science/gchemutils: fix build with glib 2.82

PR: 281083

science/gchemutils: Moved man to share/man

Approved by:    portmgr (blanket)

*/*: Bump consumers of x11-toolkits/gtk30

New version of gtk3 in tree

science/gchemutils: Fix build with llvm16

Sponsored by:	The FreeBSD Foundation

accessibility/at-spi2-core: update to 2.46.0

What's new in at-spi2-core 2.46.0:
* Fix GetInterfaces documentation on org.a11y.atspi.Accessible
  interface.

What's new in at-spi2-core 2.45.91:
* Send device event controller events using the same signature as other
  events.
* Document the Accessible, Action, and Cache dbus interfaces.
* Fix license of atspi-gmain.c (#87).

What's new in at-spi2-core 2.45.90:
* xml: Add some documentation.
* xml: Fix event arguments.

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

*/*: bump all consumers after recent boost upgrade

science/gchemutils: Update to 0.14.17

science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen

textproc/libxml2: bump all LIB_DEPENDS consumers

This is a separate commit to facilitate easier cherry-picking for
quarterly.

PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)

textproc/libxml2: bump all dependencies

This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246

cleanup: remove wrong usage of INSTALLS_OMF

INSTALLS_ICONS: retire the macro and rework the related dependencies

While here, make sure gtk-update-icon-cache is only on run dependency
where added as a dependency
Enforce gtk3 to depend on gtk-update-icon-cache (previously it was
inheriting the dependency)

graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824

science/gchemutils: drop wrong dependency on gtkglext

Remove # $FreeBSD$ from Makefiles.

science/openbabel: Upgrade 2.4.1 -> 3.1.1

PR:		252309
Submitted by:	thierry

Remove textproc/gnome-doc-utils.

It is abandonded upstream for years and is Python-2.7-only.

Adjust consumers, some only need a rebuild, others have their
documentation formerly created by gnome-doc-utils / xml2po removed.

Remove gnomedocutils from USE_GNOME

Submitted by:	rene
Approved by:	portmgr (mat), gnome (kwm)
Differential Revision:	https://reviews.freebsd.org/D23381

Update to 0.10.46 and only keep one libgoffice version

libgoffice 0.10 has been introduced long enough ago 6 years ago, stopping
support
for libgoffice 0.8, it is now more than time, to remove libgoffice 0.8 and only
keep 0.10.

Remove the optionnal goffice option for projects not supporting 0.10.

Add USES=xorg USES=gl, ports categories s

Add USES=xorg and USES=gl to ports in categories starting with 's'
While here, try to sprinkle other USES (mostly gnome and sdl) as needed.

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Drop USES=gecko

This port needs USES=compiler:c++11-lang to build on GCC-based
architectures.

While here, add USES=gl gnome and pet portlint.

PR:		234208
Submitted by:	Piotr Kubaj

Release maintainership.

science/gchemutils: mark BROKEN if XUL option is chosen

Fix the build on HEAD.

Reported by:	pkgfallout

Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845

Update gchemutils to 0.14.16.

Record indirect dependancies.

- Add LICENSE
- Switch to USES=localbase
- Unbreak on 11+ by backporting upstream revision 2055

Approved by:	portmgr blanket

Mark various leaf ports broken on aarch64, and, where appropriate, other
tier-2 archs.

Approved by:	portmgr (tier-2 blanket)

Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight

MASTER_SITES cleanup.

- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
  of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
  no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.

While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.

Also, replace some EXTRACT_SUFX occurences with USES=tar:*.

Checked by:	make fetch-urlall-list
With hat:	portmgr
Sponsored by:	Absolight

Update gchemutils to 0.14.10.

Cleanup plist

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

When linking a library libA with a library libB using libtool, if libB.la
exists, libtool will add all libraries libB.la refers to (dependency_libs
field) to the linker command line and store them in the dependency_libs
field of libA.la.  So everything that subsequently links with libA will also
link to these extra libraries.  This causes too much overlinking.

This commit modifies Mk/Uses/libtool.mk so it empties the dependency_libs
field in .la libraries during staging.  However, because .la libraries have
very limited use when dependency_libs is empty it makes sense to completely
remove them during staging.

So with this commit USES=libtool is modified to remove .la libraries and a
new form (USES=libtool:keepla) is introduced in case they need to be kept
(dependency_libs is still emptied).

The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:

NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE

This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.

This patch also contains updates of libxcb and related ports, pixman, as well

Convert from USE_GECKO to USES=gecko
While here stagify what was not staged yet
Convert to USES=webplugin where needed and add desktop-file-utils dependency to
icedtea-web

Fix compile on 10+

Update to 0.14.7.

Stagify.
Use new lib_depend syntax.
Add USES=libtool

Add patch to unbreak with libc++ 10.0+.

_S_cur is a libstdc++ enum symbol.

Much thanks to rdivacky@ for helping finding this.

- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with [st])

Approved by:	portmgr (bdrewery)

Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

Add explicit dependency on pkgconf (18 ports)

Approved by:	portmgr (bapt, implicit)

Update to 0.14.2.

This version switched to Gtk3.
Unbreak XUL options since it build with the version in ports.
Use USES desktop-file-utils and shared-mime-info.

- Remove www/libxul19, is has been vulnerable and unsupported upstream for
  quite some time.
- Switch all remaining consumers to depend on www/libxul
- Mark ports that don't work with the new libxul BROKEN
- Mark some old ports DEPRECATED with a reasonable timeout

Approved by:	portmgr (miwi)

science/openbabel:
- Update openbabel to 2.3.2
- Switch to CMake build system
- Add PYTHON and CAIRO options
- Don't rename babel binary, mark conflict with ancient biology/babel

science/py-openbabel:
- Merge py-openbabel to openbabel

other:
- chase openbabel update

- Move libxul 1.9.2 to www/libxul19
- Update www/libxul to 10.0.7
- Update all dependent ports to use www/libxul19 (no functional changes)
- Bump PORTREVISION on ports where libxul is a run dependency as the
  resulting package will change.

Submitted by:	Jan Beich <jbeich@tormail.org>
With hat:	gecko

Add a PORTSCOUT tag so only stable releases get found.

OptionsNG my ports.

- update png to 1.5.10

Update to 0.12.10.

Chase both goffice and gnumeric updates.

Feature safe:   yes

- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav

Chase goffice and gnumeric update.

Chase both goffice and gnumeric, bump the PORTREVISION.

Update to 0.12.7.

Chase goffice and gnumeric update.

Update to 0.12.6.

Pick up maintainer [1]
Remove broken check for 6.x.

Approved by:    pav@ [1] (previous maintainer)

Chase the goffice and gnumeric versions.

Update goffice to 0.8.11.

Update to 0.12.3.
Chase goffice, and gnumeric version bumps.

Approved by:    pav (maintainer)

- Remove empty files

Chase goffice and gnumeric updates.

- Correct PORTSDIRS -> PORTSDIR

PR:             ports/149023
Submitted by:   Timothy Beyer <beyert@cs.ucr.edu>

Update to 0.12.1.

Add license.

Chase goffice update.

Chase devel/goffice update.

- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi

- Update to 0.10.12

Chase goffice update.

Chase the goffice 0.8.0 update.

- update to jpeg-8

Chase the goffice version bump.

Forced commit to note the previous commit should have read:

Chase goffice update.

Chase the gchemutils update.

Fix build with new goffice.

- Remove obsolete gecko providers

Approved by:    portmgr (miwi)
Exp-run by:     miwi

Chase the goffice update.

- Update to 0.10.9

Chase the goffice update.

Chase the goffice update.

Feature safe:   yes

- Update to 0.10.8

Feature safe:   yes

Update to 0.10.7.

Update to 0.10.6.

With the change in dependencies of goffice, add an explicit dependency
on libgnomecanvas.

Reported by:    QAT

Chase goffice update.

- Update to 0.10.5

Chase the goffice update.

Chase the goffice update.

- Update naively to 0.10.4 and mark BROKEN: does not compile with goffice-0.7.6

Chase the API changes in goffice-0.7.6.

Fix patching by merging two patches for the same file.

Chase the goffice update.

Merge some patches from gchemutils SVN to fix the build with goffice 0.7.5.

Add some more goffice TYPE name conversions.

Fix another TYPE name change with goffice 0.7.5.

Add another goffice-0.7.5 build fix.

Fix the build with goffice 0.7.5.

Chase the goffice update.

Chase the goffice update.