notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

Port details
mmdb2 C++ toolkit for working with macromolecular coordinate files
2.0.20 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.0.20Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-07 23:33:09
Last Update: 2020-01-13 03:30:45
SVN Revision: 522849
License: GPLv3 LGPL3
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (43 items)
  1. @ldconfig
  2. /usr/local/share/licenses/mmdb2-2.0.20/catalog.mk
  3. /usr/local/share/licenses/mmdb2-2.0.20/LICENSE
  4. /usr/local/share/licenses/mmdb2-2.0.20/GPLv3
  5. /usr/local/share/licenses/mmdb2-2.0.20/LGPL3
  6. include/mmdb2/hybrid_36.h
  7. include/mmdb2/mmdb_atom.h
  8. include/mmdb2/mmdb_bondmngr.h
  9. include/mmdb2/mmdb_chain.h
  10. include/mmdb2/mmdb_cifdefs.h
  11. include/mmdb2/mmdb_coormngr.h
  12. include/mmdb2/mmdb_cryst.h
  13. include/mmdb2/mmdb_defs.h
  14. include/mmdb2/mmdb_ficif.h
  15. include/mmdb2/mmdb_io_file.h
  16. include/mmdb2/mmdb_io_stream.h
  17. include/mmdb2/mmdb_machine_.h
  18. include/mmdb2/mmdb_manager.h
  19. include/mmdb2/mmdb_mask.h
  20. include/mmdb2/mmdb_math_.h
  21. include/mmdb2/mmdb_math_align.h
  22. include/mmdb2/mmdb_math_bfgsmin.h
  23. include/mmdb2/mmdb_math_fft.h
  24. include/mmdb2/mmdb_math_graph.h
  25. include/mmdb2/mmdb_math_linalg.h
  26. include/mmdb2/mmdb_math_rand.h
  27. include/mmdb2/mmdb_mattype.h
  28. include/mmdb2/mmdb_mmcif_.h
  29. include/mmdb2/mmdb_model.h
  30. include/mmdb2/mmdb_root.h
  31. include/mmdb2/mmdb_rwbrook.h
  32. include/mmdb2/mmdb_selmngr.h
  33. include/mmdb2/mmdb_seqsuperpose.h
  34. include/mmdb2/mmdb_symop.h
  35. include/mmdb2/mmdb_tables.h
  36. include/mmdb2/mmdb_title.h
  37. include/mmdb2/mmdb_uddata.h
  38. include/mmdb2/mmdb_utils.h
  39. include/mmdb2/mmdb_xml_.h
  40. lib/libmmdb2.so
  41. lib/libmmdb2.so.0
  42. lib/libmmdb2.so.0.0.0
  43. libdata/pkgconfig/mmdb2.pc
Collapse this list.
Dependency lines:
  • mmdb2>0:science/mmdb2
To install the port: cd /usr/ports/science/mmdb2/ && make install clean
To add the package: pkg install mmdb2
PKGNAME: mmdb2
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake : devel/gmake
This port is required by:
for Libraries
  1. science/clipper
  2. science/libccp4
  3. science/libssm

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. science/coot*
  2. Collapse this list of deleted ports.
* - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

Configuration Options

USES:

Master Sites:
  1. https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/

Number of commits found: 4

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
13 Jan 2020 03:30:45
Original commit files touched by this commit  2.0.20
Revision:522849
yuri search for other commits by this committer
science/mmdb2: Update 2.0.19 -> 2.0.20

Reported by:	portscout
15 Dec 2018 20:45:04
Original commit files touched by this commit  2.0.19
Revision:487545
yuri search for other commits by this committer
science/mmdb2: Update 2.0.16 -> 2.0.19

Also fix WWW.

Reported by:	portscout
07 Jul 2018 23:40:51
Original commit files touched by this commit  2.0.16
Revision:474144
yuri search for other commits by this committer
science/mmdb2: Update 2.0.12 -> 2.0.16
07 Jul 2018 23:32:57
Original commit files touched by this commit  2.0.12
Revision:474143
yuri search for other commits by this committer
New port: science/mmdb2: C++ toolkit for working with macromolecular coordinate
files

Number of commits found: 4

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
apache24Apr 02
cactiApr 02
chromiumApr 02
haproxyApr 02
haproxy18Apr 02
haproxy19Apr 02
haproxy21Apr 02
rubygem-json*Apr 02
gnutlsMar 31
postgresql10-serverMar 29
postgresql11-serverMar 29
postgresql12-serverMar 29
postgresql96-serverMar 29
gitlab-ceMar 26
jenkinsMar 25

12 vulnerabilities affecting 110 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2020-04-02 20:42:28


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 39073
Broken 588
Deprecated 1065
Ignore 859
Forbidden 5
Restricted 151
No CDROM 72
Vulnerable 22
Expired 2
Set to expire 1033
Interactive 0
new 24 hours 5
new 48 hours13
new 7 days57
new fortnight112
new month184

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2020 Dan Langille. All rights reserved.