/@Reorder
  337. bin/@RetinoProc
  338. bin/@SSwarper
  339. bin/@SUMA_AlignToExperiment
  340. bin/@SUMA_FSvolToBRIK
  341. bin/@SUMA_Make_Spec_Caret
  342. bin/@SUMA_Make_Spec_FS
  343. bin/@SUMA_Make_Spec_SF
  344. bin/@SUMA_renumber_FS
  345. bin/@ScaleVolume
  346. bin/@ScriptCheck
  347. bin/@Shift_Volume
  348. bin/@ShowDynamicRange
  349. bin/@SkullStrip_TouchUp
  350. bin/@Spharm.examples
  351. bin/@SurfSmooth.HEAT_07.examples
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  353. bin/@TimeDiff
  354. bin/@ToRAI
  355. bin/@UpdateAfni
  356. bin/@VolCenter
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  358. bin/@afni_R_package_install
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  366. bin/@chauffeur_afni
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  374. bin/@djunct_4d_imager
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  376. bin/@djunct_calc_mont_dims.py
  377. bin/@djunct_combine_str.py
  378. bin/@djunct_dwi_selector.tcsh
  379. bin/@djunct_edgy_align_check
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  381. bin/@djunct_json_value.py
  382. bin/@djunct_montage_coordinator
  383. bin/@djunct_select_str.py
  384. bin/@djunct_slice_space
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  417. bin/@xyz_to_ijk
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  419. bin/AFNI_atlas_spaces.niml
  420. bin/AFNI_version.txt
  421. bin/AFNIio.R
  422. bin/AFNIplot.R
  423. bin/AlphaSim
  424. bin/AnalyzeTrace
  425. bin/BayesianGroupAna.R
  426. bin/BayesianGroupAna.py
  427. bin/BrainSkin
  428. bin/ClustExp_HistTable.py
  429. bin/ClustExp_StatParse.py
  430. bin/CompareSurfaces
  431. bin/ConvertDset
  432. bin/ConvertSurface
  433. bin/ConvexHull
  434. bin/CreateIcosahedron
  435. bin/DTIStudioFibertoSegments
  436. bin/Dimon
  437. bin/Dimon1
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  439. bin/ExamineXmat
  440. bin/ExamineXmat.R
  441. bin/FATCAT_matplot
  442. bin/FD2
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  444. bin/FSread_annot
  445. bin/GLTsymtest
  446. bin/HalloSuma
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  456. bin/RBA
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  462. bin/SUMA_glxdino
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  464. bin/SUMA_pixmap2eps
  465. bin/SampBias
  466. bin/ScaleToMap
  467. bin/Signatures.R
  468. bin/SpharmDeco
  469. bin/SpharmReco
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  471. bin/SurfClust
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  473. bin/SurfDsetInfo
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  477. bin/SurfMeasures
  478. bin/SurfPatch
  479. bin/SurfQual
  480. bin/SurfRetinoMap
  481. bin/SurfSmooth
  482. bin/SurfToSurf
  483. bin/SurfaceMetrics
  484. bin/Vecwarp
  485. bin/Xphace
  486. bin/abids_json_info.py
  487. bin/abids_json_tool.py
  488. bin/abids_lib.py
  489. bin/abids_tool.py
  490. bin/abut
  491. bin/adwarp
  492. bin/afni
  493. bin/afni_base.py
  494. bin/afni_check_omp
  495. bin/afni_fs_aparc+aseg_2000.txt
  496. bin/afni_fs_aparc+aseg_2009.txt
  497. bin/afni_history
  498. bin/afni_open
  499. bin/afni_proc.py
  500. bin/afni_restproc.py
  501. bin/afni_run_R
  502. bin/afni_skeleton.py
  503. bin/afni_system_check.py
  504. bin/afni_util.py
  505. bin/afni_vcheck
  506. bin/afni_xmat.py
  507. bin/aiv
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  509. bin/apqc_make_html.py
  510. bin/apqc_make_tcsh.py
  511. bin/apsearch
  512. bin/ask_me.py
  513. bin/auto_warp.py
  514. bin/byteorder
  515. bin/cat_matvec
  516. bin/ccalc
  517. bin/cifti_tool
  518. bin/column_cat
  519. bin/count
  520. bin/db_mod.py
  521. bin/dcm2niix_afni
  522. bin/demo.fixed.niml.do
  523. bin/demo.mobile.niml.do
  524. bin/demoExpt.py
  525. bin/dicom_hdr
  526. bin/dicom_hinfo
  527. bin/dicom_to_raw
  528. bin/eg_main_chrono.py
  529. bin/ent16
  530. bin/fat_lat_csv.py
  531. bin/fat_mat_sel.py
  532. bin/fat_mvm_gridconv.py
  533. bin/fat_mvm_prep.py
  534. bin/fat_mvm_review.py
  535. bin/fat_mvm_scripter.py
  536. bin/fat_proc_align_anat_pair
  537. bin/fat_proc_axialize_anat
  538. bin/fat_proc_connec_vis
  539. bin/fat_proc_convert_dcm_anat
  540. bin/fat_proc_convert_dcm_dwis
  541. bin/fat_proc_decmap
  542. bin/fat_proc_dwi_to_dt
  543. bin/fat_proc_filter_dwis
  544. bin/fat_proc_grad_plot
  545. bin/fat_proc_imit2w_from_t1w
  546. bin/fat_proc_map_to_dti
  547. bin/fat_proc_select_vols
  548. bin/fat_roi_row.py
  549. bin/fdrval
  550. bin/fftest
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  554. bin/from3d
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  558. bin/gen_group_command.py
  559. bin/gen_ss_review_scripts.py
  560. bin/gen_ss_review_table.py
  561. bin/get_afni_model_PRF
  562. bin/get_afni_model_PRF_6
  563. bin/get_afni_model_PRF_6_BAD
  564. bin/gifti_tool
  565. bin/gui_uber_align_test.py
  566. bin/gui_uber_skel.py
  567. bin/gui_uber_subj.py
  568. bin/gui_uber_ttest.py
  569. bin/gui_xmat.py
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  571. bin/im2niml
  572. bin/images_equal
  573. bin/imand
  574. bin/imaver
  575. bin/imcalc
  576. bin/imcat
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  585. bin/inspec
  586. bin/lib_RR_plot.py
  587. bin/lib_afni1D.py
  588. bin/lib_apqc_html.py
  589. bin/lib_apqc_html_css.py
  590. bin/lib_apqc_html_helps.py
  591. bin/lib_apqc_io.py
  592. bin/lib_apqc_tcsh.py
  593. bin/lib_decay_timing.py
  594. bin/lib_dti_sundry.py
  595. bin/lib_fat_Rfactor.py
  596. bin/lib_fat_funcs.py
  597. bin/lib_fat_plot_sel.py
  598. bin/lib_matplot.py
  599. bin/lib_plot_1D.py
  600. bin/lib_qt_gui.py
  601. bin/lib_rand_timing.py
  602. bin/lib_realtime.py
  603. bin/lib_ss_review.py
  604. bin/lib_subjects.py
  605. bin/lib_surf_clustsim.py
  606. bin/lib_system_check.py
  607. bin/lib_textdata.py
  608. bin/lib_timing.py
  609. bin/lib_uber_align.py
  610. bin/lib_uber_skel.py
  611. bin/lib_uber_subject.py
  612. bin/lib_uber_ttest.py
  613. bin/lib_vars_object.py
  614. bin/lib_wx.py
  615. bin/lpc_align.py
  616. bin/make_pq_script.py
  617. bin/make_random_timing.py
  618. bin/make_stim_times.py
  619. bin/map_TrackID
  620. bin/mayo_analyze
  621. bin/meica.py
  622. bin/module_test_lib.py
  623. bin/mritopgm
  624. bin/mycat
  625. bin/myget
  626. bin/neuro_deconvolve.py
  627. bin/nicat
  628. bin/niccc
  629. bin/nifti1_tool
  630. bin/nifti_tool
  631. bin/niml_feedme
  632. bin/niprobe
  633. bin/nsize
  634. bin/option_list.py
  635. bin/p2dsetstat
  636. bin/parse_fs_lt_log.py
  637. bin/plugout_drive
  638. bin/plugout_ijk
  639. bin/plugout_tt
  640. bin/plugout_tta
  641. bin/prompt_popup
  642. bin/prompt_user
  643. bin/python_module_test.py
  644. bin/quick.alpha.vals.py
  645. bin/quickspec
  646. bin/quotize
  647. bin/rPkgsInstall
  648. bin/rPkgsInstall.R
  649. bin/read_matlab_files.py
  650. bin/realtime_receiver.py
  651. bin/rmz
  652. bin/rotcom
  653. bin/rtfeedme
  654. bin/serial_helper
  655. bin/sfim
  656. bin/siemens_vision
  657. bin/slow_surf_clustsim.py
  658. bin/smooth.R
  659. bin/sqwave
  660. bin/stimband
  661. bin/strblast
  662. bin/suma
  663. bin/suma_change_spec
  664. bin/tedana_wrapper.py
  665. bin/tfim
  666. bin/timing_tool.py
  667. bin/to3d
  668. bin/tokens
  669. bin/uber_align_test.py
  670. bin/uber_proc.py
  671. bin/uber_skel.py
  672. bin/uber_subject.py
  673. bin/uber_ttest.py
  674. bin/ui_xmat.py
  675. bin/unWarpEPI.py
  676. bin/uniq_images
  677. bin/waver
  678. bin/whereami
  679. bin/whirlgif
  680. bin/xmat_tool.py
  681. etc/mri/afni.cshrc
  682. etc/mri/afni.profile
  683. include/afni/3ddata.h
  684. include/afni/AFNI_label.h
  685. include/afni/Amalloc.h
  686. include/afni/Aomp.h
  687. include/afni/afni_environ.h
  688. include/afni/afni_suma.h
  689. include/afni/afni_warp.h
  690. include/afni/coxplot.h
  691. include/afni/cs.h
  692. include/afni/cs_qsort_small.h
  693. include/afni/cs_sort_template.h
  694. include/afni/debugtrace.h
  695. include/afni/editvol.h
  696. include/afni/eispack.h
  697. include/afni/f2c.h
  698. include/afni/killer.h
  699. include/afni/list_struct.h
  700. include/afni/machdep.h
  701. include/afni/mcw_glob.h
  702. include/afni/mcw_malloc.h
  703. include/afni/misc_math.h
  704. include/afni/mri_dicom_stuff.h
  705. include/afni/mri_warpfield.h
  706. include/afni/mrilib.h
  707. include/afni/multivector.h
  708. include/afni/nifti1.h
  709. include/afni/nifti2_io.h
  710. include/afni/nifticdf.h
  711. include/afni/niml.h
  712. include/afni/r_idisp.h
  713. include/afni/r_misc.h
  714. include/afni/r_new_resam_dset.h
  715. include/afni/rcmat.h
  716. include/afni/tagset.h
  717. include/afni/thd_atlas.h
  718. include/afni/thd_compress.h
  719. include/afni/thd_iochan.h
  720. include/afni/thd_maker.h
  721. include/afni/thd_ttatlas_CA_EZ.h
  722. include/afni/thd_ttatlas_query.h
  723. include/afni/vecmat.h
  724. include/afni/vol2surf.h
  725. include/afni/znzlib.h
  726. lib/afni/R_io.so
  727. lib/afni/libGLws.a
  728. lib/afni/libSUMA.a
  729. lib/afni/libcoxplot.a
  730. lib/afni/libmri.a
  731. lib/afni/libmrix.a
  732. lib/afni/model_beta.so
  733. lib/afni/model_constant.so
  734. lib/afni/model_conv_PRF.so
  735. lib/afni/model_conv_PRF_6.so
  736. lib/afni/model_conv_PRF_6_BAD.so
  737. lib/afni/model_conv_PRF_DOG.so
  738. lib/afni/model_conv_cosine4.so
  739. lib/afni/model_conv_diffgamma.so
  740. lib/afni/model_convgamma.so
  741. lib/afni/model_convgamma2a.so
  742. lib/afni/model_demri_3.so
  743. lib/afni/model_diffexp.so
  744. lib/afni/model_diffusion.so
  745. lib/afni/model_exp.so
  746. lib/afni/model_expMEMRI.so
  747. lib/afni/model_expMEMRI3.so
  748. lib/afni/model_expr2.so
  749. lib/afni/model_gammavar.so
  750. lib/afni/model_linear.so
  751. lib/afni/model_linplusort.so
  752. lib/afni/model_michaelis_menton.so
  753. lib/afni/model_null.so
  754. lib/afni/model_quadratic.so
  755. lib/afni/model_sinewave_ap.so
  756. lib/afni/model_sinewave_apf.so
  757. lib/afni/model_squarewave_ap.so
  758. lib/afni/model_squarewave_apf.so
  759. lib/afni/model_trnglwave_ap.so
  760. lib/afni/model_trnglwave_apf.so
  761. lib/afni/model_zero.so
  762. lib/afni/plug_3Ddump_V2.so
  763. lib/afni/plug_3ddot.so
  764. lib/afni/plug_3ddup.so
  765. lib/afni/plug_3dsvm.so
  766. lib/afni/plug_4Ddump.so
  767. lib/afni/plug_L1fit.so
  768. lib/afni/plug_afnihistory.so
  769. lib/afni/plug_aslA3D3.so
  770. lib/afni/plug_betafit.so
  771. lib/afni/plug_clust.so
  772. lib/afni/plug_compress.so
  773. lib/afni/plug_coorder.so
  774. lib/afni/plug_copy.so
  775. lib/afni/plug_crender.so
  776. lib/afni/plug_deconvolve.so
  777. lib/afni/plug_delay_V2.so
  778. lib/afni/plug_drawdset.so
  779. lib/afni/plug_edit.so
  780. lib/afni/plug_extract.so
  781. lib/afni/plug_fourier.so
  782. lib/afni/plug_hemisub.so
  783. lib/afni/plug_histog.so
  784. lib/afni/plug_histog_multi.so
  785. lib/afni/plug_imreg.so
  786. lib/afni/plug_lsqfit.so
  787. lib/afni/plug_maskave.so
  788. lib/afni/plug_maskcalc.so
  789. lib/afni/plug_maxima.so
  790. lib/afni/plug_nlfit.so
  791. lib/afni/plug_notes.so
  792. lib/afni/plug_nth_dataset.so
  793. lib/afni/plug_nudge.so
  794. lib/afni/plug_permtest.so
  795. lib/afni/plug_power.so
  796. lib/afni/plug_realtime.so
  797. lib/afni/plug_rename.so
  798. lib/afni/plug_reorder.so
  799. lib/afni/plug_retroicor.so
  800. lib/afni/plug_roiedit.so
  801. lib/afni/plug_roiplot.so
  802. lib/afni/plug_scatplot.so
  803. lib/afni/plug_second_dataset.so
  804. lib/afni/plug_stats.so
  805. lib/afni/plug_stavg.so
  806. lib/afni/plug_tag.so
  807. lib/afni/plug_threshold.so
  808. lib/afni/plug_ttget.so
  809. lib/afni/plug_vol2surf.so
  810. lib/afni/plug_volreg.so
  811. lib/afni/plug_wavelets.so
  812. lib/afni/plug_zeropad.so
  813. share/afni/AFNI.afnirc
  814. share/afni/AFNI.sumarc
  815. share/afni/afniInterfaceRT/__init__.py
  816. share/afni/afniInterfaceRT/experiment.py
  817. share/afni/afniInterfaceRT/realtime.py
  818. share/afni/afniInterfaceRT/receiver.py
  819. share/afni/afniInterfaceRT/testOS.py
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  822. share/afni/afnigui_cursor1100.jpg
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  1762. share/afni/meica.libs/nibabel/py3k.py
  1763. share/afni/meica.libs/nibabel/quaternions.py
  1764. share/afni/meica.libs/nibabel/spatialimages.py
  1765. share/afni/meica.libs/nibabel/spm2analyze.py
  1766. share/afni/meica.libs/nibabel/spm99analyze.py
  1767. share/afni/meica.libs/nibabel/testing/__init__.py
  1768. share/afni/meica.libs/nibabel/tests/__init__.py
  1769. share/afni/meica.libs/nibabel/tests/data/0.dcm
  1770. share/afni/meica.libs/nibabel/tests/data/1.dcm
  1771. share/afni/meica.libs/nibabel/tests/data/analyze.hdr
  1772. share/afni/meica.libs/nibabel/tests/data/example4d.nii.gz
  1773. share/afni/meica.libs/nibabel/tests/data/nifti1.hdr
  1774. share/afni/meica.libs/nibabel/tests/data/test.mgz
  1775. share/afni/meica.libs/nibabel/tests/data/tiny.mnc
  1776. share/afni/meica.libs/nibabel/tests/data/tinypet.v
  1777. share/afni/meica.libs/nibabel/tests/test_affines.py
  1778. share/afni/meica.libs/nibabel/tests/test_analyze.py
  1779. share/afni/meica.libs/nibabel/tests/test_arrayproxy.py
  1780. share/afni/meica.libs/nibabel/tests/test_arraywriters.py
  1781. share/afni/meica.libs/nibabel/tests/test_batteryrunners.py
  1782. share/afni/meica.libs/nibabel/tests/test_casting.py
  1783. share/afni/meica.libs/nibabel/tests/test_checkwarns.py
  1784. share/afni/meica.libs/nibabel/tests/test_data.py
  1785. share/afni/meica.libs/nibabel/tests/test_dft.py
  1786. share/afni/meica.libs/nibabel/tests/test_ecat.py
  1787. share/afni/meica.libs/nibabel/tests/test_endiancodes.py
  1788. share/afni/meica.libs/nibabel/tests/test_environment.py
  1789. share/afni/meica.libs/nibabel/tests/test_euler.py
  1790. share/afni/meica.libs/nibabel/tests/test_filehandles.py
  1791. share/afni/meica.libs/nibabel/tests/test_fileholders.py
  1792. share/afni/meica.libs/nibabel/tests/test_filename_parser.py
  1793. share/afni/meica.libs/nibabel/tests/test_files_interface.py
  1794. share/afni/meica.libs/nibabel/tests/test_floating.py
  1795. share/afni/meica.libs/nibabel/tests/test_funcs.py
  1796. share/afni/meica.libs/nibabel/tests/test_image_load_save.py
  1797. share/afni/meica.libs/nibabel/tests/test_minc.py
  1798. share/afni/meica.libs/nibabel/tests/test_nifti1.py
  1799. share/afni/meica.libs/nibabel/tests/test_orientations.py
  1800. share/afni/meica.libs/nibabel/tests/test_quaternions.py
  1801. share/afni/meica.libs/nibabel/tests/test_recoder.py
  1802. share/afni/meica.libs/nibabel/tests/test_round_trip.py
  1803. share/afni/meica.libs/nibabel/tests/test_scaling.py
  1804. share/afni/meica.libs/nibabel/tests/test_spatialimages.py
  1805. share/afni/meica.libs/nibabel/tests/test_spm2analyze.py
  1806. share/afni/meica.libs/nibabel/tests/test_spm99analyze.py
  1807. share/afni/meica.libs/nibabel/tests/test_trackvis.py
  1808. share/afni/meica.libs/nibabel/tests/test_utils.py
  1809. share/afni/meica.libs/nibabel/tests/test_wrapstruct.py
  1810. share/afni/meica.libs/nibabel/tmpdirs.py
  1811. share/afni/meica.libs/nibabel/trackvis.py
  1812. share/afni/meica.libs/nibabel/tripwire.py
  1813. share/afni/meica.libs/nibabel/volumeutils.py
  1814. share/afni/meica.libs/nibabel/wrapstruct.py
  1815. share/afni/meica.libs/select_model.py
  1816. share/afni/meica.libs/t2smap.py
  1817. share/afni/meica.libs/tedana.py
  1818. share/afni/shiny/3dMVM_validator_shiny/afni_funk.R
  1819. share/afni/shiny/3dMVM_validator_shiny/global.R
  1820. share/afni/shiny/3dMVM_validator_shiny/server.R
  1821. share/afni/shiny/3dMVM_validator_shiny/stat_functions.R
  1822. share/afni/shiny/3dMVM_validator_shiny/ui.R
  1823. share/afni/shiny/ClustExp_ShinyTemplate/afni_funk.R
  1824. share/afni/shiny/ClustExp_ShinyTemplate/data/disco_ttest_GroupTable.csv
  1825. share/afni/shiny/ClustExp_ShinyTemplate/data/disco_ttest_StatInfo.csv
  1826. share/afni/shiny/ClustExp_ShinyTemplate/data/disco_ttest_p_uncor_0.005_clusters.csv
  1827. share/afni/shiny/ClustExp_ShinyTemplate/data/disco_ttest_p_uncor_0.005_mean.csv
  1828. share/afni/shiny/ClustExp_ShinyTemplate/data/disco_ttest_p_uncor_0.005_peak.csv
  1829. share/afni/shiny/ClustExp_ShinyTemplate/global.R
  1830. share/afni/shiny/ClustExp_ShinyTemplate/lib_Rafni.R
  1831. share/afni/shiny/ClustExp_ShinyTemplate/server.R
  1832. share/afni/shiny/ClustExp_ShinyTemplate/stat_functions.R
  1833. share/afni/shiny/ClustExp_ShinyTemplate/ui.R
  1834. share/afni/shiny/FATCAT_matplot_shiny/global.R
  1835. share/afni/shiny/FATCAT_matplot_shiny/hclust_methods.csv
  1836. share/afni/shiny/FATCAT_matplot_shiny/server.R
  1837. share/afni/shiny/FATCAT_matplot_shiny/stat_methods.csv
  1838. share/afni/shiny/FATCAT_matplot_shiny/ui.R
  1839. share/afni/shiny/misc/OmicCircos_pkg_install.R
  1840. share/doc/afni/README
  1841. share/doc/afni/README.Ifile
  1842. share/doc/afni/README.afnigui
  1843. share/doc/afni/README.atlas_building
  1844. share/doc/afni/README.attributes
  1845. share/doc/afni/README.bzip2
  1846. share/doc/afni/README.changes
  1847. share/doc/afni/README.compression
  1848. share/doc/afni/README.copyright
  1849. share/doc/afni/README.driver
  1850. share/doc/afni/README.environment
  1851. share/doc/afni/README.func_types
  1852. share/doc/afni/README.notes
  1853. share/doc/afni/README.permtest
  1854. share/doc/afni/README.plugouts
  1855. share/doc/afni/README.realtime
  1856. share/doc/afni/README.registration
  1857. share/doc/afni/README.render_scripts
  1858. share/doc/afni/README.roi
  1859. share/doc/afni/README.setup
  1860. share/doc/afni/README.volreg
  1861. share/doc/afni/README.web
  1862. share/doc/afni/README.ziad
Collapse this list.
Dependency lines:
  • afni>0:science/afni
Conflicts:
CONFLICTS:
  • im-[0-9]*
  • nifticlib-[0-9]*
  • open-usp-tukubai-[0-9]*
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port: cd /usr/ports/science/afni/ && make install clean
To add the package: pkg install afni
PKGNAME: afni
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gm4 : devel/m4
  2. R : math/R
  3. msgfmt : devel/gettext-tools
  4. gmake : devel/gmake
  5. python3.6 : lang/python36
  6. xorgproto>=0 : x11/xorgproto
  7. xorgproto>=0 : x11/xorgproto
  8. x11.pc : x11/libX11
  9. xext.pc : x11/libXext
  10. xi.pc : x11/libXi
  11. xmu.pc : x11-toolkits/libXmu
  12. xt.pc : x11-toolkits/libXt
  13. xpm.pc : x11/libXpm
  14. perl5>=5.30.r1<5.31 : lang/perl5.30
Runtime dependencies:
  1. endian : sysutils/endian
  2. mpeg_encode : multimedia/mpeg_encode
  3. qhull : math/qhull5
  4. R : math/R
  5. cjpeg : graphics/jpeg-turbo
  6. python3.6 : lang/python36
  7. x11.pc : x11/libX11
  8. xext.pc : x11/libXext
  9. xi.pc : x11/libXi
  10. xmu.pc : x11-toolkits/libXmu
  11. xt.pc : x11-toolkits/libXt
  12. xpm.pc : x11/libXpm
  13. perl5>=5.30.r1<5.31 : lang/perl5.30
Library dependencies:
  1. libexpat.so : textproc/expat2
  2. libf2c.so : lang/f2c
  3. libgsl.so : math/gsl
  4. libnetcdff.so : science/netcdf-fortran
  5. libxml2.so : textproc/libxml2
  6. libXm.so : x11-toolkits/open-motif
  7. libnetpbm.so : graphics/netpbm
  8. libintl.so : devel/gettext-runtime
  9. libGL.so : graphics/mesa-libs
  10. libGLU.so : graphics/libGLU
  11. libglib-2.0.so : devel/glib20
  12. libintl.so : devel/gettext-runtime
  13. libiconv.so : converters/libiconv
  14. libXm.so.4 : x11-toolkits/open-motif
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://codeload.github.com/afni/afni/tar.gz/AFNI_19.1.20?dummy=/

Number of commits found: 77

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
28 Sep 2019 10:56:15
Original commit files touched by this commit  19.1.20_3
Revision:513115
zeising search for other commits by this committer
science/afni: Remove dependency on libXp

Remove dependency on libXp from science/afni, it is not needed, and libXp is
being deprecated.
Remove deprecation from science/afni
27 Sep 2019 16:18:59
Original commit files touched by this commit  19.1.20_2
Revision:513046
zeising search for other commits by this committer
Deprecate x11/libXp, it is deprecated upstream

Deprecate x11/libXp, since it is about to be deprecated upstream.  Do *not*
yet set a removal date for x11/libXp, this will be decided later, once most
dependencies are fixed.
Deprecate all ports depending on x11/libXp.
* astro/xephem
* audio/xmcd
* audio/xmmix
* biology/ncbi-toolkit
* deskutils/xmdiary
* ftp/llnlxdir
* ftp/llnlxftp
* graphics/SciPlot
* misc/xtar
* multimedia/mpeg2play
* science/afni
* textproc/mgdiff

Sprinkle USES=xorg as needed.

Discussed with:	bapt
31 Aug 2019 17:11:57
Original commit files touched by this commit  19.1.20_2
Revision:510405
sunpoet search for other commits by this committer
Bump PORTREVISION for science/netcdf-fortran shlib change
14 Aug 2019 12:16:13
Original commit files touched by this commit  19.1.20_1
Revision:508909
mat search for other commits by this committer
Convert to UCL & cleanup pkg-message (categories s)
26 Jul 2019 20:46:57
Original commit files touched by this commit  19.1.20_1
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
18 Jun 2019 19:00:55
Original commit files touched by this commit  19.1.20
Revision:504496
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.20

Upstreamed FreeBSD patches, other minor fixes and enhancements

Reported by:    portscout, Rick Reynolds (NIH)
08 Jun 2019 19:14:18
Original commit files touched by this commit  19.1.18
Revision:503747
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.18

Minor bugfixes/enhancements
01 Jun 2019 12:59:52
Original commit files touched by this commit  19.1.14
Revision:503233
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.14

Minor bug fixes and enhancements, some FreeBSD patches upstreamed
22 May 2019 12:44:17
Original commit files touched by this commit  19.1.10
Revision:502266
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.10

Rapid response from upstream on reported issue.  Additional patches to be
upstreamed in next release.
20 May 2019 19:35:57
Original commit files touched by this commit  19.1.08
Revision:502158
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.08

Switch from personal dist snapshots to Github releases
Improve staging procedure to preserve results of build phase
Temporarily use bundled GLw pending fix of libglw port
12 Dec 2018 01:35:36
Original commit files touched by this commit  2015.11.13_8
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
10 Sep 2018 13:14:52
Original commit files touched by this commit  2015.11.13_7
Revision:479406
mat search for other commits by this committer
Add DOCS options to ports that should have one.

Also various fixes related to said option.

PR:		230864
Submitted by:	mat
exp-runs by:	antoine
23 Jun 2018 08:27:14
Original commit files touched by this commit  2015.11.13_7
Revision:473116
tcberner search for other commits by this committer
Update math/gsl to 2.5

PR:		229067
10 Mar 2018 17:46:06
Original commit files touched by this commit  2015.11.13_6
Revision:464084
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
31 Jan 2018 01:07:08
Original commit files touched by this commit  2015.11.13_5
Revision:460452
jwb search for other commits by this committer
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
19 Dec 2017 14:41:29
Original commit files touched by this commit  2015.11.13_5
Revision:456719
linimon search for other commits by this committer
Mark more recently failing ports broken on aarch64.

While here, pet portlint and reformat some other BROKEN statements.

Approved by:	portmgr (tier-2 blanket)
24 Jul 2017 18:26:39
Original commit files touched by this commit  2015.11.13_5
Revision:446540
pawel search for other commits by this committer
After r446199 libR.so has SONAME and was made visible for
consumer ports. Register correct dependency by using LIB_DEPENDS
instead of BUILD|RUN_DEPENDS dance.

math/rkward-kde4:
- Add 2 missing files to pkg-plist also

PR:		219776
Submitted by:	myself
Approved by:	maintainers timeouts
03 Jul 2017 20:38:12
Original commit files touched by this commit  2015.11.13_5
Revision:444988
tcberner search for other commits by this committer
Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408
23 May 2017 05:03:16
Original commit files touched by this commit  2015.11.13_4
Revision:441503
rezny search for other commits by this committer
Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
04 May 2017 05:26:01
Original commit files touched by this commit  2015.11.13_3
Revision:440090
tcberner search for other commits by this committer
Fix shebangs

Reviewed by:		mat
Approved by:		mat (mentor)
Differential Revision:	https://reviews.freebsd.org/D10527
02 May 2017 05:26:40
Original commit files touched by this commit  2015.11.13_2
Revision:439928
tcberner search for other commits by this committer
Update math/gsl to 2.3

This release introduces some new features and fixes several bugs:
	http://savannah.gnu.org/forum/forum.php?forum_id=8751

* update to 2.3 and take maintainership
* update math/py-gsl to 2.2.0 for gsl2 support
* update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support

PR:		218952
Exp-run by:	antoine
Reviewed by:	mat, rakuco
Approved by:	rakuco (mentor)
Differential Revision:	https://reviews.freebsd.org/D10522
29 Nov 2016 21:15:41
Original commit files touched by this commit  2015.11.13_1
Revision:427397
jrm search for other commits by this committer
science/afni: Use BUILD_DEPENDS/RUN_DEPENDS instead of LIB_DEPENDS for
math/R, because R may be configured without libR.

While here, fix some stage-qa warnings about indirect dependencies.

Reviewed by:	AMDmi3
Approved by:	bacon4000@gmail.com (maintainer) swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8649
19 May 2016 11:09:14
Original commit files touched by this commit  2015.11.13
Revision:415503
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-messages

Approved by:	portmgr blanket
19 May 2016 10:57:35
Original commit files touched by this commit  2015.11.13
Revision:415501
amdmi3 search for other commits by this committer
- Fix trailing whitespace in Makefiles

Approved by:	portmgr blanket
01 Apr 2016 14:25:18
Original commit files touched by this commit  2015.11.13
Revision:412349
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
27 Feb 2016 22:03:30
Original commit files touched by this commit  2015.11.13
Revision:409693
rakuco search for other commits by this committer
Update to 2015.11.13.

Upgrade to a more recent snapshot, and stop requiring GCC.

PR:		206930
Submitted by:	Jason Bacon <bacon4000@gmail.com> (maintainer)
11 Dec 2015 08:48:57
Original commit files touched by this commit  2012.04.17.2129_12
Revision:403506
miwi search for other commits by this committer
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
01 Oct 2015 21:34:36
Original commit files touched by this commit  2012.04.17.2129_12
Revision:398387
amdmi3 search for other commits by this committer
- Pet portlint
- Switch to options helpers

Approved by:	portmgr blanket
22 Jun 2015 18:33:22
Original commit files touched by this commit  2012.04.17.2129_12
Revision:390310
antoine search for other commits by this committer
Convert to USES=jpeg
24 Jan 2015 19:27:28
Original commit files touched by this commit  2012.04.17.2129_12
Revision:377815
antoine search for other commits by this committer
Fix some _DEPENDS
12 Nov 2014 18:48:53
Original commit files touched by this commit  2012.04.17.2129_12
Revision:372500
antoine search for other commits by this committer
Cleanup plist
10 Sep 2014 20:50:37
Original commit files touched by this commit  2012.04.17.2129_11
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
17 Aug 2014 13:09:56
Original commit files touched by this commit  2012.04.17.2129_10
Revision:365182
tijl search for other commits by this committer
math/gsl:
- Add USES=libtool and bump dependent ports
- Add USES=pathfix and INSTALL_TARGET=install-strip

Approved by:	portmgr (implicit, bump unstage port)
15 Aug 2014 21:08:21
Original commit files touched by this commit  2012.04.17.2129_9
Revision:365049
sunpoet search for other commits by this committer
- Update to 4.4.0
- Bump PORTREVISION for science/netcdf-fortran shlib change [1]

Changes:	https://github.com/Unidata/netcdf-fortran/blob/master/RELEASE_NOTES.md
Approved by:	portmgr (implicit, unstaged port) [1]
15 Jul 2014 16:51:35
Original commit files touched by this commit  2012.04.17.2129_8
Revision:361975
adamw search for other commits by this committer
Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.
25 Jun 2014 05:35:32
Original commit files touched by this commit  2012.04.17.2129_8
Revision:359185
bapt search for other commits by this committer
Convert GMAKE to MAKE_CMD
Please note that lots of invocation of MAKE_CMD here are wrong as they do not
properly respect MAKE_ENV and friends

With hat:	portmgr
17 Jun 2014 14:41:05
Original commit files touched by this commit  2012.04.17.2129_8
Revision:358125
rene search for other commits by this committer
science/afni: bring back into shape.

- Stage support
- Unexpire
- Add license (GPLv2)
- Use modern LIB_DEPENDS
- Explicitly mention dependencies
- Add CONFLICTS with im-*, nifticlib-* and open-usp-tukubai-*
- Use perl5 and GCC
- Tidy pkg-descr
- Clean up pkg-plist
- Bump PORTREVISION

While here:
- Use BROKEN_arch to avoid including bsd.port.pre.mk
- Use PORT_OPTIONS:MDOCS instead of NOPORTDOCS
- Remove obsolete post-install target

PR:		186988
Submitted by:	maintainer (jwbacon@tds.net)
13 May 2014 16:59:52
Original commit files touched by this commit  2012.04.17.2129_7
Revision:353973
antoine search for other commits by this committer
Deprecate ports BROKEN for more than 6 months

With hat:	portmgr
10 Mar 2014 20:55:22
Original commit files touched by this commit  2012.04.17.2129_7
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
13 Nov 2013 08:19:35
Original commit files touched by this commit  2012.04.17.2129_6
Revision:333659
bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
26 Oct 2013 00:52:36
Original commit files touched by this commit  2012.04.17.2129_6
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 22:48:31
Original commit files touched by this commit  2012.04.17.2129_5
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
26 Aug 2013 16:06:38
Original commit files touched by this commit  2012.04.17.2129_5
Revision:325401
bf search for other commits by this committer
Update math/gsl to 1.16 and adjust some dependent ports
10 Jul 2013 07:00:44
Original commit files touched by this commit  2012.04.17.2129_4
Revision:322622  Sanity Test Failure
bapt search for other commits by this committer
Convert from USE_MOTIF to USES=motif
While here:
- Trim headers
- Convert USE_GMAKE to USES=gmake
- Remove indefinite article from comment
28 May 2013 15:15:06
Original commit files touched by this commit  2012.04.17.2129_4
Revision:319316
bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
27 Apr 2013 18:25:25
Original commit files touched by this commit  2012.04.17.2129_3
Revision:316683
mva search for other commits by this committer
- Convert USE_ICONV=yes to USES=iconv
- Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig and
  USE_GETTEXT=yes to USES=gettext while here
07 Mar 2013 04:21:35
Original commit files touched by this commit  2012.04.17.2129_3
Revision:313562
bf search for other commits by this committer
update math/R to 2.15.3, and adjust dependent ports
04 Jan 2013 17:51:39
Original commit files touched by this commit  2012.04.17.2129_2
Revision:309935
bf search for other commits by this committer
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
24 Jun 2012 21:53:38
Original commit files touched by this commit  2012.04.17.2129_1

dougb search for other commits by this committer
s/X11BASE/LOCALBASE/, or equivalent.

The X11BASE variable is long gone, however these ports were not updated.
01 Jun 2012 05:26:28
Original commit files touched by this commit  2012.04.17.2129_1

dinoex search for other commits by this committer
- update png to 1.5.10
11 May 2012 17:05:09
Original commit files touched by this commit  2012.04.17.2129

pawel search for other commits by this committer
- Update to build 2012-04-17 [1]
- Projest has new homepage [1]
- Mark MAKE_JOBS_UNSAFE

PR:             ports/167651 [1]
Submitted by:   Jason Bacon <jwbacon@tds.net> (maintainer) [1]
24 Oct 2011 09:11:38
Original commit files touched by this commit  2008.01.02.1043_6

dougb search for other commits by this committer
The vast majority of pkg-descr files had the following format when they
had both lines:

Author: ...
WWW: ....

So standardize on that, and move them to the end of the file when necessary.

Also fix some more whitespace, and remove more "signature tags" of varying
forms, like -- name, etc.

s/AUTHOR/Author/

A few other various formatting issues
03 Jul 2011 13:22:25
Original commit files touched by this commit  2008.01.02.1043_6

ohauer search for other commits by this committer
 - remove MD5
02 May 2011 12:44:53
Original commit files touched by this commit  2008.01.02.1043_6

makc search for other commits by this committer
Bump PORTREVISION after open-mofit update
31 May 2010 02:01:56
Original commit files touched by this commit  2008.01.02.1043_5

ade search for other commits by this committer
Bounce PORTREVISION for gettext-related ports.  Have fun, ya'll.
28 Mar 2010 06:47:48
Original commit files touched by this commit  2008.01.02.1043_4

dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
05 Feb 2010 11:46:55
Original commit files touched by this commit  2008.01.02.1043_3

dinoex search for other commits by this committer
- update to jpeg-8
19 Jun 2009 20:06:31
Original commit files touched by this commit  2008.01.02.1043_2

linimon search for other commits by this committer
Update maintainer's email address.  Had already been done for his
other ports.
24 Jan 2009 10:02:09
Original commit files touched by this commit  2008.01.02.1043_2

flz search for other commits by this committer
Fix science/afni after X.org 7.4 import (needs Xi).

Reported by:    pointyhat (via pav)
25 Jul 2008 12:24:09
Original commit files touched by this commit  2008.01.02.1043_1

pav search for other commits by this committer
- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default
MAKE_ENV
06 Jun 2008 13:59:05
Original commit files touched by this commit  2008.01.02.1043_1

edwin search for other commits by this committer
Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)
19 Apr 2008 17:56:05
Original commit files touched by this commit  2008.01.02.1043
  Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
28 Jan 2008 16:42:02
Original commit files touched by this commit  2008.01.02.1043

tabthorpe search for other commits by this committer
- Update to 2008.01.02.1043

PR:             ports/119961
Submitted by:   Jason Bacon <bacon smithers.neuro.mcw.edu> (maintainer)
21 Jun 2007 12:33:48
Original commit files touched by this commit  2007.06.15.1339

miwi search for other commits by this committer
- Update to 2007.06.15.1339
- Unbreak

PR:             113887
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
10 Jun 2007 04:04:38
Original commit files touched by this commit  2007.04.18.1830_1

kris search for other commits by this committer
BROKEN: Does not compile
19 May 2007 20:32:57
Original commit files touched by this commit  2007.04.18.1830_1

flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
21 Apr 2007 13:37:39
Original commit files touched by this commit  2007.04.18.1830

miwi search for other commits by this committer
- Update to 2007.04.18.1830
- Respect X11BASE

PR:             111890
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
01 Dec 2006 14:07:50
Original commit files touched by this commit  2006.06.30.1332

laszlof search for other commits by this committer
Respect X11BASE

PR:     ports/106101
Submitted by:   self
Approved by:    Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
Reported by:    pointyhat
24 Sep 2006 18:24:09
Original commit files touched by this commit  2006.06.30.1332

pav search for other commits by this committer
- Fix plugins
- Update to 2006.06.30.1332

PR:             ports/103318
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
06 Jul 2006 21:57:06
Original commit files touched by this commit  2006.03.21.1314

linimon search for other commits by this committer
Remove backquote from BROKEN string to avoid upsetting portsmon code.

Hat:            portmgr
25 May 2006 14:23:50
Original commit files touched by this commit  2006.03.21.1314

arved search for other commits by this committer
Update to 2006.03.21.1314

PR:             97404
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu>
15 Apr 2006 18:24:01
Original commit files touched by this commit  2005.12.30.0934.2

arved search for other commits by this committer
Update to 2005.12.30.0934.2

PR:             94302
Submitted by:   maintainer
13 Feb 2006 10:24:18
Original commit files touched by this commit  2005.12.30.0934

vd search for other commits by this committer
Change `NOT_FOR_ARCHS' with `if ARCH then BROKEN'

Noticed by:     danfe
Approved by:    garga (mentor)
09 Feb 2006 15:58:54
Original commit files touched by this commit  2005.12.30.0934

vd search for other commits by this committer
Mark NOT_FOR_ARCHS=sparc64, maintainer did not fix the build for 7 days
after kris' mail

Approved by:    garga (mentor)
30 Jan 2006 10:03:13
Original commit files touched by this commit  2005.12.30.0934

vd search for other commits by this committer
Changes to the port:
Author fixed the problem with filename versioning by placing filenames
without version in their name in a subdirectory on the web server.

Changes to the software itself:
-DPIC -fPIC used only for amd64 and ia64, suggested by kris

Approved by:    garga (mentor)
26 Jan 2006 09:35:45
Original commit files touched by this commit  2005.12.30.0934

vd search for other commits by this committer
Update Makefile.FreeBSD_PORT's checksum.

-DPIC -fPIC were added to CFLAGS in Makefile.FreeBSD_PORT to make it
compile on amd64.

Approved by:    garga (mentor)
25 Jan 2006 17:34:35
Original commit files touched by this commit  2005.12.30.0934

vd search for other commits by this committer
Add new port science/afni

AFNI (Advanced Functional Neuro Imaging) is a tool for analyzing
3 dimensional images, especially functional MRI images used in
brain mapping research.

WWW: http://afni.nimh.nih.gov/

PR:             ports/90752
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu>
Reviewed by:    garga (mentor)
Approved by:    garga (mentor)

Number of commits found: 77

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