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Port details
clipper Libraries for the organisation of crystallographic data
2.1.20180802_1 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 08 Jul 2018 01:30:02
License: LGPL3
The aim of the project is to produce a set of object-oriented libraries for the
organisation of crystallographic data and the performance of crystallographic
computation. The libraries are designed as a framework for new crystallographic
software, which will allow the full power of modern programming techniques to be
exploited by the developer. This will lead to greater functionality from simpler
code which will be easier to develop and debug.

WWW: http://www.ysbl.york.ac.uk/~cowtan/clipper/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (112 items)
  1. /usr/local/share/licenses/clipper-2.1.20180802_1/catalog.mk
  2. /usr/local/share/licenses/clipper-2.1.20180802_1/LICENSE
  3. /usr/local/share/licenses/clipper-2.1.20180802_1/LGPL3
  4. include/clipper/ccp4/ccp4_map_io.h
  5. include/clipper/ccp4/ccp4_mtz_io.h
  6. include/clipper/ccp4/ccp4_mtz_types.h
  7. include/clipper/ccp4/ccp4_utils.h
  8. include/clipper/cif/cif_data_io.h
  9. include/clipper/clipper-ccp4.h
  10. include/clipper/clipper-cctbx.h
  11. include/clipper/clipper-cif.h
  12. include/clipper/clipper-cns.h
  13. include/clipper/clipper-contrib.h
  14. include/clipper/clipper-minimol.h
  15. include/clipper/clipper-mmdb.h
  16. include/clipper/clipper-phs.h
  17. include/clipper/clipper.h
  18. include/clipper/cns/cns_hkl_io.h
  19. include/clipper/cns/cns_map_io.h
  20. include/clipper/contrib/convolution_search.h
  21. include/clipper/contrib/edcalc.h
  22. include/clipper/contrib/fffear.h
  23. include/clipper/contrib/function_object_bases.h
  24. include/clipper/contrib/mapfilter.h
  25. include/clipper/contrib/originmatch.h
  26. include/clipper/contrib/sfcalc.h
  27. include/clipper/contrib/sfcalc_obs.h
  28. include/clipper/contrib/sfscale.h
  29. include/clipper/contrib/sfweight.h
  30. include/clipper/contrib/skeleton.h
  31. include/clipper/contrib/test_contrib.h
  32. include/clipper/core/atomsf.h
  33. include/clipper/core/cell.h
  34. include/clipper/core/clipper_instance.h
  35. include/clipper/core/clipper_memory.h
  36. include/clipper/core/clipper_message.h
  37. include/clipper/core/clipper_precision.h
  38. include/clipper/core/clipper_stats.h
  39. include/clipper/core/clipper_sysdep.h
  40. include/clipper/core/clipper_test.h
  41. include/clipper/core/clipper_thread.h
  42. include/clipper/core/clipper_types.h
  43. include/clipper/core/clipper_util.h
  44. include/clipper/core/container.h
  45. include/clipper/core/container_hkl.h
  46. include/clipper/core/container_map.h
  47. include/clipper/core/container_types.h
  48. include/clipper/core/coords.h
  49. include/clipper/core/derivs.h
  50. include/clipper/core/fftmap.h
  51. include/clipper/core/fftmap_sparse.h
  52. include/clipper/core/hkl_compute.h
  53. include/clipper/core/hkl_data.h
  54. include/clipper/core/hkl_datatypes.h
  55. include/clipper/core/hkl_info.h
  56. include/clipper/core/hkl_lookup.h
  57. include/clipper/core/hkl_operators.h
  58. include/clipper/core/map_interp.h
  59. include/clipper/core/map_utils.h
  60. include/clipper/core/nxmap.h
  61. include/clipper/core/nxmap_operator.h
  62. include/clipper/core/ramachandran.h
  63. include/clipper/core/resol_basisfn.h
  64. include/clipper/core/resol_fn.h
  65. include/clipper/core/resol_targetfn.h
  66. include/clipper/core/rotation.h
  67. include/clipper/core/spacegroup.h
  68. include/clipper/core/spacegroup_data.h
  69. include/clipper/core/symop.h
  70. include/clipper/core/test_core.h
  71. include/clipper/core/test_data.h
  72. include/clipper/core/xmap.h
  73. include/clipper/minimal-clipper-hkl.h
  74. include/clipper/minimal-clipper-map.h
  75. include/clipper/minimol/container_minimol.h
  76. include/clipper/minimol/minimol.h
  77. include/clipper/minimol/minimol_data.h
  78. include/clipper/minimol/minimol_io.h
  79. include/clipper/minimol/minimol_seq.h
  80. include/clipper/minimol/minimol_utils.h
  81. include/clipper/mmdb/clipper_mmdb.h
  82. include/clipper/phs/phs_io.h
  83. lib/libclipper-ccp4.so
  84. lib/libclipper-ccp4.so.2
  85. lib/libclipper-ccp4.so.2.0.1
  86. lib/libclipper-cif.so
  87. lib/libclipper-cif.so.2
  88. lib/libclipper-cif.so.2.0.1
  89. lib/libclipper-cns.so
  90. lib/libclipper-cns.so.2
  91. lib/libclipper-cns.so.2.0.1
  92. lib/libclipper-contrib.so
  93. lib/libclipper-contrib.so.2
  94. lib/libclipper-contrib.so.2.0.1
  95. lib/libclipper-core.so
  96. lib/libclipper-core.so.2
  97. lib/libclipper-core.so.2.0.1
  98. lib/libclipper-fortran.so
  99. lib/libclipper-fortran.so.2
  100. lib/libclipper-fortran.so.2.0.1
  101. lib/libclipper-minimol.so
  102. lib/libclipper-minimol.so.2
  103. lib/libclipper-minimol.so.2.0.1
  104. lib/libclipper-mmdb.so
  105. lib/libclipper-mmdb.so.2
  106. lib/libclipper-mmdb.so.2.0.1
  107. lib/libclipper-phs.so
  108. lib/libclipper-phs.so.2
  109. lib/libclipper-phs.so.2.0.1
  110. libdata/pkgconfig/clipper.pc
  111. @postexec /usr/sbin/service ldconfig restart > /dev/null
  112. @postunexec /usr/sbin/service ldconfig restart > /dev/null
  113. Collapse this list.

To install the port: cd /usr/ports/science/clipper/ && make install clean
To add the package: pkg install clipper

PKGNAME: clipper

distinfo:

TIMESTAMP = 1538018135
SHA256 (clipper-2.1.20180802.tar.gz) = 7c7774f224b59458e0faa104d209da906c129523fa737e81eb3b99ec772b81e0
SIZE (clipper-2.1.20180802.tar.gz) = 4238748


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gfortran8 : lang/gcc8
  2. gmake : devel/gmake
  3. as : devel/binutils
Runtime dependencies:
  1. gfortran8 : lang/gcc8
Library dependencies:
  1. libccp4c.so : science/libccp4
  2. libmmdb2.so : science/mmdb2
  3. libsfftw.so : math/fftw-float

This port is required by:

for Libraries * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options
     No options to configure

USES:
fortran gmake libtool localbase:ldflags

Master Sites:
  1. https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/

Number of commits found: 4

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
12 Dec 2018 01:35:36
Original commit files touched by this commit  2.1.20180802_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
27 Sep 2018 03:50:56
Original commit files touched by this commit  2.1.20180802
Revision:480774
yuri search for other commits by this committer
science/clipper: Update 2.1.20180526 -> 2.1.20180802

Reported by:	portscout
29 Jul 2018 22:18:46
Original commit files touched by this commit  2.1.20180526_1
Revision:475857
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
08 Jul 2018 01:27:11
Original commit files touched by this commit  2.1.20180526
Revision:474150
yuri search for other commits by this committer
New port: science/clipper: Libraries for the organisation of crystallographic
data

Number of commits found: 4

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