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Port details
coot Crystallographic Object-Oriented Toolkit
0.8.9.1_2 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-08 04:45:42
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: LGPL3
Coot is for macromolecular model building, model completion and validation,
particularly suitable for protein modelling using X-ray data.

Coot displays maps and models and allows model manipulations such as
idealization, real space refinement, manual rotation/translation, rigid-body
fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots,
skeletonization, non-crystallographic symmetry and more.

WWW: https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (14472 items)
  1. @desktop-file-utils
  2. /usr/local/share/licenses/coot-0.8.9.1_2/catalog.mk
  3. /usr/local/share/licenses/coot-0.8.9.1_2/LICENSE
  4. /usr/local/share/licenses/coot-0.8.9.1_2/LGPL3
  5. bin/coot
  6. bin/coot-available-comp-id
  7. bin/coot-bfactan
  8. bin/coot-compare-dictionaries
  9. bin/coot-density-score-by-residue
  10. bin/coot-fix-nomenclature-errors
  11. bin/coot-make-shelx-restraints
  12. bin/coot-mini-rsr
  13. bin/dynarama
  14. bin/findligand
  15. bin/findwaters
  16. bin/lidia
  17. include/coot/analysis/bfkurt.hh
  18. include/coot/analysis/mogul-interface.hh
  19. include/coot/analysis/stats.hh
  20. include/coot/angles/AngleInfo.h
  21. include/coot/angles/ncube.h
  22. include/coot/angles/wrapped-ncube.h
  23. include/coot/build/CalphaBuild.hh
  24. include/coot/ccp4mg-utils/cartesian.h
  25. include/coot/ccp4mg-utils/geomutil.h
  26. include/coot/ccp4mg-utils/matrix.h
  27. include/coot/ccp4mg-utils/mgtree.h
  28. include/coot/ccp4mg-utils/ppmutil.h
  29. include/coot/ccp4mg-utils/quat.h
  30. include/coot/compat/coot-getopt.h
  31. include/coot/coords/Bond_lines.h
  32. include/coot/coords/Bond_lines_ext.h
  33. include/coot/coords/Cartesian.h
  34. include/coot/coords/coot-close.hh
  35. include/coot/coords/cos-sin.h
  36. include/coot/coords/mmdb-crystal.h
  37. include/coot/coords/mmdb-extras.h
  38. include/coot/coords/mmdb.h
  39. include/coot/coords/phenix-geo.hh
  40. include/coot/coords/ramachandran-container.hh
  41. include/coot/coords/utils.h
  42. include/coot/coot-utils/atom-overlaps.hh
  43. include/coot/coot-utils/bonded-pairs.hh
  44. include/coot/coot-utils/coot-coord-extras.hh
  45. include/coot/coot-utils/coot-coord-utils.hh
  46. include/coot/coot-utils/coot-density-stats.hh
  47. include/coot/coot-utils/coot-h-bonds.hh
  48. include/coot/coot-utils/coot-hole.hh
  49. include/coot/coot-utils/coot-least-squares.hh
  50. include/coot/coot-utils/coot-lsq-types.h
  51. include/coot/coot-utils/coot-map-heavy.hh
  52. include/coot/coot-utils/coot-map-utils.hh
  53. include/coot/coot-utils/coot-rama.hh
  54. include/coot/coot-utils/coot-shelx.hh
  55. include/coot/coot-utils/coot-trim.hh
  56. include/coot/coot-utils/elastic.hh
  57. include/coot/coot-utils/emma.hh
  58. include/coot/coot-utils/glyco-torsions.hh
  59. include/coot/coot-utils/helix-analysis.hh
  60. include/coot/coot-utils/lsq-improve.hh
  61. include/coot/coot-utils/peak-search.hh
  62. include/coot/coot-utils/plane-utils.hh
  63. include/coot/coot-utils/read-sm-cif.hh
  64. include/coot/coot-utils/reduce.hh
  65. include/coot/coot-utils/secondary-structure-headers.hh
  66. include/coot/coot-utils/tree.hh
  67. include/coot/coot-utils/xmap-stats.hh
  68. include/coot/crunch-model.hh
  69. include/coot/db-main/db-main.hh
  70. include/coot/db-main/db-strands.hh
  71. include/coot/density-contour/CIsoSurface.h
  72. include/coot/density-contour/Vectors.h
  73. include/coot/density-contour/density-contour-triangles.hh
  74. include/coot/geometry/chem_mods.hh
  75. include/coot/geometry/dict-mismatches.hh
  76. include/coot/geometry/dict-utils.hh
  77. include/coot/geometry/energy-lib.hh
  78. include/coot/geometry/hb-types.hh
  79. include/coot/geometry/lbg-graph.hh
  80. include/coot/geometry/main-chain.hh
  81. include/coot/geometry/match-results.hh
  82. include/coot/geometry/mol-utils-2.hh
  83. include/coot/geometry/protein-geometry.hh
  84. include/coot/geometry/read-sbase.hh
  85. include/coot/geometry/residue-and-atom-specs.hh
  86. include/coot/geometry/srs-interface.hh
  87. include/coot/high-res/coot-atom-graph.hh
  88. include/coot/high-res/coot-node-info.hh
  89. include/coot/high-res/high-res.hh
  90. include/coot/high-res/sequence-assignment.hh
  91. include/coot/ideal/extra-restraints.hh
  92. include/coot/ideal/lograma.h
  93. include/coot/ideal/model-bond-deltas.hh
  94. include/coot/ideal/parallel-planes.hh
  95. include/coot/ideal/pepflip.hh
  96. include/coot/ideal/regularize-minimol.hh
  97. include/coot/ideal/simple-restraint.hh
  98. include/coot/ideal/test-indexing.hh
  99. include/coot/ideal/torsion-bonds.hh
  100. include/coot/lbg/alerts.hh
  101. include/coot/lbg/graphics-c-interface-functions.hh
  102. include/coot/lbg/lbg-drag-and-drop.hh
  103. include/coot/lbg/lbg.hh
  104. include/coot/lbg/qed-interface.hh
  105. include/coot/lbg/solvent-exposure-difference.hh
  106. include/coot/lbg/topological-equivalence.hh
  107. include/coot/lbg/w-atom.hh
  108. include/coot/lbg/w-bond.hh
  109. include/coot/lbg/wmolecule.hh
  110. include/coot/lidia-core/bond-record-container-t.hh
  111. include/coot/lidia-core/bond-table-record-t.hh
  112. include/coot/lidia-core/chemical-feature-clusters.hh
  113. include/coot/lidia-core/cod-atom-type-t.hh
  114. include/coot/lidia-core/cod-atom-types.hh
  115. include/coot/lidia-core/cod-types.hh
  116. include/coot/lidia-core/lbg-molfile.hh
  117. include/coot/lidia-core/lbg-shared.hh
  118. include/coot/lidia-core/lig-build.hh
  119. include/coot/lidia-core/neighbour-sorter.hh
  120. include/coot/lidia-core/primes.hh
  121. include/coot/lidia-core/rdkit-interface.hh
  122. include/coot/lidia-core/third-neighbour-info-t.hh
  123. include/coot/lidia-core/use-rdkit.hh
  124. include/coot/ligand/backrub-rotamer.hh
  125. include/coot/ligand/base-pairing.hh
  126. include/coot/ligand/chi-angles.hh
  127. include/coot/ligand/dipole.hh
  128. include/coot/ligand/dunbrack.hh
  129. include/coot/ligand/fast-ss-search.hh
  130. include/coot/ligand/helix-placement.hh
  131. include/coot/ligand/ideal-rna.hh
  132. include/coot/ligand/ligand-score-card.hh
  133. include/coot/ligand/ligand.hh
  134. include/coot/ligand/ligands-db.hh
  135. include/coot/ligand/map-point-cluster.hh
  136. include/coot/ligand/monomer-utils.hh
  137. include/coot/ligand/multi-peptide.hh
  138. include/coot/ligand/primitive-chi-angles.hh
  139. include/coot/ligand/residue_by_phi_psi.hh
  140. include/coot/ligand/richardson-rotamer.hh
  141. include/coot/ligand/rigid-body.hh
  142. include/coot/ligand/rotamer.hh
  143. include/coot/ligand/scored-coord.hh
  144. include/coot/ligand/scored-molecule.hh
  145. include/coot/ligand/torsion-general.hh
  146. include/coot/ligand/trace.hh
  147. include/coot/ligand/wligand.hh
  148. include/coot/mini-mol/atom-quads.hh
  149. include/coot/mini-mol/mini-mol-utils.hh
  150. include/coot/mini-mol/mini-mol.hh
  151. include/coot/pli/flev-annotations.hh
  152. include/coot/pli/pi-stacking.hh
  153. include/coot/pli/protein-ligand-interactions.hh
  154. include/coot/pli/specs.hh
  155. include/coot/protein_db/protein_db.h
  156. include/coot/protein_db/protein_db_utils.h
  157. include/coot/protein_db/rna_db.h
  158. include/coot/skeleton/BuildCas.h
  159. include/coot/skeleton/dm-utils.h
  160. include/coot/skeleton/graphical_skel.h
  161. include/coot/tw/coot-tw.hh
  162. include/coot/utils/coot-fasta.hh
  163. include/coot/utils/coot-utils.hh
  164. include/coot/utils/ctpl_stl.h
  165. include/coot/utils/dodec.hh
  166. include/coot/utils/pir-alignment.hh
  167. include/coot/utils/win-compat.hh
  168. lib/libccp4mg-utils.so
  169. lib/libccp4mg-utils.so.0
  170. lib/libccp4mg-utils.so.0.0.0
  171. lib/libcoot-AngleInfo.so
  172. lib/libcoot-AngleInfo.so.0
  173. lib/libcoot-AngleInfo.so.0.0.0
  174. lib/libcoot-analysis.so
  175. lib/libcoot-analysis.so.0
  176. lib/libcoot-analysis.so.0.0.0
  177. lib/libcoot-cabuild.so
  178. lib/libcoot-cabuild.so.0
  179. lib/libcoot-cabuild.so.0.0.0
  180. lib/libcoot-compat.so
  181. lib/libcoot-compat.so.0
  182. lib/libcoot-compat.so.0.0.0
  183. lib/libcoot-coord-extras.so
  184. lib/libcoot-coord-extras.so.0
  185. lib/libcoot-coord-extras.so.0.0.0
  186. lib/libcoot-coord-utils.so
  187. lib/libcoot-coord-utils.so.0
  188. lib/libcoot-coord-utils.so.0.0.0
  189. lib/libcoot-coords.so
  190. lib/libcoot-coords.so.0
  191. lib/libcoot-coords.so.0.0.0
  192. lib/libcoot-db-main.so
  193. lib/libcoot-db-main.so.0
  194. lib/libcoot-db-main.so.0.0.0
  195. lib/libcoot-electrostatics.so
  196. lib/libcoot-electrostatics.so.0
  197. lib/libcoot-electrostatics.so.0.0.0
  198. lib/libcoot-geometry.so
  199. lib/libcoot-geometry.so.0
  200. lib/libcoot-geometry.so.0.0.0
  201. lib/libcoot-goograph.so
  202. lib/libcoot-goograph.so.0
  203. lib/libcoot-goograph.so.0.0.0
  204. lib/libcoot-gtkgraph.so
  205. lib/libcoot-gtkgraph.so.0
  206. lib/libcoot-gtkgraph.so.0.0.0
  207. lib/libcoot-high-res.so
  208. lib/libcoot-high-res.so.0
  209. lib/libcoot-high-res.so.0.0.0
  210. lib/libcoot-ideal.so
  211. lib/libcoot-ideal.so.0
  212. lib/libcoot-ideal.so.0.0.0
  213. lib/libcoot-isosurface.so
  214. lib/libcoot-isosurface.so.0
  215. lib/libcoot-isosurface.so.0.0.0
  216. lib/libcoot-lidia-core.so
  217. lib/libcoot-lidia-core.so.0
  218. lib/libcoot-lidia-core.so.0.0.0
  219. lib/libcoot-lidia.so
  220. lib/libcoot-lidia.so.0
  221. lib/libcoot-lidia.so.0.0.0
  222. lib/libcoot-ligand.so
  223. lib/libcoot-ligand.so.0
  224. lib/libcoot-ligand.so.0.0.0
  225. lib/libcoot-map-heavy.so
  226. lib/libcoot-map-heavy.so.0
  227. lib/libcoot-map-heavy.so.0.0.0
  228. lib/libcoot-map-utils.so
  229. lib/libcoot-map-utils.so.0
  230. lib/libcoot-map-utils.so.0.0.0
  231. lib/libcoot-mini-mol.so
  232. lib/libcoot-mini-mol.so.0
  233. lib/libcoot-mini-mol.so.0.0.0
  234. lib/libcoot-pli.so
  235. lib/libcoot-pli.so.0
  236. lib/libcoot-pli.so.0.0.0
  237. lib/libcoot-protein-db.so
  238. lib/libcoot-protein-db.so.0
  239. lib/libcoot-protein-db.so.0.0.0
  240. lib/libcoot-shelx.so
  241. lib/libcoot-shelx.so.0
  242. lib/libcoot-shelx.so.0.0.0
  243. lib/libcoot-skeleton.so
  244. lib/libcoot-skeleton.so.0
  245. lib/libcoot-skeleton.so.0.0.0
  246. lib/libcoot-surface.so
  247. lib/libcoot-surface.so.0
  248. lib/libcoot-surface.so.0.0.0
  249. lib/libcoot-tw.so
  250. lib/libcoot-tw.so.0
  251. lib/libcoot-tw.so.0.0.0
  252. lib/libcoot-utils.so
  253. lib/libcoot-utils.so.0
  254. lib/libcoot-utils.so.0.0.0
  255. lib/libcootaneer.so
  256. lib/libcootaneer.so.0
  257. lib/libcootaneer.so.0.0.0
  258. lib/libcootilus.so
  259. lib/libcootilus.so.0
  260. lib/libcootilus.so.0.0.0
  261. lib/python2.7/site-packages/coot/3d_generator_import.py
  262. lib/python2.7/site-packages/coot/3d_generator_import.pyc
  263. lib/python2.7/site-packages/coot/3d_generator_import.pyo
  264. lib/python2.7/site-packages/coot/acedrg_link.py
  265. lib/python2.7/site-packages/coot/acedrg_link.pyc
  266. lib/python2.7/site-packages/coot/acedrg_link.pyo
  267. lib/python2.7/site-packages/coot/americanisms.py
  268. lib/python2.7/site-packages/coot/americanisms.pyc
  269. lib/python2.7/site-packages/coot/americanisms.pyo
  270. lib/python2.7/site-packages/coot/background_demo.py
  271. lib/python2.7/site-packages/coot/background_demo.pyc
  272. lib/python2.7/site-packages/coot/background_demo.pyo
  273. lib/python2.7/site-packages/coot/bones_reader.py
  274. lib/python2.7/site-packages/coot/bones_reader.pyc
  275. lib/python2.7/site-packages/coot/bones_reader.pyo
  276. lib/python2.7/site-packages/coot/brute_lsqman.py
  277. lib/python2.7/site-packages/coot/brute_lsqman.pyc
  278. lib/python2.7/site-packages/coot/brute_lsqman.pyo
  279. lib/python2.7/site-packages/coot/check_for_updates.py
  280. lib/python2.7/site-packages/coot/check_for_updates.pyc
  281. lib/python2.7/site-packages/coot/check_for_updates.pyo
  282. lib/python2.7/site-packages/coot/chemical_feature_clusters.py
  283. lib/python2.7/site-packages/coot/chemical_feature_clusters.pyc
  284. lib/python2.7/site-packages/coot/chemical_feature_clusters.pyo
  285. lib/python2.7/site-packages/coot/cho_restraints_from_models.py
  286. lib/python2.7/site-packages/coot/cho_restraints_from_models.pyc
  287. lib/python2.7/site-packages/coot/cho_restraints_from_models.pyo
  288. lib/python2.7/site-packages/coot/clear_backup.py
  289. lib/python2.7/site-packages/coot/clear_backup.pyc
  290. lib/python2.7/site-packages/coot/clear_backup.pyo
  291. lib/python2.7/site-packages/coot/cns2coot.py
  292. lib/python2.7/site-packages/coot/cns2coot.pyc
  293. lib/python2.7/site-packages/coot/cns2coot.pyo
  294. lib/python2.7/site-packages/coot/contact_score_isolated_ligand.py
  295. lib/python2.7/site-packages/coot/contact_score_isolated_ligand.pyc
  296. lib/python2.7/site-packages/coot/contact_score_isolated_ligand.pyo
  297. lib/python2.7/site-packages/coot/coot_gui.py
  298. lib/python2.7/site-packages/coot/coot_gui.pyc
  299. lib/python2.7/site-packages/coot/coot_gui.pyo
  300. lib/python2.7/site-packages/coot/coot_load_modules.py
  301. lib/python2.7/site-packages/coot/coot_load_modules.pyc
  302. lib/python2.7/site-packages/coot/coot_load_modules.pyo
  303. lib/python2.7/site-packages/coot/coot_lsq.py
  304. lib/python2.7/site-packages/coot/coot_lsq.pyc
  305. lib/python2.7/site-packages/coot/coot_lsq.pyo
  306. lib/python2.7/site-packages/coot/coot_toolbuttons.py
  307. lib/python2.7/site-packages/coot/coot_toolbuttons.pyc
  308. lib/python2.7/site-packages/coot/coot_toolbuttons.pyo
  309. lib/python2.7/site-packages/coot/coot_utils.py
  310. lib/python2.7/site-packages/coot/coot_utils.pyc
  311. lib/python2.7/site-packages/coot/coot_utils.pyo
  312. lib/python2.7/site-packages/coot/create_server.py
  313. lib/python2.7/site-packages/coot/create_server.pyc
  314. lib/python2.7/site-packages/coot/create_server.pyo
  315. lib/python2.7/site-packages/coot/dictionary_generators.py
  316. lib/python2.7/site-packages/coot/dictionary_generators.pyc
  317. lib/python2.7/site-packages/coot/dictionary_generators.pyo
  318. lib/python2.7/site-packages/coot/enhanced_ligand.py
  319. lib/python2.7/site-packages/coot/enhanced_ligand.pyc
  320. lib/python2.7/site-packages/coot/enhanced_ligand.pyo
  321. lib/python2.7/site-packages/coot/extensions.py
  322. lib/python2.7/site-packages/coot/extensions.pyc
  323. lib/python2.7/site-packages/coot/extensions.pyo
  324. lib/python2.7/site-packages/coot/filter.py
  325. lib/python2.7/site-packages/coot/filter.pyc
  326. lib/python2.7/site-packages/coot/filter.pyo
  327. lib/python2.7/site-packages/coot/fitting.py
  328. lib/python2.7/site-packages/coot/fitting.pyc
  329. lib/python2.7/site-packages/coot/fitting.pyo
  330. lib/python2.7/site-packages/coot/gap.py
  331. lib/python2.7/site-packages/coot/gap.pyc
  332. lib/python2.7/site-packages/coot/gap.pyo
  333. lib/python2.7/site-packages/coot/generic_objects.py
  334. lib/python2.7/site-packages/coot/generic_objects.pyc
  335. lib/python2.7/site-packages/coot/generic_objects.pyo
  336. lib/python2.7/site-packages/coot/get_ebi.py
  337. lib/python2.7/site-packages/coot/get_ebi.pyc
  338. lib/python2.7/site-packages/coot/get_ebi.pyo
  339. lib/python2.7/site-packages/coot/get_recent_pdbe.py
  340. lib/python2.7/site-packages/coot/get_recent_pdbe.pyc
  341. lib/python2.7/site-packages/coot/get_recent_pdbe.pyo
  342. lib/python2.7/site-packages/coot/group_settings.py
  343. lib/python2.7/site-packages/coot/group_settings.pyc
  344. lib/python2.7/site-packages/coot/group_settings.pyo
  345. lib/python2.7/site-packages/coot/gui_add_linked_cho.py
  346. lib/python2.7/site-packages/coot/gui_add_linked_cho.pyc
  347. lib/python2.7/site-packages/coot/gui_add_linked_cho.pyo
  348. lib/python2.7/site-packages/coot/gui_contact_score_isolated_ligand.py
  349. lib/python2.7/site-packages/coot/gui_contact_score_isolated_ligand.pyc
  350. lib/python2.7/site-packages/coot/gui_contact_score_isolated_ligand.pyo
  351. lib/python2.7/site-packages/coot/gui_hole.py
  352. lib/python2.7/site-packages/coot/gui_hole.pyc
  353. lib/python2.7/site-packages/coot/gui_hole.pyo
  354. lib/python2.7/site-packages/coot/gui_ligand_sliders.py
  355. lib/python2.7/site-packages/coot/gui_ligand_sliders.pyc
  356. lib/python2.7/site-packages/coot/gui_ligand_sliders.pyo
  357. lib/python2.7/site-packages/coot/gui_prosmart.py
  358. lib/python2.7/site-packages/coot/gui_prosmart.pyc
  359. lib/python2.7/site-packages/coot/gui_prosmart.pyo
  360. lib/python2.7/site-packages/coot/hello.py
  361. lib/python2.7/site-packages/coot/hello.pyc
  362. lib/python2.7/site-packages/coot/hello.pyo
  363. lib/python2.7/site-packages/coot/interactive_nudge_residues.py
  364. lib/python2.7/site-packages/coot/interactive_nudge_residues.pyc
  365. lib/python2.7/site-packages/coot/interactive_nudge_residues.pyo
  366. lib/python2.7/site-packages/coot/jligand.py
  367. lib/python2.7/site-packages/coot/jligand.pyc
  368. lib/python2.7/site-packages/coot/jligand.pyo
  369. lib/python2.7/site-packages/coot/jligand_gui.py
  370. lib/python2.7/site-packages/coot/jligand_gui.pyc
  371. lib/python2.7/site-packages/coot/jligand_gui.pyo
  372. lib/python2.7/site-packages/coot/libcheck.py
  373. lib/python2.7/site-packages/coot/libcheck.pyc
  374. lib/python2.7/site-packages/coot/libcheck.pyo
  375. lib/python2.7/site-packages/coot/ligand_check.py
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  9380. share/coot/lib/data/monomers/m/M37.cif
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  14242. share/coot/pixmaps/mutate-auto-fit.svg
  14243. share/coot/pixmaps/mutate.png
  14244. share/coot/pixmaps/mutate.svg
  14245. share/coot/pixmaps/panel-screenshot.png
  14246. share/coot/pixmaps/peptide-omega.png
  14247. share/coot/pixmaps/peptide-omega.svg
  14248. share/coot/pixmaps/phenixed.svg
  14249. share/coot/pixmaps/pink-pointer.png
  14250. share/coot/pixmaps/pink-pointer.svg
  14251. share/coot/pixmaps/plane-distances.png
  14252. share/coot/pixmaps/plane-distances.svg
  14253. share/coot/pixmaps/pointer-distances.png
  14254. share/coot/pixmaps/pointer-distances.svg
  14255. share/coot/pixmaps/probe-clash.svg
  14256. share/coot/pixmaps/radacina_handcuffs-small.svg
  14257. share/coot/pixmaps/rama_all.png
  14258. share/coot/pixmaps/rama_gly.png
  14259. share/coot/pixmaps/rama_non_gly_pro.png
  14260. share/coot/pixmaps/rama_pro.png
  14261. share/coot/pixmaps/ramachandran.png
  14262. share/coot/pixmaps/refine-1.png
  14263. share/coot/pixmaps/refine-1.svg
  14264. share/coot/pixmaps/refine.png
  14265. share/coot/pixmaps/regularize-1.png
  14266. share/coot/pixmaps/regularize-1.svg
  14267. share/coot/pixmaps/regularize.png
  14268. share/coot/pixmaps/renumber-residues.svg
  14269. share/coot/pixmaps/reset-view-32.png
  14270. share/coot/pixmaps/reset-view-32.svg
  14271. share/coot/pixmaps/reset-view.png
  14272. share/coot/pixmaps/reset-view.svg
  14273. share/coot/pixmaps/residue-info.png
  14274. share/coot/pixmaps/residue-info.svg
  14275. share/coot/pixmaps/rigid-body.png
  14276. share/coot/pixmaps/rigid-body.svg
  14277. share/coot/pixmaps/rotamers.png
  14278. share/coot/pixmaps/rotamers.svg
  14279. share/coot/pixmaps/rrz.png
  14280. share/coot/pixmaps/rrz.svg
  14281. share/coot/pixmaps/rtz.png
  14282. share/coot/pixmaps/rtz.svg
  14283. share/coot/pixmaps/rygle-red-cross-64.png
  14284. share/coot/pixmaps/scroll-wheel.svg
  14285. share/coot/pixmaps/secondary-structure.svg
  14286. share/coot/pixmaps/sequence-view.png
  14287. share/coot/pixmaps/sequence-view.svg
  14288. share/coot/pixmaps/side-chain-180.png
  14289. share/coot/pixmaps/side-chain-180.svg
  14290. share/coot/pixmaps/single.svg
  14291. share/coot/pixmaps/smiles.png
  14292. share/coot/pixmaps/smiles.svg
  14293. share/coot/pixmaps/sp3.svg
  14294. share/coot/pixmaps/spin-view.png
  14295. share/coot/pixmaps/spin-view.svg
  14296. share/coot/pixmaps/stereo-out.svg
  14297. share/coot/pixmaps/stereo-view.svg
  14298. share/coot/pixmaps/stock-zoom-follow-window-12.png
  14299. share/coot/pixmaps/stock-zoom-follow-window-12.svg
  14300. share/coot/pixmaps/stop.svg
  14301. share/coot/pixmaps/temperature.png
  14302. share/coot/pixmaps/temperature.svg
  14303. share/coot/pixmaps/torsion-general.png
  14304. share/coot/pixmaps/torsion-general.svg
  14305. share/coot/pixmaps/triple.svg
  14306. share/coot/pixmaps/undo-1.png
  14307. share/coot/pixmaps/undo-1.svg
  14308. share/coot/pixmaps/unknown-blob.png
  14309. share/coot/pixmaps/unknown-blob.svg
  14310. share/coot/pixmaps/water-diff-map.svg
  14311. share/coot/pixmaps/water-drop.svg
  14312. share/coot/protein_db/protein.db
  14313. share/coot/pyranose-pyranose-via-ALPHA1-2.pdb
  14314. share/coot/pyranose-pyranose-via-ALPHA1-3.pdb
  14315. share/coot/pyranose-pyranose-via-ALPHA1-6.pdb
  14316. share/coot/pyranose-pyranose-via-BETA1-4.pdb
  14317. share/coot/rama-data/rota500-arg.data
  14318. share/coot/rama-data/rota500-asn.data
  14319. share/coot/rama-data/rota500-asp.data
  14320. share/coot/rama-data/rota500-cys.data
  14321. share/coot/rama-data/rota500-gln.data
  14322. share/coot/rama-data/rota500-glu.data
  14323. share/coot/rama-data/rota500-his.data
  14324. share/coot/rama-data/rota500-ile.data
  14325. share/coot/rama-data/rota500-leu.data
  14326. share/coot/rama-data/rota500-lys.data
  14327. share/coot/rama-data/rota500-met.data
  14328. share/coot/rama-data/rota500-phetyr.data
  14329. share/coot/rama-data/rota500-pro.data
  14330. share/coot/rama-data/rota500-ser.data
  14331. share/coot/rama-data/rota500-thr.data
  14332. share/coot/rama-data/rota500-trp.data
  14333. share/coot/rama-data/rota500-val.data
  14334. share/coot/reference-structures/1c75.pdb
  14335. share/coot/reference-structures/1c7k.pdb
  14336. share/coot/reference-structures/1ds1.pdb
  14337. share/coot/reference-structures/1dy5.pdb
  14338. share/coot/reference-structures/1e29.pdb
  14339. share/coot/reference-structures/1e4m.pdb
  14340. share/coot/reference-structures/1e9g.pdb
  14341. share/coot/reference-structures/1eb6.pdb
  14342. share/coot/reference-structures/1ejg.pdb
  14343. share/coot/reference-structures/1es9.pdb
  14344. share/coot/reference-structures/1et1.pdb
  14345. share/coot/reference-structures/1euw.pdb
  14346. share/coot/reference-structures/1f4p.pdb
  14347. share/coot/reference-structures/1f86.pdb
  14348. share/coot/reference-structures/1f94.pdb
  14349. share/coot/reference-structures/1f9v.pdb
  14350. share/coot/reference-structures/1fn8.pdb
  14351. share/coot/reference-structures/1fsg.pdb
  14352. share/coot/reference-structures/1fye.pdb
  14353. share/coot/reference-structures/1g2b.pdb
  14354. share/coot/reference-structures/1g2y.pdb
  14355. share/coot/reference-structures/1g4i.pdb
  14356. share/coot/reference-structures/1g61.pdb
  14357. share/coot/reference-structures/1g66.pdb
  14358. share/coot/reference-structures/1g6x.pdb
  14359. share/coot/reference-structures/1g7a.pdb
  14360. share/coot/reference-structures/1ga6.pdb
  14361. share/coot/reference-structures/1gk9.pdb
  14362. share/coot/reference-structures/1gmx.pdb
  14363. share/coot/reference-structures/1h4x.pdb
  14364. share/coot/reference-structures/1h97.pdb
  14365. share/coot/reference-structures/1hbn.pdb
  14366. share/coot/reference-structures/1hdh.pdb
  14367. share/coot/reference-structures/1hdo.pdb
  14368. share/coot/reference-structures/1heu.pdb
  14369. share/coot/reference-structures/1hg7.pdb
  14370. share/coot/reference-structures/1hvb.pdb
  14371. share/coot/reference-structures/1hyo.pdb
  14372. share/coot/reference-structures/1i0d.pdb
  14373. share/coot/reference-structures/1i0v.pdb
  14374. share/coot/reference-structures/1i12.pdb
  14375. share/coot/reference-structures/1i27.pdb
  14376. share/coot/reference-structures/1i2t.pdb
  14377. share/coot/reference-structures/1i40.pdb
  14378. share/coot/reference-structures/1i4u.pdb
  14379. share/coot/reference-structures/1i8o.pdb
  14380. share/coot/reference-structures/1iqz.pdb
  14381. share/coot/reference-structures/1ird.pdb
  14382. share/coot/reference-structures/1j98.pdb
  14383. share/coot/reference-structures/1j9b.pdb
  14384. share/coot/reference-structures/1jbe.pdb
  14385. share/coot/reference-structures/1jcl.pdb
  14386. share/coot/reference-structures/1jf8.pdb
  14387. share/coot/reference-structures/1jfb.pdb
  14388. share/coot/reference-structures/1jg1.pdb
  14389. share/coot/reference-structures/1jk3.pdb
  14390. share/coot/reference-structures/1jl1.pdb
  14391. share/coot/reference-structures/1k7c.pdb
  14392. share/coot/reference-structures/1ka1.pdb
  14393. share/coot/reference-structures/1koi.pdb
  14394. share/coot/reference-structures/1kth.pdb
  14395. share/coot/scheme/0-auto-rot.scm
  14396. share/coot/scheme/3d-generator-import.scm
  14397. share/coot/scheme/acedrg-link.scm
  14398. share/coot/scheme/americanisms.scm
  14399. share/coot/scheme/background-demo.scm
  14400. share/coot/scheme/bit.scm
  14401. share/coot/scheme/bones-reader.scm
  14402. share/coot/scheme/brute-lsqman.scm
  14403. share/coot/scheme/check-for-updates.scm
  14404. share/coot/scheme/cho-restraints-from-models.scm
  14405. share/coot/scheme/clear-backup.scm
  14406. share/coot/scheme/cns2coot.scm
  14407. share/coot/scheme/contact-score-isolated-ligand.scm
  14408. share/coot/scheme/coot-crash-catcher.scm
  14409. share/coot/scheme/coot-gui.scm
  14410. share/coot/scheme/coot-lsq.scm
  14411. share/coot/scheme/coot-utils.scm
  14412. share/coot/scheme/coot.scm
  14413. share/coot/scheme/create-server.scsh
  14414. share/coot/scheme/demo-script.scm
  14415. share/coot/scheme/dictionary-generators.scm
  14416. share/coot/scheme/enhanced-ligand.scm
  14417. share/coot/scheme/extensions.scm
  14418. share/coot/scheme/extra-top-level.scm
  14419. share/coot/scheme/fascinating-things.scm
  14420. share/coot/scheme/file-utils.scm
  14421. share/coot/scheme/filter.scm
  14422. share/coot/scheme/fitting.scm
  14423. share/coot/scheme/gap.scm
  14424. share/coot/scheme/generic-objects.scm
  14425. share/coot/scheme/get-ebi.save.scm
  14426. share/coot/scheme/get-ebi.scm
  14427. share/coot/scheme/get-recent-pdbe.scm
  14428. share/coot/scheme/group-settings.scm
  14429. share/coot/scheme/gtkin.scm
  14430. share/coot/scheme/gui-add-linked-cho.scm
  14431. share/coot/scheme/gui-hole.scm
  14432. share/coot/scheme/gui-ligand-sliders.scm
  14433. share/coot/scheme/gui-prosmart.scm
  14434. share/coot/scheme/hello.scm
  14435. share/coot/scheme/interactive-nudge-residues.scm
  14436. share/coot/scheme/jligand-gui.scm
  14437. share/coot/scheme/jligand.scm
  14438. share/coot/scheme/json-reader.scm
  14439. share/coot/scheme/junk.scm
  14440. share/coot/scheme/libcheck.scm
  14441. share/coot/scheme/ligand-check.scm
  14442. share/coot/scheme/local-code.scm
  14443. share/coot/scheme/matrices.scm
  14444. share/coot/scheme/mutate.scm
  14445. share/coot/scheme/my-readline.scm
  14446. share/coot/scheme/ncs.scm
  14447. share/coot/scheme/parse-pisa-xml.scm
  14448. share/coot/scheme/povray.scm
  14449. share/coot/scheme/raster3d.scm
  14450. share/coot/scheme/redefine-functions.scm
  14451. share/coot/scheme/refmac.scm
  14452. share/coot/scheme/remote-control.scm
  14453. share/coot/scheme/run-mogul.scm
  14454. share/coot/scheme/shelx-extensions.scm
  14455. share/coot/scheme/shelx.scm
  14456. share/coot/scheme/simple.scm
  14457. share/coot/scheme/snarf-coot-docs.scm
  14458. share/coot/scheme/template-key-bindings.scm
  14459. share/coot/scheme/tips-gui.scm
  14460. share/coot/scheme/tips.scm
  14461. share/coot/scheme/trivial.scm
  14462. share/coot/scheme/user-define-restraints.scm
  14463. share/coot/standard-residues.pdb
  14464. share/coot/syminfo.lib
  14465. share/coot/theor-helix-70.pdb
  14466. share/icons/hicolor/256x256/apps/coot.png
  14467. share/icons/hicolor/48x48/apps/coot.png
  14468. share/icons/hicolor/64x64/apps/coot.png
  14469. share/icons/hicolor/96x96/apps/coot.png
  14470. share/icons/hicolor/scalable/apps/coot.svg
  14471. @postexec /usr/sbin/service ldconfig restart > /dev/null
  14472. @postunexec /usr/sbin/service ldconfig restart > /dev/null
  14473. Collapse this list.

Dependency line: coot>0:science/coot


To install the port: cd /usr/ports/science/coot/ && make install clean
To add the package: pkg install coot

PKGNAME: coot

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1531013796
SHA256 (coot/coot-0.8.9.1.tar.gz) = 51b6faef11177a8ab682fbe28448f935ae1252ad53b4efa31339ff658a63ff94
SIZE (coot/coot-0.8.9.1.tar.gz) = 19360553
SHA256 (coot/refmac-monomer-library.tar.gz) = 03562eec612103a48bd114cfe0d171943e88f94b84610d16d542cda138e5f36b
SIZE (coot/refmac-monomer-library.tar.gz) = 37439851
SHA256 (coot/reference-structures.tar.gz) = 44db38506f0f90c097d4855ad81a82a36b49cd1e3ffe7d6ee4728b15109e281a
SIZE (coot/reference-structures.tar.gz) = 6728787


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. update-desktop-database : devel/desktop-file-utils
  2. gfortran8 : lang/gcc8
  3. gmake : devel/gmake
  4. pkgconf>=1.3.0_1 : devel/pkgconf
  5. python2.7 : lang/python27
  6. gtk-update-icon-cache : graphics/gtk-update-icon-cache
  7. as : devel/binutils
  8. xorgproto>=0 : x11/xorgproto
  9. xorgproto>=0 : x11/xorgproto
  10. ice.pc : x11/libICE
  11. sm.pc : x11/libSM
  12. x11.pc : x11/libX11
  13. xmu.pc : x11-toolkits/libXmu
  14. xt.pc : x11-toolkits/libXt
Runtime dependencies:
  1. bash : shells/bash
  2. update-desktop-database : devel/desktop-file-utils
  3. gfortran8 : lang/gcc8
  4. python2.7 : lang/python27
  5. gtk-update-icon-cache : graphics/gtk-update-icon-cache
  6. ice.pc : x11/libICE
  7. sm.pc : x11/libSM
  8. x11.pc : x11/libX11
  9. xmu.pc : x11-toolkits/libXmu
  10. xt.pc : x11-toolkits/libXt
Library dependencies:
  1. libccp4c.so : science/libccp4
  2. libclipper-core.so : science/clipper
  3. libcurl.so : ftp/curl
  4. libfontconfig.so : x11-fonts/fontconfig
  5. libfreetype.so : print/freetype2
  6. libgtkglext-x11-1.0.so : x11-toolkits/gtkglext
  7. libgsl.so : math/gsl
  8. libmmdb2.so : science/mmdb2
  9. libpng16.so : graphics/png
  10. libsfftw.so : math/fftw-float
  11. libssm.so : science/libssm
  12. libintl.so : devel/gettext-runtime
  13. libsqlite3.so : databases/sqlite3
  14. libatk-1.0.so : accessibility/atk
  15. libcairo.so : graphics/cairo
  16. libgdk_pixbuf-2.0.so : graphics/gdk-pixbuf2
  17. libglib-2.0.so : devel/glib20
  18. libintl.so : devel/gettext-runtime
  19. libgtk-x11-2.0.so : x11-toolkits/gtk20
  20. libart_lgpl_2.so : graphics/libart_lgpl
  21. libglade-2.0.so : devel/libglade2
  22. libgnomecanvas-2.so : graphics/libgnomecanvas
  23. libxml2.so : textproc/libxml2
  24. libpango-1.0.so : x11-toolkits/pango
  25. libpangox-1.0.so : x11-toolkits/pangox-compat
  26. libGL.so : graphics/mesa-libs
  27. libGLU.so : graphics/libGLU
  28. libglut.so : graphics/freeglut
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
desktop-file-utils fortran gettext-runtime gmake libtool localbase:ldflags pkgconfig python:2.7 shebangfix sqlite gnome gl

Master Sites:
  1. https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/releases/

Number of commits found: 4

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
12 Dec 2018 01:35:36
Original commit files touched by this commit  0.8.9.1_2
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
01 Oct 2018 09:36:38
Original commit files touched by this commit  0.8.9.1_1
Revision:481020
antoine search for other commits by this committer
Cleanup plists
29 Jul 2018 22:18:46
Original commit files touched by this commit  0.8.9.1_1
Revision:475857
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
08 Jul 2018 04:45:25
Original commit files touched by this commit  0.8.9.1
Revision:474154
yuri search for other commits by this committer
New port: science/coot: Crystallographic Object-Oriented Toolkit

Number of commits found: 4

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