CCP4 is a world-leading, integrated software suite for macromolecular
structure determination using X-ray crystallography and other biophysical
techniques. It provides a comprehensive collection of programs covering
all stages of the process, from data processing and phasing (e.g., Crank)
to molecular replacement (e.g., Beast, AMPLE), model building (e.g.,
Buccaneer), refinement (e.g., REFMAC), and validation.
The suite features automated structure solution pipelines and modern
graphical user interfaces like CCP4i2. As a community-based resource,
CCP4 supports a wide research community and plays a key role in the
education and training of scientists in experimental structural biology.
Its modular design and Coordinate Library offer flexibility and extensive
functionality for structural biologists.
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
science/libccp4: Unbreak build with GCC 10
fortran/pack_f.f:109:28:
45 | call pack_wordimage_f(data, x, y, filnarray)
| 2
......
109 | call pack_wordimage_f(data, x, y, filnarray)
| 1
Error: Type mismatch between actual argument at (1) and actual argument at (2)
(INTEGER(4)/INTEGER(2)).
fortran/pack_f.f:141:30:
77 | call v2pack_wordimage_f(data, x, y, filnarray)
| 2
......
141 | call v2pack_wordimage_f(data, x, y, filnarray)
| 1
Error: Type mismatch between actual argument at (1) and actual argument at (2)
(INTEGER(4)/INTEGER(2)).
http://package18.nyi.freebsd.org/data/121amd64-default-PR244494/2020-06-10_18h04m44s/logs/errors/libccp4-6.5.1_4.log
PR: 246700
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.
Suggested by: tijl
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542
