Port details |
- avogadro2 Chemical editor and visualization application
- 1.93.0 science
=0 1.93.0Version of this port present on the latest quarterly branch.- Maintainer: yuri@FreeBSD.org
 - Port Added: 2018-10-17 01:04:52
- Last Update: 2020-02-06 07:09:42
- SVN Revision: 525365
- License: BSD3CLAUSE
- Description:
- Avogadro 2 is a chemical editor and visualization application, it is also a set
of reusable software libraries written in C++ using principles of modularity for
maximum reuse. The development of the first generation Avogadro application and
library is documented in our paper, and this remains the preferred method of
citation at present. The motivation for rewriting Avogadro, along with
improvements and changes made in Avogadro 2 are summarized in our Source
article. We provide a set of permissively licensed, open source, cross platform
software components in the Avogadro 2 libraries, along with an end-user
application with full source code, and binaries.
The library features updated and improved rendering, where we built upon the
abstraction provided by previous API, but implemented a simple scene graph. This
makes use of features such as impostor sphere rendering, resulting in
significant rendering speed improvements while improving the quality of the
visualization. The core is built for scalability, looking to enable the analysis
of larger chemical structures and simulations being produced by computational
chemistry codes today. Emphasis has also been placed on making it even easier to
extend, using simple Python scripts to add simulation input capabilities, and
data input/output along with access to full-blown C++ plugin APIs where more
control is required.
WWW: https://www.openchemistry.org/projects/avogadro2/
- SVNWeb : Homepage
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- avogadro2>0:science/avogadro2
- To install the port:
cd /usr/ports/science/avogadro2/ && make install clean - To add the package:
pkg install avogadro2 - PKGNAME: avogadro2
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1580972413
SHA256 (OpenChemistry-avogadroapp-1.93.0_GH0.tar.gz) = 8cf913058aff58fe588531618a680d82401fbfe3f21e4783a44979f4a2dd5586
SIZE (OpenChemistry-avogadroapp-1.93.0_GH0.tar.gz) = 2905461
Packages: (move your mouse over the cells for more information)
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- hdf5>0 : science/hdf5
- cmake : devel/cmake
- ninja : devel/ninja
- update-desktop-database : devel/desktop-file-utils
- xorgproto>=0 : x11/xorgproto
- xorgproto>=0 : x11/xorgproto
- moc : devel/qt5-buildtools
- qmake : devel/qt5-qmake
- Runtime dependencies:
-
- update-desktop-database : devel/desktop-file-utils
- Library dependencies:
-
- libAvogadroCore.so : science/avogadrolibs
- libMoleQueueClient.so : misc/molequeue
- libGL.so : graphics/mesa-libs
- libGLEW.so : graphics/glew
- libGLU.so : graphics/libGLU
- libarchive.so.13 : archivers/libarchive
- libQt5Concurrent.so : devel/qt5-concurrent
- libQt5Core.so : devel/qt5-core
- libQt5Gui.so : x11-toolkits/qt5-gui
- libQt5Network.so : net/qt5-network
- libQt5Widgets.so : x11-toolkits/qt5-widgets
- There are no ports dependent upon this port
- Configuration Options
- No options to configure
- USES:
- cmake compiler:c++11-lang desktop-file-utils gl libarchive qt:5 xorg
- Master Sites:
-
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Port Moves |
- port moved here from science/avogadro on 2019-03-16
REASON: Has expired: Qt4 has been EOL since december 2015, the new generation, avogadro2, should be used
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Number of commits found: 8
Commit History - (may be incomplete: see SVNWeb link above for full details) |
Date | By | Description |
06 Feb 2020 07:09:42
1.93.0

|
yuri  |
science/avogadro2: Update 1.91.0 -> 1.93.0
Reported by: portscout |
26 Jul 2019 20:46:57
1.91.0_5

|
gerald  |
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330 |
16 Jan 2019 11:13:45
1.91.0_4

|
tijl  |
Fix Qt5 symbol version scripts to put the catch-all clause first. When
a symbol matches multiple clauses the last one takes precedence. If the
catch-all is last it captures everything. In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API. This only affects lld because GNU ld always gives the
catch-all lowest priority.
Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium. Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3] The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one. If there's no such non-weak symbol the call (Only the first 15 lines of the commit message are shown above ) |
05 Jan 2019 22:46:54
1.91.0_3

|
sunpoet  |
Update science/hdf5 to 1.10.4
- Bump PORTREVISION of dependent ports for shlib change
Changes: https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR: 233070
Submitted by: wen |
25 Dec 2018 20:25:40
1.91.0_2

|
tcberner  |
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine |
12 Dec 2018 01:35:36
1.91.0_2

|
gerald  |
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590 |
18 Oct 2018 22:31:27
1.91.0_1

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yuri  |
science/avogadrolibs: Update 1.91.0 -> 1.91.0-107
jsoncpp isn't used any more, mmtf is now used. |
17 Oct 2018 01:04:42
1.91.0

|
yuri  |
New port: science/avogadro2: Chemical editor and visualization application |
Number of commits found: 8
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Latest Vulnerabilities |
13 vulnerabilities affecting 98 ports have been reported in the past 14 days
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* - modified, not new All vulnerabilities
Last updated: 2021-02-27 01:52:12
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