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Port details
clipper Libraries for the organisation of crystallographic data
2.1.20180802_3 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.1.20180802_3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-08 01:30:02
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
License: LGPL3
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (114 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/clipper-2.1.20180802_3/catalog.mk
  3. /usr/local/share/licenses/clipper-2.1.20180802_3/LICENSE
  4. /usr/local/share/licenses/clipper-2.1.20180802_3/LGPL3
  5. include/clipper/ccp4/ccp4_map_io.h
  6. include/clipper/ccp4/ccp4_mtz_io.h
  7. include/clipper/ccp4/ccp4_mtz_types.h
  8. include/clipper/ccp4/ccp4_utils.h
  9. include/clipper/cif/cif_data_io.h
  10. include/clipper/clipper-ccp4.h
  11. include/clipper/clipper-cctbx.h
  12. include/clipper/clipper-cif.h
  13. include/clipper/clipper-cns.h
  14. include/clipper/clipper-contrib.h
  15. include/clipper/clipper-minimol.h
  16. include/clipper/clipper-mmdb.h
  17. include/clipper/clipper-phs.h
  18. include/clipper/clipper.h
  19. include/clipper/cns/cns_hkl_io.h
  20. include/clipper/cns/cns_map_io.h
  21. include/clipper/contrib/convolution_search.h
  22. include/clipper/contrib/edcalc.h
  23. include/clipper/contrib/fffear.h
  24. include/clipper/contrib/function_object_bases.h
  25. include/clipper/contrib/mapfilter.h
  26. include/clipper/contrib/originmatch.h
  27. include/clipper/contrib/sfcalc.h
  28. include/clipper/contrib/sfcalc_obs.h
  29. include/clipper/contrib/sfscale.h
  30. include/clipper/contrib/sfweight.h
  31. include/clipper/contrib/skeleton.h
  32. include/clipper/contrib/test_contrib.h
  33. include/clipper/core/atomsf.h
  34. include/clipper/core/cell.h
  35. include/clipper/core/clipper_instance.h
  36. include/clipper/core/clipper_memory.h
  37. include/clipper/core/clipper_message.h
  38. include/clipper/core/clipper_precision.h
  39. include/clipper/core/clipper_stats.h
  40. include/clipper/core/clipper_sysdep.h
  41. include/clipper/core/clipper_test.h
  42. include/clipper/core/clipper_thread.h
  43. include/clipper/core/clipper_types.h
  44. include/clipper/core/clipper_util.h
  45. include/clipper/core/container.h
  46. include/clipper/core/container_hkl.h
  47. include/clipper/core/container_map.h
  48. include/clipper/core/container_types.h
  49. include/clipper/core/coords.h
  50. include/clipper/core/derivs.h
  51. include/clipper/core/fftmap.h
  52. include/clipper/core/fftmap_sparse.h
  53. include/clipper/core/hkl_compute.h
  54. include/clipper/core/hkl_data.h
  55. include/clipper/core/hkl_datatypes.h
  56. include/clipper/core/hkl_info.h
  57. include/clipper/core/hkl_lookup.h
  58. include/clipper/core/hkl_operators.h
  59. include/clipper/core/map_interp.h
  60. include/clipper/core/map_utils.h
  61. include/clipper/core/nxmap.h
  62. include/clipper/core/nxmap_operator.h
  63. include/clipper/core/ramachandran.h
  64. include/clipper/core/resol_basisfn.h
  65. include/clipper/core/resol_fn.h
  66. include/clipper/core/resol_targetfn.h
  67. include/clipper/core/rotation.h
  68. include/clipper/core/spacegroup.h
  69. include/clipper/core/spacegroup_data.h
  70. include/clipper/core/symop.h
  71. include/clipper/core/test_core.h
  72. include/clipper/core/test_data.h
  73. include/clipper/core/xmap.h
  74. include/clipper/minimal-clipper-hkl.h
  75. include/clipper/minimal-clipper-map.h
  76. include/clipper/minimol/container_minimol.h
  77. include/clipper/minimol/minimol.h
  78. include/clipper/minimol/minimol_data.h
  79. include/clipper/minimol/minimol_io.h
  80. include/clipper/minimol/minimol_seq.h
  81. include/clipper/minimol/minimol_utils.h
  82. include/clipper/mmdb/clipper_mmdb.h
  83. include/clipper/phs/phs_io.h
  84. lib/libclipper-ccp4.so
  85. lib/libclipper-ccp4.so.2
  86. lib/libclipper-ccp4.so.2.0.1
  87. lib/libclipper-cif.so
  88. lib/libclipper-cif.so.2
  89. lib/libclipper-cif.so.2.0.1
  90. lib/libclipper-cns.so
  91. lib/libclipper-cns.so.2
  92. lib/libclipper-cns.so.2.0.1
  93. lib/libclipper-contrib.so
  94. lib/libclipper-contrib.so.2
  95. lib/libclipper-contrib.so.2.0.1
  96. lib/libclipper-core.so
  97. lib/libclipper-core.so.2
  98. lib/libclipper-core.so.2.0.1
  99. lib/libclipper-fortran.so
  100. lib/libclipper-fortran.so.2
  101. lib/libclipper-fortran.so.2.0.1
  102. lib/libclipper-minimol.so
  103. lib/libclipper-minimol.so.2
  104. lib/libclipper-minimol.so.2.0.1
  105. lib/libclipper-mmdb.so
  106. lib/libclipper-mmdb.so.2
  107. lib/libclipper-mmdb.so.2.0.1
  108. lib/libclipper-phs.so
  109. lib/libclipper-phs.so.2
  110. lib/libclipper-phs.so.2.0.1
  111. libdata/pkgconfig/clipper.pc
  112. @owner
  113. @group
  114. @mode
Collapse this list.
Dependency lines:
  • For RUN/BUILD depends:
    • clipper>0:science/clipper
  • For LIB depends:
    • libclipper-ccp4.so:science/clipper
    • libclipper-cif.so:science/clipper
    • libclipper-cns.so:science/clipper
    • libclipper-contrib.so:science/clipper
    • libclipper-core.so:science/clipper
    • libclipper-fortran.so:science/clipper
    • libclipper-minimol.so:science/clipper
    • libclipper-mmdb.so:science/clipper
    • libclipper-phs.so:science/clipper
To install the port:
cd /usr/ports/science/clipper/ && make install clean
To add the package, run one of these commands:
  • pkg install science/clipper
  • pkg install clipper
PKGNAME: clipper
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
clipper
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd642.1.20180802_32.1.20180802_3
FreeBSD:11:armv6--
FreeBSD:11:i3862.1.20180802_32.1.20180802_3
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd642.1.20180802_32.1.20180802_3
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3862.1.20180802_32.1.20180802_3
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-2.1.20180802_3
FreeBSD:13:aarch64--
FreeBSD:13:amd642.1.20180802_32.1.20180802_3
FreeBSD:13:armv6--
FreeBSD:13:armv7-2.1.20180802_3
FreeBSD:13:i3862.1.20180802_32.1.20180802_3
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc642.1.20180802_32.1.20180802_3
FreeBSD:14:aarch64--
FreeBSD:14:amd642.1.20180802_3-
FreeBSD:14:armv6--
FreeBSD:14:armv72.1.20180802_3-
FreeBSD:14:i3862.1.20180802_3-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc642.1.20180802_3-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gfortran10 : lang/gcc10
  2. gmake>=4.3 : devel/gmake
  3. as : devel/binutils
Runtime dependencies:
  1. gfortran10 : lang/gcc10
Library dependencies:
  1. libccp4c.so : science/libccp4
  2. libmmdb2.so : science/mmdb2
  3. libsfftw.so : math/fftw-float
This port is required by:
for Libraries

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. science/coot*
  2. Collapse this list of deleted ports.
* - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/
Collapse this list.

Number of commits found: 9

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  2.1.20180802_3
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  2.1.20180802_3
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  2.1.20180802_3
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
11 May 2019 20:30:19
Original commit files touched by this commit Revision:501304  2.1.20180802_2
pkubaj search for other commits by this committer
science/clipper: add USES=compiler:c++11-lang

This is needed to build science/coot.

Approved by:	mentors (implicit approval)
22 Apr 2019 13:16:34
Original commit files touched by this commit Revision:499638  2.1.20180802_2
gerald search for other commits by this committer
Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  2.1.20180802_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
27 Sep 2018 03:50:56
Original commit files touched by this commit Revision:480774  2.1.20180802
yuri search for other commits by this committer
science/clipper: Update 2.1.20180526 -> 2.1.20180802

Reported by:	portscout
29 Jul 2018 22:18:46
Original commit files touched by this commit Revision:475857  2.1.20180526_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
08 Jul 2018 01:27:11
Original commit files touched by this commit Revision:474150  2.1.20180526
yuri search for other commits by this committer
New port: science/clipper: Libraries for the organisation of crystallographic
data

Number of commits found: 9