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Port details
avogadro2 Chemical editor and visualization application
1.94.0_1 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.94.0_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-17 01:04:52
Last Update: 2021-06-22 18:53:08
Commit Hash: da3162c
License: BSD3CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (8 items)
Collapse this list.
  1. bin/avogadro2
  2. share/applications/avogadro2.desktop
  3. share/pixmaps/avogadro2.png
  4. @desktop-file-utils
  5. @ldconfig
  6. /usr/local/share/licenses/avogadro2-1.94.0_1/catalog.mk
  7. /usr/local/share/licenses/avogadro2-1.94.0_1/LICENSE
  8. /usr/local/share/licenses/avogadro2-1.94.0_1/BSD3CLAUSE
Collapse this list.
Dependency lines:
  • avogadro2>0:science/avogadro2
To install the port: cd /usr/ports/science/avogadro2/ && make install clean
To add the package, run one of these commands:
  • pkg install science/avogadro2
  • pkg install avogadro2
PKGNAME: avogadro2
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
avogadro2
ABIlatestquarterly
FreeBSD:11:aarch64-1.93.0
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-1.94.0_1
FreeBSD:12:amd641.94.0_11.94.0_1
FreeBSD:12:armv6-1.93.0
FreeBSD:12:armv7-1.93.0
FreeBSD:12:i3861.94.0_11.94.0_1
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-1.93.0
FreeBSD:13:aarch641.93.01.94.0_1
FreeBSD:13:amd641.94.0_11.94.0_1
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3861.94.0_11.94.0_1
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch641.94.0_1-
FreeBSD:14:amd641.94.0_1-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3861.94.0_1-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc641.93.0-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. hdf5>0 : science/hdf5
  2. cmake : devel/cmake
  3. ninja : devel/ninja
  4. update-desktop-database : devel/desktop-file-utils
  5. xorgproto>=0 : x11/xorgproto
  6. xorgproto>=0 : x11/xorgproto
  7. qt5-buildtools>=5.15.2 : devel/qt5-buildtools
  8. qt5-qmake>=5.15.2 : devel/qt5-qmake
Runtime dependencies:
  1. update-desktop-database : devel/desktop-file-utils
Library dependencies:
  1. libAvogadroCore.so : science/avogadrolibs
  2. libMoleQueueClient.so : misc/molequeue
  3. libGL.so : graphics/libglvnd
  4. libGLEW.so : graphics/glew
  5. libGLU.so : graphics/libGLU
  6. libarchive.so.13 : archivers/libarchive
  7. libQt5Concurrent.so : devel/qt5-concurrent
  8. libQt5Core.so : devel/qt5-core
  9. libQt5Gui.so : x11-toolkits/qt5-gui
  10. libQt5Network.so : net/qt5-network
  11. libQt5Widgets.so : x11-toolkits/qt5-widgets
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/OpenChemistry/avogadroapp/tar.gz/1.94.0?dummy=/
Collapse this list.
Port Moves
  • port moved here from science/avogadro on 2019-03-16
    REASON: Has expired: Qt4 has been EOL since december 2015, the new generation, avogadro2, should be used

Number of commits found: 12

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
22 Jun 2021 18:53:08
 files touched by this commit commit hash:da3162c7c9f01912ba1940e188b253f2b5c7ba77  1.94.0_1
kbowling search for other commits by this committer
graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824
04 Jun 2021 18:28:22
 files touched by this commit commit hash:5f3f4ccb7d5e6c446ca9198158920b47a22adbc0  1.94.0
yuri search for other commits by this committer
science/avogadro2: Update 1.93.0 -> 1.94.0
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  1.93.0
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.93.0
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
06 Feb 2020 07:09:42
Original commit files touched by this commit Revision:525365  1.93.0
yuri search for other commits by this committer
science/avogadro2: Update 1.91.0 -> 1.93.0

Reported by:	portscout
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  1.91.0_5
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
16 Jan 2019 11:13:45
Original commit files touched by this commit Revision:490472  1.91.0_4
tijl search for other commits by this committer
Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call
(Only the first 15 lines of the commit message are shown above View all of this commit message)
05 Jan 2019 22:46:54
Original commit files touched by this commit Revision:489412  1.91.0_3
sunpoet search for other commits by this committer
Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen
25 Dec 2018 20:25:40
Original commit files touched by this commit Revision:488341  1.91.0_2
tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  1.91.0_2
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
18 Oct 2018 22:31:27
Original commit files touched by this commit Revision:482387  1.91.0_1
yuri search for other commits by this committer
science/avogadrolibs: Update 1.91.0 -> 1.91.0-107

jsoncpp isn't used any more, mmtf is now used.
17 Oct 2018 01:04:42
Original commit files touched by this commit Revision:482266  1.91.0
yuri search for other commits by this committer
New port: science/avogadro2: Chemical editor and visualization application

Number of commits found: 12