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Port details
afni Advanced Functional Neuro Imaging
21.3.00 science on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 21.2.06Version of this port present on the latest quarterly branch.
Maintainer: fernape@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-01-25 17:37:44
Last Update: 2021-10-22 11:42:20
Commit Hash: cb177d8
People watching this port, also watch:: exifprobe, l0phtcrack, qgis
Also Listed In: biology graphics perl5 python
License: GPLv2
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
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  1. /usr/local/share/licenses/afni-21.3.00/catalog.mk
  2. /usr/local/share/licenses/afni-21.3.00/LICENSE
  3. /usr/local/share/licenses/afni-21.3.00/GPLv2
  4. bin/1dApar2mat
  5. bin/1dAstrip
  6. bin/1dBandpass
  7. bin/1dBport
  8. bin/1dCorrelate
  9. bin/1dDW_Grad_o_Mat++
  10. bin/1dFlagMotion
  11. bin/1dGC.R
  12. bin/1dMarry
  13. bin/1dNLfit
  14. bin/1dRplot
  15. bin/1dRplot.R
  16. bin/1dSEM
  17. bin/1dSEMr.R
  18. bin/1dSVAR.R
  19. bin/1dTsort
  20. bin/1dUpsample
  21. bin/1d_tool.py
  22. bin/1dcat
  23. bin/1ddot
  24. bin/1deval
  25. bin/1dfft
  26. bin/1dgenARMA11
  27. bin/1dgrayplot
  28. bin/1dmatcalc
  29. bin/1dnorm
  30. bin/1dplot
  31. bin/1dplot.py
  32. bin/1dsound
  33. bin/1dsum
  34. bin/1dsvd
  35. bin/1dtranspose
  36. bin/24swap
  37. bin/2dImReg
  38. bin/2dcat
  39. bin/2perm
  40. bin/2swap
  41. bin/3dABoverlap
  42. bin/3dAFNIto3D
  43. bin/3dAFNItoANALYZE
  44. bin/3dAFNItoNIFTI
  45. bin/3dAFNItoNIML
  46. bin/3dAFNItoRaw
  47. bin/3dANOVA
  48. bin/3dANOVA2
  49. bin/3dANOVA3
  50. bin/3dAcost
  51. bin/3dAllineate
  52. bin/3dAmpToRSFC
  53. bin/3dAnhist
  54. bin/3dAttribute
  55. bin/3dAutoTcorrelate
  56. bin/3dAutobox
  57. bin/3dAutomask
  58. bin/3dBRAIN_VOYAGERtoAFNI
  59. bin/3dBallMatch
  60. bin/3dBandpass
  61. bin/3dBlurInMask
  62. bin/3dBlurToFWHM
  63. bin/3dBrainSync
  64. bin/3dBrickStat
  65. bin/3dCM
  66. bin/3dCRUISEtoAFNI
  67. bin/3dClipLevel
  68. bin/3dClustCount
  69. bin/3dClustSim
  70. bin/3dClusterize
  71. bin/3dCompareAffine
  72. bin/3dConformist
  73. bin/3dConvolve
  74. bin/3dDFT
  75. bin/3dDTeig
  76. bin/3dDTtoDWI
  77. bin/3dDTtoNoisyDWI
  78. bin/3dDWItoDT
  79. bin/3dDWUncert
  80. bin/3dDeconvolve
  81. bin/3dDegreeCentrality
  82. bin/3dDespike
  83. bin/3dDetrend
  84. bin/3dECM
  85. bin/3dEigsToDT
  86. bin/3dEmpty
  87. bin/3dEntropy
  88. bin/3dErrtsCormat
  89. bin/3dExchange
  90. bin/3dExtractGroupInCorr
  91. bin/3dExtrema
  92. bin/3dFDR
  93. bin/3dFFT
  94. bin/3dFWHMx
  95. bin/3dFriedman
  96. bin/3dGC.R
  97. bin/3dGenFeatureDist
  98. bin/3dGenPriors
  99. bin/3dGetrow
  100. bin/3dGrayplot
  101. bin/3dGroupInCorr
  102. bin/3dHist
  103. bin/3dICA.R
  104. bin/3dICC
  105. bin/3dICC.R
  106. bin/3dISC
  107. bin/3dISC.R
  108. bin/3dIntracranial
  109. bin/3dInvFMRI
  110. bin/3dKS.R
  111. bin/3dKruskalWallis
  112. bin/3dLFCD
  113. bin/3dLME
  114. bin/3dLME.R
  115. bin/3dLMEr
  116. bin/3dLMEr.R
  117. bin/3dLRflip
  118. bin/3dLSS
  119. bin/3dLocalACF
  120. bin/3dLocalBistat
  121. bin/3dLocalHistog
  122. bin/3dLocalPV
  123. bin/3dLocalSVD
  124. bin/3dLocalstat
  125. bin/3dLombScargle
  126. bin/3dMEMA
  127. bin/3dMEMA.R
  128. bin/3dMEPFM
  129. bin/3dMEPFM.R
  130. bin/3dMSE
  131. bin/3dMSS
  132. bin/3dMSS.R
  133. bin/3dMVM
  134. bin/3dMVM.R
  135. bin/3dMVM_validator
  136. bin/3dMannWhitney
  137. bin/3dMaskToASCII
  138. bin/3dMatch
  139. bin/3dMean
  140. bin/3dMedianFilter
  141. bin/3dMultiThresh
  142. bin/3dNLfim
  143. bin/3dNetCorr
  144. bin/3dNormalityTest
  145. bin/3dNotes
  146. bin/3dNwarpAdjust
  147. bin/3dNwarpApply
  148. bin/3dNwarpCalc
  149. bin/3dNwarpCat
  150. bin/3dNwarpFuncs
  151. bin/3dNwarpXYZ
  152. bin/3dOverlap
  153. bin/3dPAR2AFNI.pl
  154. bin/3dPFM
  155. bin/3dPFM.R
  156. bin/3dPVmap
  157. bin/3dPeriodogram
  158. bin/3dPolyfit
  159. bin/3dPval
  160. bin/3dQwarp
  161. bin/3dREMLfit
  162. bin/3dROIMaker
  163. bin/3dROIstats
  164. bin/3dRSFC
  165. bin/3dRank
  166. bin/3dRankizer
  167. bin/3dReHo
  168. bin/3dRegAna
  169. bin/3dRetinoPhase
  170. bin/3dRowFillin
  171. bin/3dRprogDemo
  172. bin/3dRprogDemo.R
  173. bin/3dSeg
  174. bin/3dSetupGroupInCorr
  175. bin/3dSharpen
  176. bin/3dSignatures
  177. bin/3dSignatures.R
  178. bin/3dSkullStrip
  179. bin/3dSliceNDice
  180. bin/3dSpaceTimeCorr
  181. bin/3dSpatNorm
  182. bin/3dStatClust
  183. bin/3dSurf2Vol
  184. bin/3dSurfMask
  185. bin/3dSynthesize
  186. bin/3dTORTOISEtoHere
  187. bin/3dTRfix
  188. bin/3dTSgen
  189. bin/3dTagalign
  190. bin/3dTcat
  191. bin/3dTcorr1D
  192. bin/3dTcorrMap
  193. bin/3dTcorrelate
  194. bin/3dTfilter
  195. bin/3dTfitter
  196. bin/3dThreetoRGB
  197. bin/3dTnorm
  198. bin/3dToutcount
  199. bin/3dToyProg
  200. bin/3dTproject
  201. bin/3dTqual
  202. bin/3dTrackID
  203. bin/3dTshift
  204. bin/3dTsmooth
  205. bin/3dTsort
  206. bin/3dTsplit4D
  207. bin/3dTstat
  208. bin/3dTto1D
  209. bin/3dTwotoComplex
  210. bin/3dUndump
  211. bin/3dUnifize
  212. bin/3dUpsample
  213. bin/3dVecRGB_to_HSL
  214. bin/3dVol2Surf
  215. bin/3dWarp
  216. bin/3dWarpDrive
  217. bin/3dWilcoxon
  218. bin/3dWinsor
  219. bin/3dXClustSim
  220. bin/3dXYZcat
  221. bin/3dZcat
  222. bin/3dZcutup
  223. bin/3dZeropad
  224. bin/3dZipperZapper
  225. bin/3dZregrid
  226. bin/3danisosmooth
  227. bin/3daxialize
  228. bin/3dbucket
  229. bin/3dcalc
  230. bin/3dclust
  231. bin/3dcopy
  232. bin/3ddelay
  233. bin/3ddot
  234. bin/3ddot_beta
  235. bin/3dedge3
  236. bin/3dfim+
  237. bin/3dfractionize
  238. bin/3dhistog
  239. bin/3dinfill
  240. bin/3dinfo
  241. bin/3dkmeans
  242. bin/3dmaskSVD
  243. bin/3dmask_tool
  244. bin/3dmaskave
  245. bin/3dmaskdump
  246. bin/3dmatcalc
  247. bin/3dmatmult
  248. bin/3dmaxdisp
  249. bin/3dmaxima
  250. bin/3dmerge
  251. bin/3dnewid
  252. bin/3dnvals
  253. bin/3dpc
  254. bin/3drefit
  255. bin/3drename
  256. bin/3dresample
  257. bin/3dretroicor
  258. bin/3drotate
  259. bin/3dsvm
  260. bin/3dsvm_linpredict
  261. bin/3dtoXdataset
  262. bin/3dttest++
  263. bin/3dvolreg
  264. bin/4swap
  265. bin/@1dDiffMag
  266. bin/@2dwarper
  267. bin/@2dwarper.Allin
  268. bin/@4Daverage
  269. bin/@ANATICOR
  270. bin/@AddEdge
  271. bin/@AfniEnv
  272. bin/@AfniOrient2RAImap
  273. bin/@AfniOrientSign
  274. bin/@Align_Centers
  275. bin/@Atlasize
  276. bin/@Center_Distance
  277. bin/@CheckForAfniDset
  278. bin/@ClustExp_CatLab
  279. bin/@ClustExp_run_shiny
  280. bin/@CommandGlobb
  281. bin/@DO.examples
  282. bin/@DeblankFileNames
  283. bin/@DiceMetric
  284. bin/@DriveAfni
  285. bin/@DriveSuma
  286. bin/@ElectroGrid
  287. bin/@ExamineGenFeatDists
  288. bin/@FS_roi_label
  289. bin/@FSlabel2dset
  290. bin/@FindAfniDsetPath
  291. bin/@FromRAI
  292. bin/@FullPath
  293. bin/@GetAfniBin
  294. bin/@GetAfniDims
  295. bin/@GetAfniID
  296. bin/@GetAfniOrient
  297. bin/@GetAfniPrefix
  298. bin/@GetAfniRes
  299. bin/@GetAfniView
  300. bin/@GradFlipTest
  301. bin/@Install_3dPFM_Demo
  302. bin/@Install_AP_MULTI_DEMO1
  303. bin/@Install_AfniRetinoDemo
  304. bin/@Install_ClustScat_Demo
  305. bin/@Install_D99_macaque
  306. bin/@Install_DBSproc
  307. bin/@Install_FATCAT_DEMO
  308. bin/@Install_FATCAT_DEMO2
  309. bin/@Install_FATMVM_DEMO
  310. bin/@Install_IBT_DATASETS
  311. bin/@Install_InstaCorr_Demo
  312. bin/@Install_MACAQUE_DEMO
  313. bin/@Install_MACAQUE_DEMO_REST
  314. bin/@Install_MEICA_Demo
  315. bin/@Install_NIH_Marmoset
  316. bin/@Install_NMT
  317. bin/@Install_RSFMRI_Motion_Group_Demo
  318. bin/@Install_SURFLAYERS_DEMO1
  319. bin/@Install_TSrestMovieDemo
  320. bin/@IsoMasks
  321. bin/@MakeLabelTable
  322. bin/@NoExt
  323. bin/@NoPound
  324. bin/@NoisySkullStrip
  325. bin/@Purify_1D
  326. bin/@Quiet_Talkers
  327. bin/@ROI_Corr_Mat
  328. bin/@ROI_decluster
  329. bin/@ROI_modal_grow
  330. bin/@R_funclist
  331. bin/@RenamePanga
  332. bin/@Reorder
  333. bin/@RetinoProc
  334. bin/@SSwarper
  335. bin/@SUMA_AlignToExperiment
  336. bin/@SUMA_FSvolToBRIK
  337. bin/@SUMA_Make_Spec_Caret
  338. bin/@SUMA_Make_Spec_FS
  339. bin/@SUMA_Make_Spec_SF
  340. bin/@SUMA_renumber_FS
  341. bin/@ScaleVolume
  342. bin/@ScriptCheck
  343. bin/@Shift_Volume
  344. bin/@ShowDynamicRange
  345. bin/@SkullStrip_TouchUp
  346. bin/@Spharm.examples
  347. bin/@SurfSmooth.HEAT_07.examples
  348. bin/@T1scale
  349. bin/@TimeDiff
  350. bin/@ToRAI
  351. bin/@VolCenter
  352. bin/@afni.run.me
  353. bin/@afni_R_package_install
  354. bin/@afni_refacer_make_master
  355. bin/@afni_refacer_make_master_addendum
  356. bin/@afni_refacer_make_onebigA12
  357. bin/@afni_refacer_run
  358. bin/@align_partial_oblique
  359. bin/@animal_warper
  360. bin/@auto_tlrc
  361. bin/@build_afni_Xlib
  362. bin/@chauffeur_afni
  363. bin/@clean_help_dir
  364. bin/@clip_volume
  365. bin/@compute_OC_weights
  366. bin/@compute_gcor
  367. bin/@demo_prompt
  368. bin/@diff.files
  369. bin/@diff.tree
  370. bin/@djunct_4d_imager
  371. bin/@djunct_4d_slices_to_3d_vol
  372. bin/@djunct_anonymize
  373. bin/@djunct_dwi_selector.tcsh
  374. bin/@djunct_edgy_align_check
  375. bin/@djunct_glue_imgs_vert
  376. bin/@djunct_json_value.py
  377. bin/@djunct_modal_smoothing_with_rep
  378. bin/@djunct_montage_coordinator
  379. bin/@djunct_overlap_check
  380. bin/@djunct_slice_space
  381. bin/@djunct_ssw_intermed_edge_imgs
  382. bin/@djunct_vol_3slice_select
  383. bin/@escape-
  384. bin/@extract_meica_ortvec
  385. bin/@fast_roi
  386. bin/@fat_tract_colorize
  387. bin/@fix_FSsphere
  388. bin/@float_fix
  389. bin/@get.afni.version
  390. bin/@global_parse
  391. bin/@grayplot
  392. bin/@help.AFNI
  393. bin/@isOblique
  394. bin/@make_plug_diff
  395. bin/@measure_bb_thick
  396. bin/@measure_erosion_thick
  397. bin/@measure_in2out
  398. bin/@move.to.series.dirs
  399. bin/@np
  400. bin/@parse_afni_name
  401. bin/@parse_name
  402. bin/@radial_correlate
  403. bin/@simulate_motion
  404. bin/@snapshot_volreg
  405. bin/@statauxcode
  406. bin/@suma_acknowledge
  407. bin/@suma_reprefixize_spec
  408. bin/@surf_to_vol_spackle
  409. bin/@thickness_master
  410. bin/@toMNI_Awarp
  411. bin/@toMNI_Qwarpar
  412. bin/@update.afni.binaries
  413. bin/@xyz_to_ijk
  414. bin/AFNI_Batch_R
  415. bin/AFNI_atlas_spaces.niml
  416. bin/AFNI_version.txt
  417. bin/AFNIio.R
  418. bin/AFNIplot.R
  419. bin/AnalyzeTrace
  420. bin/BayesianGroupAna.R
  421. bin/BayesianGroupAna.py
  422. bin/BrainSkin
  423. bin/CMakeLists.txt
  424. bin/ClustExp_HistTable.py
  425. bin/ClustExp_StatParse.py
  426. bin/CompareSurfaces
  427. bin/ConvertDset
  428. bin/ConvertSurface
  429. bin/ConvexHull
  430. bin/CreateIcosahedron
  431. bin/DTIStudioFibertoSegments
  432. bin/Dimon
  433. bin/DriveSuma
  434. bin/ExamineXmat
  435. bin/ExamineXmat.R
  436. bin/FATCAT_matplot
  437. bin/FIRdesign
  438. bin/FSread_annot
  439. bin/GLTsymtest
  440. bin/HalloSuma
  441. bin/InstaTract
  442. bin/IsoSurface
  443. bin/Level2.R
  444. bin/MBA
  445. bin/MBA.R
  446. bin/MakeColorMap
  447. bin/MapIcosahedron
  448. bin/PTA
  449. bin/PTA.R
  450. bin/ParseName
  451. bin/RBA
  452. bin/RBA.R
  453. bin/ROI2dataset
  454. bin/ROIgrow
  455. bin/RSFgen
  456. bin/RetroTS.py
  457. bin/SUMA_glxdino
  458. bin/SUMA_paperplane
  459. bin/SUMA_pixmap2eps
  460. bin/SampBias
  461. bin/ScaleToMap
  462. bin/Signatures.R
  463. bin/SpharmDeco
  464. bin/SpharmReco
  465. bin/Surf2VolCoord
  466. bin/SurfClust
  467. bin/SurfDist
  468. bin/SurfDsetInfo
  469. bin/SurfExtrema
  470. bin/SurfFWHM
  471. bin/SurfInfo
  472. bin/SurfLayers
  473. bin/SurfLocalstat
  474. bin/SurfMeasures
  475. bin/SurfPatch
  476. bin/SurfQual
  477. bin/SurfRetinoMap
  478. bin/SurfSmooth
  479. bin/SurfToSurf
  480. bin/SurfaceMetrics
  481. bin/TRR
  482. bin/TRR.R
  483. bin/Vecwarp
  484. bin/Xphace
  485. bin/abids_json_info.py
  486. bin/abids_json_tool.py
  487. bin/abids_tool.py
  488. bin/adjunct_apqc_tsnr_general
  489. bin/adjunct_aw_tableize_roi_info.py
  490. bin/adjunct_calc_mont_dims.py
  491. bin/adjunct_combine_str.py
  492. bin/adjunct_is_label.py
  493. bin/adjunct_make_script_and_rst.py
  494. bin/adjunct_select_str.py
  495. bin/adjunct_simplify_cost.py
  496. bin/adjunct_suma_fs_mask_and_qc
  497. bin/adjunct_suma_fs_roi_info
  498. bin/adjunct_tort_plot_dp_align
  499. bin/adjunct_tort_read_dp_align.py
  500. bin/adwarp
  501. bin/afni
  502. bin/afni_check_omp
  503. bin/afni_fs_aparc+aseg_2000.txt
  504. bin/afni_fs_aparc+aseg_2009.txt
  505. bin/afni_history
  506. bin/afni_open
  507. bin/afni_proc.py
  508. bin/afni_python_wrapper.py
  509. bin/afni_run_R
  510. bin/afni_seeds_per_space.txt
  511. bin/afni_skeleton.py
  512. bin/afni_system_check.py
  513. bin/afni_vcheck
  514. bin/aiv
  515. bin/align_epi_anat.py
  516. bin/ap_run_simple_rest.tcsh
  517. bin/apqc_make_html.py
  518. bin/apqc_make_tcsh.py
  519. bin/apsearch
  520. bin/auto_warp.py
  521. bin/byteorder
  522. bin/cat_matvec
  523. bin/ccalc
  524. bin/cifti_tool
  525. bin/column_cat
  526. bin/convert_cdiflist_to_grads.py
  527. bin/count
  528. bin/dcm2niix_afni
  529. bin/demo.fixed.niml.do
  530. bin/demo.mobile.niml.do
  531. bin/dicom_hdr
  532. bin/dicom_hinfo
  533. bin/dicom_to_raw
  534. bin/dsetstat2p
  535. bin/eg_main_chrono.py
  536. bin/epi_b0_correct.py
  537. bin/fat_mat2d_plot.py
  538. bin/fat_mat_sel.py
  539. bin/fat_mat_tableize.py
  540. bin/fat_mvm_gridconv.py
  541. bin/fat_mvm_prep.py
  542. bin/fat_mvm_scripter.py
  543. bin/fat_proc_align_anat_pair
  544. bin/fat_proc_axialize_anat
  545. bin/fat_proc_connec_vis
  546. bin/fat_proc_convert_dcm_anat
  547. bin/fat_proc_convert_dcm_dwis
  548. bin/fat_proc_decmap
  549. bin/fat_proc_dwi_to_dt
  550. bin/fat_proc_filter_dwis
  551. bin/fat_proc_imit2w_from_t1w
  552. bin/fat_proc_map_to_dti
  553. bin/fat_proc_select_vols
  554. bin/fat_roi_row.py
  555. bin/fdrval
  556. bin/fftest
  557. bin/file_tool
  558. bin/fim2
  559. bin/float_scan
  560. bin/from3d
  561. bin/gen_epi_review.py
  562. bin/gen_group_command.py
  563. bin/gen_ss_review_scripts.py
  564. bin/gen_ss_review_table.py
  565. bin/get_afni_model_PRF
  566. bin/get_afni_model_PRF_6
  567. bin/get_afni_model_PRF_6_BAD
  568. bin/gifti_tool
  569. bin/help_format
  570. bin/im2niml
  571. bin/images_equal
  572. bin/imand
  573. bin/imaver
  574. bin/imcalc
  575. bin/imcat
  576. bin/imcutup
  577. bin/imdump
  578. bin/immask
  579. bin/imreg
  580. bin/imrotate
  581. bin/imstack
  582. bin/imstat
  583. bin/imupsam
  584. bin/inspec
  585. bin/lesion_align
  586. bin/make_pq_script.py
  587. bin/make_random_timing.py
  588. bin/make_stim_times.py
  589. bin/map_TrackID
  590. bin/meica.py
  591. bin/mycat
  592. bin/myget
  593. bin/neuro_deconvolve.py
  594. bin/nicat
  595. bin/niccc
  596. bin/nifti1_tool
  597. bin/nifti_tool
  598. bin/niml_feedme
  599. bin/niprobe
  600. bin/nsize
  601. bin/p2dsetstat
  602. bin/parse_fs_lt_log.py
  603. bin/plugout_drive
  604. bin/plugout_ijk
  605. bin/plugout_tt
  606. bin/plugout_tta
  607. bin/prompt_popup
  608. bin/prompt_user
  609. bin/python_module_test.py
  610. bin/quick.alpha.vals.py
  611. bin/quickspec
  612. bin/quickspecSL
  613. bin/quotize
  614. bin/rPkgsInstall
  615. bin/rPkgsInstall.R
  616. bin/read_matlab_files.py
  617. bin/realtime_receiver.py
  618. bin/rmz
  619. bin/rotcom
  620. bin/rtfeedme
  621. bin/serial_helper
  622. bin/sfim
  623. bin/slow_surf_clustsim.py
  624. bin/smooth.R
  625. bin/stimband
  626. bin/strblast
  627. bin/suma
  628. bin/suma_change_spec
  629. bin/tedana_wrapper.py
  630. bin/tfim
  631. bin/timing_tool.py
  632. bin/to3d
  633. bin/tokens
  634. bin/uber_align_test.py
  635. bin/uber_proc.py
  636. bin/uber_skel.py
  637. bin/uber_subject.py
  638. bin/uber_ttest.py
  639. bin/unWarpEPI.py
  640. bin/uniq_images
  641. bin/waver
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  658. include/afni/debugtrace.h
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  689. include/afni/vecmat.h
  690. include/afni/vol2surf.h
  691. include/afni/znzlib.h
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  1636. share/afni/funstuff/splash_yrkim.jpg
  1637. share/afni/funstuff/splash_zsaad1.jpg
  1638. share/afni/lib_RetroTS/PeakFinder.py
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  1640. share/afni/lib_RetroTS/RVT_from_PeakFinder.py
  1641. share/afni/lib_RetroTS/Show_RVT_Peak.py
  1642. share/afni/lib_RetroTS/__init__.py
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  1644. share/afni/meica.libs/alignp_mepi_anat.py
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  1649. share/afni/meica.libs/mdp/configuration.py
  1650. share/afni/meica.libs/mdp/extension.py
  1651. share/afni/meica.libs/mdp/graph/__init__.py
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  1654. share/afni/meica.libs/mdp/hinet/__init__.py
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  1658. share/afni/meica.libs/mdp/hinet/layer.py
  1659. share/afni/meica.libs/mdp/hinet/switchboard.py
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  1665. share/afni/meica.libs/mdp/nodes/em_nodes.py
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  1669. share/afni/meica.libs/mdp/nodes/ica_nodes.py~
  1670. share/afni/meica.libs/mdp/nodes/ica_nodes_old.py
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  1672. share/afni/meica.libs/mdp/nodes/jade.py
  1673. share/afni/meica.libs/mdp/nodes/libsvm_classifier.py
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  1675. share/afni/meica.libs/mdp/nodes/misc_nodes.py
  1676. share/afni/meica.libs/mdp/nodes/neural_gas_nodes.py
  1677. share/afni/meica.libs/mdp/nodes/nipals.py
  1678. share/afni/meica.libs/mdp/nodes/pca_nodes.py
  1679. share/afni/meica.libs/mdp/nodes/rbm_nodes.py
  1680. share/afni/meica.libs/mdp/nodes/regression_nodes.py
  1681. share/afni/meica.libs/mdp/nodes/scikits_nodes.py
  1682. share/afni/meica.libs/mdp/nodes/sfa_nodes.py
  1683. share/afni/meica.libs/mdp/nodes/shogun_svm_classifier.py
  1684. share/afni/meica.libs/mdp/nodes/svm_classifiers.py
  1685. share/afni/meica.libs/mdp/nodes/xsfa_nodes.py
  1686. share/afni/meica.libs/mdp/parallel/__init__.py
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  1688. share/afni/meica.libs/mdp/parallel/parallelflows.py
  1689. share/afni/meica.libs/mdp/parallel/parallelhinet.py
  1690. share/afni/meica.libs/mdp/parallel/parallelnodes.py
  1691. share/afni/meica.libs/mdp/parallel/pp_slave_script.py
  1692. share/afni/meica.libs/mdp/parallel/pp_slave_wrapper.py
  1693. share/afni/meica.libs/mdp/parallel/pp_support.py
  1694. share/afni/meica.libs/mdp/parallel/process_schedule.py
  1695. share/afni/meica.libs/mdp/parallel/scheduling.py
  1696. share/afni/meica.libs/mdp/parallel/thread_schedule.py
  1697. share/afni/meica.libs/mdp/repo_revision.py
  1698. share/afni/meica.libs/mdp/signal_node.py
  1699. share/afni/meica.libs/mdp/test/__init__.py
  1700. share/afni/meica.libs/mdp/test/_tools.py
  1701. share/afni/meica.libs/mdp/test/benchmark_mdp.py
  1702. share/afni/meica.libs/mdp/test/conftest.py
  1703. share/afni/meica.libs/mdp/test/ide_run.py
  1704. share/afni/meica.libs/mdp/test/run_tests.py
  1705. share/afni/meica.libs/mdp/test/test_AdaptiveCutoffNode.py
  1706. share/afni/meica.libs/mdp/test/test_Convolution2DNode.py
  1707. share/afni/meica.libs/mdp/test/test_CutoffNode.py
  1708. share/afni/meica.libs/mdp/test/test_EtaComputerNode.py
  1709. share/afni/meica.libs/mdp/test/test_FANode.py
  1710. share/afni/meica.libs/mdp/test/test_FDANode.py
  1711. share/afni/meica.libs/mdp/test/test_GaussianClassifier.py
  1712. share/afni/meica.libs/mdp/test/test_GeneralExpansionNode.py
  1713. share/afni/meica.libs/mdp/test/test_GrowingNeuralGasNode.py
  1714. share/afni/meica.libs/mdp/test/test_HistogramNode.py
  1715. share/afni/meica.libs/mdp/test/test_HitParadeNode.py
  1716. share/afni/meica.libs/mdp/test/test_ICANode.py
  1717. share/afni/meica.libs/mdp/test/test_ISFANode.py
  1718. share/afni/meica.libs/mdp/test/test_KNNClassifier.py
  1719. share/afni/meica.libs/mdp/test/test_LinearRegressionNode.py
  1720. share/afni/meica.libs/mdp/test/test_NearestMeanClassifier.py
  1721. share/afni/meica.libs/mdp/test/test_NeuralGasNode.py
  1722. share/afni/meica.libs/mdp/test/test_NoiseNode.py
  1723. share/afni/meica.libs/mdp/test/test_PCANode.py
  1724. share/afni/meica.libs/mdp/test/test_PolynomialExpansionNode.py
  1725. share/afni/meica.libs/mdp/test/test_PreseverDimNode.py
  1726. share/afni/meica.libs/mdp/test/test_RBFExpansionNode.py
  1727. share/afni/meica.libs/mdp/test/test_RBM.py
  1728. share/afni/meica.libs/mdp/test/test_SFA2Node.py
  1729. share/afni/meica.libs/mdp/test/test_SFANode.py
  1730. share/afni/meica.libs/mdp/test/test_TimeDelayNodes.py
  1731. share/afni/meica.libs/mdp/test/test_TimeFrameNode.py
  1732. share/afni/meica.libs/mdp/test/test_VariadicCumulator.py
  1733. share/afni/meica.libs/mdp/test/test_WhiteningNode.py
  1734. share/afni/meica.libs/mdp/test/test_caching.py
  1735. share/afni/meica.libs/mdp/test/test_classifier.py
  1736. share/afni/meica.libs/mdp/test/test_config.py
  1737. share/afni/meica.libs/mdp/test/test_contrib.py
  1738. share/afni/meica.libs/mdp/test/test_copying.py
  1739. share/afni/meica.libs/mdp/test/test_extension.py
  1740. share/afni/meica.libs/mdp/test/test_fastica.py
  1741. share/afni/meica.libs/mdp/test/test_flows.py
  1742. share/afni/meica.libs/mdp/test/test_graph.py
  1743. share/afni/meica.libs/mdp/test/test_hinet.py
  1744. share/afni/meica.libs/mdp/test/test_hinet_generic.py
  1745. share/afni/meica.libs/mdp/test/test_metaclass_and_extensions.py
  1746. share/afni/meica.libs/mdp/test/test_namespace_fixups.py
  1747. share/afni/meica.libs/mdp/test/test_node_covariance.py
  1748. share/afni/meica.libs/mdp/test/test_node_metaclass.py
  1749. share/afni/meica.libs/mdp/test/test_node_operations.py
  1750. share/afni/meica.libs/mdp/test/test_nodes_generic.py
  1751. share/afni/meica.libs/mdp/test/test_parallelclassifiers.py
  1752. share/afni/meica.libs/mdp/test/test_parallelflows.py
  1753. share/afni/meica.libs/mdp/test/test_parallelhinet.py
  1754. share/afni/meica.libs/mdp/test/test_parallelnodes.py
  1755. share/afni/meica.libs/mdp/test/test_pp_local.py
  1756. share/afni/meica.libs/mdp/test/test_pp_remote.py
  1757. share/afni/meica.libs/mdp/test/test_process_schedule.py
  1758. share/afni/meica.libs/mdp/test/test_reload.py
  1759. share/afni/meica.libs/mdp/test/test_schedule.py
  1760. share/afni/meica.libs/mdp/test/test_scikits.py
  1761. share/afni/meica.libs/mdp/test/test_seed.py
  1762. share/afni/meica.libs/mdp/test/test_svm_classifier.py
  1763. share/afni/meica.libs/mdp/test/test_tempdir.py
  1764. share/afni/meica.libs/mdp/test/test_utils.py
  1765. share/afni/meica.libs/mdp/test/test_utils_generic.py
  1766. share/afni/meica.libs/mdp/utils/__init__.py
  1767. share/afni/meica.libs/mdp/utils/_ordered_dict.py
  1768. share/afni/meica.libs/mdp/utils/_symeig.py
  1769. share/afni/meica.libs/mdp/utils/covariance.py
  1770. share/afni/meica.libs/mdp/utils/introspection.py
  1771. share/afni/meica.libs/mdp/utils/progress_bar.py
  1772. share/afni/meica.libs/mdp/utils/quad_forms.py
  1773. share/afni/meica.libs/mdp/utils/routines.py
  1774. share/afni/meica.libs/mdp/utils/slideshow.css
  1775. share/afni/meica.libs/mdp/utils/slideshow.py
  1776. share/afni/meica.libs/mdp/utils/templet.py
  1777. share/afni/meica.libs/mdp/utils/temporarydir.py
  1778. share/afni/meica.libs/nibabel/COMMIT_INFO.txt
  1779. share/afni/meica.libs/nibabel/__init__.py
  1780. share/afni/meica.libs/nibabel/affines.py
  1781. share/afni/meica.libs/nibabel/analyze.py
  1782. share/afni/meica.libs/nibabel/arrayproxy.py
  1783. share/afni/meica.libs/nibabel/arraywriters.py
  1784. share/afni/meica.libs/nibabel/batteryrunners.py
  1785. share/afni/meica.libs/nibabel/benchmarks/__init__.py
  1786. share/afni/meica.libs/nibabel/benchmarks/bench_load_save.py
  1787. share/afni/meica.libs/nibabel/casting.py
  1788. share/afni/meica.libs/nibabel/checkwarns.py
  1789. share/afni/meica.libs/nibabel/data.py
  1790. share/afni/meica.libs/nibabel/dft.py
  1791. share/afni/meica.libs/nibabel/ecat.py
  1792. share/afni/meica.libs/nibabel/environment.py
  1793. share/afni/meica.libs/nibabel/eulerangles.py
  1794. share/afni/meica.libs/nibabel/externals/__init__.py
  1795. share/afni/meica.libs/nibabel/externals/netcdf.py
  1796. share/afni/meica.libs/nibabel/externals/tests/__init__.py
  1797. share/afni/meica.libs/nibabel/externals/tests/test_netcdf.py
  1798. share/afni/meica.libs/nibabel/fileholders.py
  1799. share/afni/meica.libs/nibabel/filename_parser.py
  1800. share/afni/meica.libs/nibabel/freesurfer/__init__.py
  1801. share/afni/meica.libs/nibabel/freesurfer/io.py
  1802. share/afni/meica.libs/nibabel/freesurfer/mghformat.py
  1803. share/afni/meica.libs/nibabel/freesurfer/tests/__init__.py
  1804. share/afni/meica.libs/nibabel/freesurfer/tests/test_io.py
  1805. share/afni/meica.libs/nibabel/freesurfer/tests/test_mghformat.py
  1806. share/afni/meica.libs/nibabel/funcs.py
  1807. share/afni/meica.libs/nibabel/gifti/__init__.py
  1808. share/afni/meica.libs/nibabel/gifti/gifti.py
  1809. share/afni/meica.libs/nibabel/gifti/giftiio.py
  1810. share/afni/meica.libs/nibabel/gifti/parse_gifti_fast.py
  1811. share/afni/meica.libs/nibabel/gifti/tests/__init__.py
  1812. share/afni/meica.libs/nibabel/gifti/tests/data/ascii.gii
  1813. share/afni/meica.libs/nibabel/gifti/tests/data/base64bin.gii
  1814. share/afni/meica.libs/nibabel/gifti/tests/data/gzipbase64.gii
  1815. share/afni/meica.libs/nibabel/gifti/tests/data/label.gii
  1816. share/afni/meica.libs/nibabel/gifti/tests/data/rh.aparc.annot.gii
  1817. share/afni/meica.libs/nibabel/gifti/tests/data/rh.shape.curv.gii
  1818. share/afni/meica.libs/nibabel/gifti/tests/test_gifti.py
  1819. share/afni/meica.libs/nibabel/gifti/tests/test_giftiio.py
  1820. share/afni/meica.libs/nibabel/gifti/util.py
  1821. share/afni/meica.libs/nibabel/imageclasses.py
  1822. share/afni/meica.libs/nibabel/imageglobals.py
  1823. share/afni/meica.libs/nibabel/info.py
  1824. share/afni/meica.libs/nibabel/loadsave.py
  1825. share/afni/meica.libs/nibabel/minc.py
  1826. share/afni/meica.libs/nibabel/nicom/__init__.py
  1827. share/afni/meica.libs/nibabel/nicom/csareader.py
  1828. share/afni/meica.libs/nibabel/nicom/dicomreaders.py
  1829. share/afni/meica.libs/nibabel/nicom/dicomwrappers.py
  1830. share/afni/meica.libs/nibabel/nicom/dwiparams.py
  1831. share/afni/meica.libs/nibabel/nicom/structreader.py
  1832. share/afni/meica.libs/nibabel/nicom/tests/__init__.py
  1833. share/afni/meica.libs/nibabel/nicom/tests/data/csa2_b0.bin
  1834. share/afni/meica.libs/nibabel/nicom/tests/data/csa2_b1000.bin
  1835. share/afni/meica.libs/nibabel/nicom/tests/data/csa2_zero_len.bin.gz
  1836. share/afni/meica.libs/nibabel/nicom/tests/data/csa_slice_norm.dcm
  1837. share/afni/meica.libs/nibabel/nicom/tests/data/siemens_dwi_0.dcm.gz
  1838. share/afni/meica.libs/nibabel/nicom/tests/data/siemens_dwi_1000.dcm.gz
  1839. share/afni/meica.libs/nibabel/nicom/tests/data_pkgs.py
  1840. share/afni/meica.libs/nibabel/nicom/tests/test_csareader.py
  1841. share/afni/meica.libs/nibabel/nicom/tests/test_dicomreaders.py
  1842. share/afni/meica.libs/nibabel/nicom/tests/test_dicomwrappers.py
  1843. share/afni/meica.libs/nibabel/nicom/tests/test_dwiparams.py
  1844. share/afni/meica.libs/nibabel/nicom/tests/test_structreader.py
  1845. share/afni/meica.libs/nibabel/nifti1.py
  1846. share/afni/meica.libs/nibabel/onetime.py
  1847. share/afni/meica.libs/nibabel/optpkg.py
  1848. share/afni/meica.libs/nibabel/orientations.py
  1849. share/afni/meica.libs/nibabel/parrec.py
  1850. share/afni/meica.libs/nibabel/pkg_info.py
  1851. share/afni/meica.libs/nibabel/py3k.py
  1852. share/afni/meica.libs/nibabel/quaternions.py
  1853. share/afni/meica.libs/nibabel/spatialimages.py
  1854. share/afni/meica.libs/nibabel/spm2analyze.py
  1855. share/afni/meica.libs/nibabel/spm99analyze.py
  1856. share/afni/meica.libs/nibabel/testing/__init__.py
  1857. share/afni/meica.libs/nibabel/tests/__init__.py
  1858. share/afni/meica.libs/nibabel/tests/data/0.dcm
  1859. share/afni/meica.libs/nibabel/tests/data/1.dcm
  1860. share/afni/meica.libs/nibabel/tests/data/analyze.hdr
  1861. share/afni/meica.libs/nibabel/tests/data/example4d.nii.gz
  1862. share/afni/meica.libs/nibabel/tests/data/nifti1.hdr
  1863. share/afni/meica.libs/nibabel/tests/data/test.mgz
  1864. share/afni/meica.libs/nibabel/tests/data/tiny.mnc
  1865. share/afni/meica.libs/nibabel/tests/data/tinypet.v
  1866. share/afni/meica.libs/nibabel/tests/test_affines.py
  1867. share/afni/meica.libs/nibabel/tests/test_analyze.py
  1868. share/afni/meica.libs/nibabel/tests/test_arrayproxy.py
  1869. share/afni/meica.libs/nibabel/tests/test_arraywriters.py
  1870. share/afni/meica.libs/nibabel/tests/test_batteryrunners.py
  1871. share/afni/meica.libs/nibabel/tests/test_casting.py
  1872. share/afni/meica.libs/nibabel/tests/test_checkwarns.py
  1873. share/afni/meica.libs/nibabel/tests/test_data.py
  1874. share/afni/meica.libs/nibabel/tests/test_dft.py
  1875. share/afni/meica.libs/nibabel/tests/test_ecat.py
  1876. share/afni/meica.libs/nibabel/tests/test_endiancodes.py
  1877. share/afni/meica.libs/nibabel/tests/test_environment.py
  1878. share/afni/meica.libs/nibabel/tests/test_euler.py
  1879. share/afni/meica.libs/nibabel/tests/test_filehandles.py
  1880. share/afni/meica.libs/nibabel/tests/test_fileholders.py
  1881. share/afni/meica.libs/nibabel/tests/test_filename_parser.py
  1882. share/afni/meica.libs/nibabel/tests/test_files_interface.py
  1883. share/afni/meica.libs/nibabel/tests/test_floating.py
  1884. share/afni/meica.libs/nibabel/tests/test_funcs.py
  1885. share/afni/meica.libs/nibabel/tests/test_image_load_save.py
  1886. share/afni/meica.libs/nibabel/tests/test_minc.py
  1887. share/afni/meica.libs/nibabel/tests/test_nifti1.py
  1888. share/afni/meica.libs/nibabel/tests/test_orientations.py
  1889. share/afni/meica.libs/nibabel/tests/test_quaternions.py
  1890. share/afni/meica.libs/nibabel/tests/test_recoder.py
  1891. share/afni/meica.libs/nibabel/tests/test_round_trip.py
  1892. share/afni/meica.libs/nibabel/tests/test_scaling.py
  1893. share/afni/meica.libs/nibabel/tests/test_spatialimages.py
  1894. share/afni/meica.libs/nibabel/tests/test_spm2analyze.py
  1895. share/afni/meica.libs/nibabel/tests/test_spm99analyze.py
  1896. share/afni/meica.libs/nibabel/tests/test_trackvis.py
  1897. share/afni/meica.libs/nibabel/tests/test_utils.py
  1898. share/afni/meica.libs/nibabel/tests/test_wrapstruct.py
  1899. share/afni/meica.libs/nibabel/tmpdirs.py
  1900. share/afni/meica.libs/nibabel/trackvis.py
  1901. share/afni/meica.libs/nibabel/tripwire.py
  1902. share/afni/meica.libs/nibabel/volumeutils.py
  1903. share/afni/meica.libs/nibabel/wrapstruct.py
  1904. share/afni/meica.libs/select_model.py
  1905. share/afni/meica.libs/t2smap.py
  1906. share/afni/meica.libs/tedana.py
  1907. share/afni/shiny/3dMVM_validator_shiny/afni_funk.R
  1908. share/afni/shiny/3dMVM_validator_shiny/global.R
  1909. share/afni/shiny/3dMVM_validator_shiny/server.R
  1910. share/afni/shiny/3dMVM_validator_shiny/stat_functions.R
  1911. share/afni/shiny/3dMVM_validator_shiny/ui.R
  1912. share/afni/shiny/ClustExp_ShinyTemplate/afni_funk.R
  1913. share/afni/shiny/ClustExp_ShinyTemplate/global.R
  1914. share/afni/shiny/ClustExp_ShinyTemplate/lib_Rafni.R
  1915. share/afni/shiny/ClustExp_ShinyTemplate/server.R
  1916. share/afni/shiny/ClustExp_ShinyTemplate/stat_functions.R
  1917. share/afni/shiny/ClustExp_ShinyTemplate/ui.R
  1918. share/afni/shiny/FATCAT_matplot_shiny/global.R
  1919. share/afni/shiny/FATCAT_matplot_shiny/hclust_methods.csv
  1920. share/afni/shiny/FATCAT_matplot_shiny/server.R
  1921. share/afni/shiny/FATCAT_matplot_shiny/stat_methods.csv
  1922. share/afni/shiny/FATCAT_matplot_shiny/ui.R
  1923. share/afni/shiny/misc/OmicCircos_pkg_install.R
  1924. share/doc/afni/CMakeLists.txt
  1925. share/doc/afni/README
  1926. share/doc/afni/README.Ifile
  1927. share/doc/afni/README.afnigui
  1928. share/doc/afni/README.atlas_building
  1929. share/doc/afni/README.attributes
  1930. share/doc/afni/README.bzip2
  1931. share/doc/afni/README.changes
  1932. share/doc/afni/README.compression
  1933. share/doc/afni/README.copyright
  1934. share/doc/afni/README.driver
  1935. share/doc/afni/README.environment
  1936. share/doc/afni/README.func_types
  1937. share/doc/afni/README.notes
  1938. share/doc/afni/README.permtest
  1939. share/doc/afni/README.plugouts
  1940. share/doc/afni/README.realtime
  1941. share/doc/afni/README.registration
  1942. share/doc/afni/README.render_scripts
  1943. share/doc/afni/README.roi
  1944. share/doc/afni/README.setup
  1945. share/doc/afni/README.texlike
  1946. share/doc/afni/README.volreg
  1947. share/doc/afni/README.web
  1948. share/doc/afni/README.ziad
  1949. @owner
  1950. @group
  1951. @mode
Collapse this list.
Dependency lines:
  • afni>0:science/afni
Conflicts:
CONFLICTS:
  • im-[0-9]*
  • nifticlib-[0-9]*
  • open-usp-tukubai-[0-9]*
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port: cd /usr/ports/science/afni/ && make install clean
To add the package, run one of these commands:
  • pkg install science/afni
  • pkg install afni
PKGNAME: afni
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
afni
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd6421.2.0621.1.20
FreeBSD:11:armv6--
FreeBSD:11:i38621.2.0621.1.20
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd6421.3.0021.2.09
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i38621.3.0021.2.09
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd6421.3.0021.2.09
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i38621.3.0021.2.09
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd6421.3.00-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i38621.3.00-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gm4 : devel/m4
  2. R : math/R
  3. R-cran-lme4>0 : math/R-cran-lme4
  4. R-cran-snow>0 : science/R-cran-snow
  5. R-cran-psych>0 : math/R-cran-psych
  6. msgfmt : devel/gettext-tools
  7. gmake>=4.3 : devel/gmake
  8. python3.8 : lang/python38
  9. xorgproto>=0 : x11/xorgproto
  10. xorgproto>=0 : x11/xorgproto
  11. x11.pc : x11/libX11
  12. xext.pc : x11/libXext
  13. xi.pc : x11/libXi
  14. xmu.pc : x11-toolkits/libXmu
  15. xt.pc : x11-toolkits/libXt
  16. xpm.pc : x11/libXpm
  17. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. endian : sysutils/endian
  2. mpeg_encode : multimedia/mpeg_encode
  3. qhull : math/qhull
  4. R : math/R
  5. R-cran-lme4>0 : math/R-cran-lme4
  6. R-cran-snow>0 : science/R-cran-snow
  7. R-cran-psych>0 : math/R-cran-psych
  8. cjpeg : graphics/jpeg-turbo
  9. python3.8 : lang/python38
  10. x11.pc : x11/libX11
  11. xext.pc : x11/libXext
  12. xi.pc : x11/libXi
  13. xmu.pc : x11-toolkits/libXmu
  14. xt.pc : x11-toolkits/libXt
  15. xpm.pc : x11/libXpm
  16. perl5>=5.32.r0<5.33 : lang/perl5.32
Library dependencies:
  1. libexpat.so : textproc/expat2
  2. libf2c.so : lang/f2c
  3. libgsl.so : math/gsl
  4. libnetcdff.so : science/netcdf-fortran
  5. libxml2.so : textproc/libxml2
  6. libXm.so : x11-toolkits/open-motif
  7. libnetpbm.so : graphics/netpbm
  8. libintl.so : devel/gettext-runtime
  9. libGL.so : graphics/libglvnd
  10. libGLU.so : graphics/libGLU
  11. libglib-2.0.so : devel/glib20
  12. libintl.so : devel/gettext-runtime
  13. libXm.so.4 : x11-toolkits/open-motif
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

pkg-message:
If installing:
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/afni/afni/tar.gz/AFNI_21.3.00?dummy=/
Collapse this list.

Number of commits found: 155 (showing only 100 on this page)

1 | 2  »  

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
22 Oct 2021 11:42:20
 files touched by this commit commit hash:cb177d8463fe78539116f2594a3d9a1c7da6b2d0  21.3.00
pkubaj search for other commits by this committer
science/afni: fix build on non-x86

fpsetprec() is only on amd64 and i386 and requires x87 FPU. It's possible to
build without x87, just how it's done on Linux.
11 Oct 2021 16:20:11
 files touched by this commit commit hash:e2f9834e633b2d9eacfacdfe78f6f0d45b5a9cbf  21.3.00
fernape search for other commits by this committer
science/afni: update to 21.3.00
06 Oct 2021 07:19:56
 files touched by this commit commit hash:4e6062a59c784443363d14a0ee2e19144aec3599  21.2.10
fernape search for other commits by this committer
science/afni: update to 21.2.10
01 Oct 2021 05:41:12
 files touched by this commit commit hash:292ec73c279ffcbb670c6a6d3a66a776bbe889bb  21.2.09
fernape search for other commits by this committer
science/afni: update to 21.2.09
12 Sep 2021 13:58:20
 files touched by this commit commit hash:71ac81015e41d55819d25c3ccc61b002205bf9be  21.2.06
fernape search for other commits by this committer
science/afni: update to 21.2.06

 * Remove openmp support. We don't seem to need it.
 * Adjust patch
 * Add -fcommon to make it build in 13 and 14-current
 * Add patch to include -DPIC -fPIC in i386. Otherwise we get:

ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.13 in
readonly segment
20 Jul 2021 17:35:08
 files touched by this commit commit hash:2bee1caa54945706afe55cdd3a70c382b849fe4c  21.2.01
fernape search for other commits by this committer
science/afni: update to 21.2.01
14 Jul 2021 04:22:30
 files touched by this commit commit hash:120163f680b3040648c8d38574105d52ba475c02  21.2.00
nc search for other commits by this committer
science/afni: Update to 21.2.00
29 Jun 2021 20:45:33
 files touched by this commit commit hash:d6fa85db30df74564f9f0227288ca5d49beaa4b6  21.1.20
fernape search for other commits by this committer
science/afni: update to 21.1.20
29 Jun 2021 13:44:35
 files touched by this commit commit hash:c4a4d868413e3d1a19e0cc0a15313b4dd28dd0cd  21.1.19
fernape search for other commits by this committer
science/afni: update to 21.1.19
24 Jun 2021 18:02:04
 files touched by this commit commit hash:1f1f18aa2e9d865413d608d6f076167518803e9d  21.1.16
fernape search for other commits by this committer
science/afni: update to 21.1.16
23 Jun 2021 06:55:27
 files touched by this commit commit hash:62516dbeee04d28f409452c1b43e6f509f70788e  21.1.13
fernape search for other commits by this committer
science/afni: update to 21.1.13
22 Jun 2021 18:53:08
 files touched by this commit commit hash:da3162c7c9f01912ba1940e188b253f2b5c7ba77  21.1.12_2
kbowling search for other commits by this committer
graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824
16 Jun 2021 19:31:27
 files touched by this commit commit hash:63e653adaa7493aa98f17f9fbc834c0aed7e096e  21.1.12_1
tcberner search for other commits by this committer
math/gsl: update to 2.7

From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6
(Only the first 15 lines of the commit message are shown above View all of this commit message)
16 Jun 2021 07:48:05
 files touched by this commit commit hash:de8f362148ee5793194ae5b8d4ec9c20f53cbc6f  21.1.12
fernape search for other commits by this committer
science/afni: update to 21.1.12
31 May 2021 20:54:09
 files touched by this commit commit hash:b15c2396c6807c1f5b54111627023df1ff8ed2b7  21.1.09
fernape search for other commits by this committer
science/afni: update to 21.1.09
27 May 2021 05:36:51
 files touched by this commit commit hash:5b1a8896555a101f99b52217c3c717921cace949  21.1.08
fernape search for other commits by this committer
science/afni: update to 21.1.08
13 May 2021 12:19:19
 files touched by this commit commit hash:e86a7891a7114626e9cbec891f30b5f95a3f0198  21.1.07
fernape search for other commits by this committer
science/afni: update to 21.1.07
09 May 2021 15:54:56
 files touched by this commit commit hash:90697f109a94b9ab78a785f73981788caae54ec4  21.1.06
fernape search for other commits by this committer
science/afni: update to 21.1.06
07 May 2021 07:37:36
 files touched by this commit commit hash:eea49ad365b0800327dbf7f54f6bea735c08bdf1  21.1.04
fernape search for other commits by this committer
science/afni: update to 21.1.04
30 Apr 2021 07:03:47
 files touched by this commit commit hash:bc5a5fbbeff5ac6ea89d6675f9312ca2fce72431  21.1.03
fernape search for other commits by this committer
science/afni: update to 21.1.03
18 Apr 2021 18:21:42
 files touched by this commit commit hash:68a233c30aca780b0f7ff9cb9e1ef929cd513983  21.1.02
fernape search for other commits by this committer
science/afni: update to 21.1.02
11 Apr 2021 15:37:05
 files touched by this commit commit hash:70207782ab13b1d6505d7240a055d71bd3cafe2a  21.1.01
fernape search for other commits by this committer
science/afni: update to 21.1.01
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  21.1.00
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
07 Apr 2021 07:02:57
 files touched by this commit commit hash:f2e32f002de44e8c92bb7f6c8a1c93ea05255900  21.1.00
fernape search for other commits by this committer
science/afni: update to 21.1.00
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  21.0.21
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
28 Mar 2021 07:56:12
Original commit files touched by this commit Revision:569378  21.0.21
fernape search for other commits by this committer
science/afni: update to 21.0.21
18 Mar 2021 16:36:28
Original commit files touched by this commit Revision:568750  21.0.20
fernape search for other commits by this committer
science/afni: update to 21.0.20

While here, adopt port.

Reported by:	portscout
17 Mar 2021 16:37:44
Original commit files touched by this commit Revision:568676  21.0.19
fernape search for other commits by this committer
science/afni: update to 21.0.19

Reported by:	portscout
16 Mar 2021 19:13:51
Original commit files touched by this commit Revision:568604  21.0.18
nc search for other commits by this committer
science/afni: Update to 21.0.18
15 Mar 2021 07:54:40
Original commit files touched by this commit Revision:568439  21.0.17
fernape search for other commits by this committer
science/afni: update to 21.0.17

Reported by:	portscout
12 Mar 2021 07:56:00
Original commit files touched by this commit Revision:568145  21.0.16
fernape search for other commits by this committer
science/afni: update to 21.0.16

Reported by:	portscout
11 Mar 2021 08:21:25
Original commit files touched by this commit Revision:568069  21.0.15
fernape search for other commits by this committer
science/afni: update to 21.0.15

Reported by:	portscout
09 Mar 2021 08:50:51
Original commit files touched by this commit Revision:567907  21.0.14
fernape search for other commits by this committer
science/afni: update to 21.0.14

Reported by:	portscout
05 Mar 2021 06:09:35
Original commit files touched by this commit Revision:567366  21.0.13
nc search for other commits by this committer
science/afni: Update to 21.0.13
01 Mar 2021 09:36:46
Original commit files touched by this commit Revision:566844  21.0.12
fernape search for other commits by this committer
science/afni: update to 21.0.12

Reported by:	portscout
24 Feb 2021 12:26:32
Original commit files touched by this commit Revision:566472  21.0.10
fernape search for other commits by this committer
science/afni: update to 21.0.10

Reported by:	portscout
23 Feb 2021 23:18:39
Original commit files touched by this commit Revision:566432  21.0.09
nc search for other commits by this committer
science/afni: Update to 21.0.09
12 Feb 2021 22:36:58
Original commit files touched by this commit Revision:565074  21.0.08
fernape search for other commits by this committer
science/afni: update to 21.0.08

Reported by:	portscout
09 Feb 2021 22:12:49
Original commit files touched by this commit Revision:564824  21.0.07
nc search for other commits by this committer
science/afni: Update to 21.0.07
28 Jan 2021 12:53:39
Original commit files touched by this commit Revision:563134  21.0.06
fernape search for other commits by this committer
science/afni: update to 21.0.6

Reported by:	portscout
20 Jan 2021 09:27:22
Original commit files touched by this commit Revision:562124  21.0.04
fernape search for other commits by this committer
science/afni: update to 21.0.04

Reported by:	portscout
17 Jan 2021 08:37:42
Original commit files touched by this commit Revision:561806  21.0.03
fernape search for other commits by this committer
science/afni: update to 21.0.03

Reported by:	portscout
13 Jan 2021 14:23:49
Original commit files touched by this commit Revision:561469  21.0.02
fernape search for other commits by this committer
science/afni: update to 21.0.02

Reported by:	portscout
10 Jan 2021 08:34:20
Original commit files touched by this commit Revision:561024  21.0.00
fernape search for other commits by this committer
science/afni: update to 21.0.00

Reported by:	portscout
04 Jan 2021 15:33:02
Original commit files touched by this commit Revision:560299  20.3.04_1
rene search for other commits by this committer
science/afni: use math/qhull instead of expired math/qhull5
27 Dec 2020 13:06:51
Original commit files touched by this commit Revision:559359  20.3.04
fernape search for other commits by this committer
science/afni: update to 20.3.04

Reported by:	portscout
10 Dec 2020 14:21:22
Original commit files touched by this commit Revision:557438  20.3.03
fernape search for other commits by this committer
science/afni: update to 20.3.03

Reported by:	portscout
15 Nov 2020 17:24:55
Original commit files touched by this commit Revision:555239  20.3.02
fernape search for other commits by this committer
science/afni: update to 20.3.02

Reported by:	portscout
04 Oct 2020 12:07:53
Original commit files touched by this commit Revision:551387  20.3.00
fernape search for other commits by this committer
science/afni: update to 20.3.00

Reported by:	portscout
30 Sep 2020 11:11:44
Original commit files touched by this commit Revision:550682  20.2.19
fernape search for other commits by this committer
science/afni: update to 20.2.19

Reported by:	portscout
22 Sep 2020 17:43:09
Original commit files touched by this commit Revision:549616  20.2.18
fernape search for other commits by this committer
science/afni: update to 20.2.18

Reported by:	portscout
03 Sep 2020 07:16:21
Original commit files touched by this commit Revision:547424  20.2.16
fernape search for other commits by this committer
science/afni: update to 20.2.16

Many utilities are not provided anymore. Most of them are marked in
src/Makefile.INCLUDE under the comment "not distributed 25 Aug 2020"

Others are not marked like that, but they are not shipped anyway, like
3dAnatNudge which has a comment that explains why:

"This program (3dAnatNudge) is old, obsolete, and not maintained!"

Reported by:	portscout
22 Aug 2020 17:32:58
Original commit files touched by this commit Revision:545778  20.2.14
fernape search for other commits by this committer
science/afni: update to 20.2.14

Reported by:	portscout
20 Aug 2020 15:57:33
Original commit files touched by this commit Revision:545537  20.2.13
fernape search for other commits by this committer
science/afni: update to 20.2.13

Reported by:	portscout
19 Aug 2020 10:46:34
Original commit files touched by this commit Revision:545304  20.2.12
fernape search for other commits by this committer
science/afni: update to 20.2.12

Reported by:	portscout
13 Aug 2020 05:44:11
Original commit files touched by this commit Revision:544785  20.2.11
fernape search for other commits by this committer
science/afni: update to 20.2.11

Reported by:	portscout
03 Aug 2020 17:02:26
Original commit files touched by this commit Revision:544086  20.2.08
fernape search for other commits by this committer
science/afni: update to 20.2.08

Reported by:	portscout
29 Jul 2020 16:10:22
Original commit files touched by this commit Revision:543667  20.2.06
fernape search for other commits by this committer
science/afni: update to 20.2.06

Reported by:	portscout
22 Jul 2020 06:19:32
Original commit files touched by this commit Revision:542835  20.2.05
fernape search for other commits by this committer
science/afni: update to 20.2.05

Reported by:	portscout
08 Jul 2020 10:40:39
Original commit files touched by this commit Revision:541484  20.2.00
fernape search for other commits by this committer
science/afni: update to 20.2.00

Reported by:	portscout
02 Jul 2020 06:55:50
Original commit files touched by this commit Revision:541016  20.1.18
fernape search for other commits by this committer
science/afni: update to 20.1.18

While here:

 * Reorder some variables
 * Remove duplicate USE_GL

Reported by:	portscout
21 Jun 2020 14:43:49
Original commit files touched by this commit Revision:539768  20.1.17
pi search for other commits by this committer
science/afni: update 20.1.16 -> 20.1.17

Reported by:	portscout
19 Jun 2020 06:55:14
Original commit files touched by this commit Revision:539593  20.1.16
fernape search for other commits by this committer
science/afni: update to 20.1.16

Reported by:	portscout
16 Jun 2020 06:31:27
Original commit files touched by this commit Revision:539327  20.1.15
fernape search for other commits by this committer
science/afni: update to 20.1.15

Reported by:	portscout
12 Jun 2020 09:25:02
Original commit files touched by this commit Revision:538590  20.1.14
fernape search for other commits by this committer
science/afni: Update to 20.1.14

Reported by:	portscout
04 Jun 2020 16:49:57
Original commit files touched by this commit Revision:537910  20.1.13
fernape search for other commits by this committer
science/afni: update to 20.1.13

Reported by:	portscout
03 Jun 2020 14:44:25
Original commit files touched by this commit Revision:537616  20.1.12
fernape search for other commits by this committer
science/afni: update to 20.1.12

Reported by:	portscout
29 May 2020 15:20:45
Original commit files touched by this commit Revision:536977  20.1.11
fernape search for other commits by this committer
science/afni: update to 20.1.11

Reported by:	portscout
27 May 2020 16:11:57
Original commit files touched by this commit Revision:536698  20.1.10
fernape search for other commits by this committer
science/afni: update to 20.1.10

Reported by:	portscout
26 May 2020 05:45:24
Original commit files touched by this commit Revision:536571  20.1.07
fernape search for other commits by this committer
science/afni: update to 20.1.07

Reported by:	portscout
18 May 2020 01:29:41
Original commit files touched by this commit Revision:535703  20.1.06
linimon search for other commits by this committer
Mark as BROKEN on powerpc64:

  ./predicates_init.c:46: error: implicit declaration of function 'fpsetprec'

While here, remove OBE sparc64 stanza.
06 May 2020 08:22:40
Original commit files touched by this commit Revision:534153  20.1.06
fernape search for other commits by this committer
science/afni: update to 20.1.06

Reported by:	portscout
05 May 2020 16:07:54
Original commit files touched by this commit Revision:534095  20.1.05_1
jrm search for other commits by this committer
math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572
30 Apr 2020 15:03:17
Original commit files touched by this commit Revision:533460  20.1.05
fernape search for other commits by this committer
science/afni: update to 20.1.05

Reported by:	portscout
29 Apr 2020 06:55:48
Original commit files touched by this commit Revision:533317  20.1.03
fernape search for other commits by this committer
science/afni: update to 20.1.03

Reported by:	portscout
23 Apr 2020 06:34:33
Original commit files touched by this commit Revision:532646  20.1.02
fernape search for other commits by this committer
science/afni: update to 20.1.02

Reported by:	portscout
20 Apr 2020 12:21:49
Original commit files touched by this commit Revision:532202  20.1.01
jwb search for other commits by this committer
science/afni: Upgrade to 20.1.02

Added some common R-cran run dependencies
Removed obsolete reinplace patches
Improved do-install to better fit filesystem hierarchy
Releasing maintainership as I no longer work with any AFNI users

Reported by:    portscout
25 Oct 2019 23:41:34
Original commit files touched by this commit Revision:515671  19.1.20_4
tcberner search for other commits by this committer
math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
28 Sep 2019 10:56:15
Original commit files touched by this commit Revision:513115  19.1.20_3
zeising search for other commits by this committer
science/afni: Remove dependency on libXp

Remove dependency on libXp from science/afni, it is not needed, and libXp is
being deprecated.
Remove deprecation from science/afni
27 Sep 2019 16:18:59
Original commit files touched by this commit Revision:513046  19.1.20_2
zeising search for other commits by this committer
Deprecate x11/libXp, it is deprecated upstream

Deprecate x11/libXp, since it is about to be deprecated upstream.  Do *not*
yet set a removal date for x11/libXp, this will be decided later, once most
dependencies are fixed.
Deprecate all ports depending on x11/libXp.
* astro/xephem
* audio/xmcd
* audio/xmmix
* biology/ncbi-toolkit
* deskutils/xmdiary
* ftp/llnlxdir
* ftp/llnlxftp
* graphics/SciPlot
* misc/xtar
* multimedia/mpeg2play
* science/afni
* textproc/mgdiff

Sprinkle USES=xorg as needed.

Discussed with:	bapt
31 Aug 2019 17:11:57
Original commit files touched by this commit Revision:510405  19.1.20_2
sunpoet search for other commits by this committer
Bump PORTREVISION for science/netcdf-fortran shlib change
14 Aug 2019 12:16:13
Original commit files touched by this commit Revision:508909  19.1.20_1
mat search for other commits by this committer
Convert to UCL & cleanup pkg-message (categories s)
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  19.1.20_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
18 Jun 2019 19:00:55
Original commit files touched by this commit Revision:504496  19.1.20
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.20

Upstreamed FreeBSD patches, other minor fixes and enhancements

Reported by:    portscout, Rick Reynolds (NIH)
08 Jun 2019 19:14:18
Original commit files touched by this commit Revision:503747  19.1.18
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.18

Minor bugfixes/enhancements
01 Jun 2019 12:59:52
Original commit files touched by this commit Revision:503233  19.1.14
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.14

Minor bug fixes and enhancements, some FreeBSD patches upstreamed
22 May 2019 12:44:17
Original commit files touched by this commit Revision:502266  19.1.10
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.10

Rapid response from upstream on reported issue.  Additional patches to be
upstreamed in next release.
20 May 2019 19:35:57
Original commit files touched by this commit Revision:502158  19.1.08
jwb search for other commits by this committer
science/afni: Upgrade to 19.1.08

Switch from personal dist snapshots to Github releases
Improve staging procedure to preserve results of build phase
Temporarily use bundled GLw pending fix of libglw port
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  2015.11.13_8
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
10 Sep 2018 13:14:52
Original commit files touched by this commit Revision:479406  2015.11.13_7
mat search for other commits by this committer
Add DOCS options to ports that should have one.

Also various fixes related to said option.

PR:		230864
Submitted by:	mat
exp-runs by:	antoine
23 Jun 2018 08:27:14
Original commit files touched by this commit Revision:473116  2015.11.13_7
tcberner search for other commits by this committer
Update math/gsl to 2.5

PR:		229067
10 Mar 2018 17:46:06
Original commit files touched by this commit Revision:464084  2015.11.13_6
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
31 Jan 2018 01:07:08
Original commit files touched by this commit Revision:460452  2015.11.13_5
jwb search for other commits by this committer
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
19 Dec 2017 14:41:29
Original commit files touched by this commit Revision:456719  2015.11.13_5
linimon search for other commits by this committer
Mark more recently failing ports broken on aarch64.

While here, pet portlint and reformat some other BROKEN statements.

Approved by:	portmgr (tier-2 blanket)
24 Jul 2017 18:26:39
Original commit files touched by this commit Revision:446540  2015.11.13_5
pawel search for other commits by this committer
After r446199 libR.so has SONAME and was made visible for
consumer ports. Register correct dependency by using LIB_DEPENDS
instead of BUILD|RUN_DEPENDS dance.

math/rkward-kde4:
- Add 2 missing files to pkg-plist also

PR:		219776
Submitted by:	myself
Approved by:	maintainers timeouts
03 Jul 2017 20:38:12
Original commit files touched by this commit Revision:444988  2015.11.13_5
tcberner search for other commits by this committer
Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408
23 May 2017 05:03:16
Original commit files touched by this commit Revision:441503  2015.11.13_4
rezny search for other commits by this committer
Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
04 May 2017 05:26:01
Original commit files touched by this commit Revision:440090  2015.11.13_3
tcberner search for other commits by this committer
Fix shebangs

Reviewed by:		mat
Approved by:		mat (mentor)
Differential Revision:	https://reviews.freebsd.org/D10527
02 May 2017 05:26:40
Original commit files touched by this commit Revision:439928  2015.11.13_2
tcberner search for other commits by this committer
Update math/gsl to 2.3

This release introduces some new features and fixes several bugs:
	http://savannah.gnu.org/forum/forum.php?forum_id=8751

* update to 2.3 and take maintainership
* update math/py-gsl to 2.2.0 for gsl2 support
* update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support

PR:		218952
Exp-run by:	antoine
Reviewed by:	mat, rakuco
Approved by:	rakuco (mentor)
Differential Revision:	https://reviews.freebsd.org/D10522
29 Nov 2016 21:15:41
Original commit files touched by this commit Revision:427397  2015.11.13_1
jrm search for other commits by this committer
science/afni: Use BUILD_DEPENDS/RUN_DEPENDS instead of LIB_DEPENDS for
math/R, because R may be configured without libR.

While here, fix some stage-qa warnings about indirect dependencies.

Reviewed by:	AMDmi3
Approved by:	bacon4000@gmail.com (maintainer) swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8649

Number of commits found: 155 (showing only 100 on this page)

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