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Port details
v_sim Visualization of atomic structures
3.9.1_3 science on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.9.0Version of this port present on the latest quarterly branch.
Maintainer: thierry@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2005-12-10 21:46:15
Last Update: 2026-05-28 02:43:02
Commit Hash: 9513775
People watching this port, also watch:: mutt, python, postfix, kicad
License: CeCILL
WWW:
https://gitlab.com/l_sim/v_sim
Description:
V_Sim visualizes atomic structures such as crystals, grain boundaries and so on (either in .d3 format as defined by F. Lancon, or in plain text format as described in the sample page). The rendering is done in pseudo-3D with colored sphere to represent the atoms. The user can interact through many functions to choose the view, the size of the atoms, their color, the background color, the type of fog... Much of it is detailled in the user guide. Moreover V_Sim allows to export the view as image in GIF, PS or more formats.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
pkg-plist: as obtained via: make generate-plist
Expand this list (157 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/v_sim-3.9.1_3/catalog.mk
  3. /usr/local/share/licenses/v_sim-3.9.1_3/LICENSE
  4. /usr/local/share/licenses/v_sim-3.9.1_3/CeCILL
  5. bin/v_sim
  6. lib/girepository-1.0/v_sim-3.9.typelib
  7. lib/libv_sim-3.a
  8. lib/libv_sim-3.la
  9. lib/libv_sim-3.so
  10. lib/libv_sim-3.so.9
  11. lib/libv_sim-3.so.9.0.0
  12. lib/v_sim/plug-ins/libabinit.a
  13. lib/v_sim/plug-ins/libabinit.la
  14. lib/v_sim/plug-ins/libabinit.so
  15. lib/v_sim/plug-ins/libabinit.so.9
  16. lib/v_sim/plug-ins/libabinit.so.9.0.0
  17. lib/v_sim/plug-ins/libarchives.a
  18. lib/v_sim/plug-ins/libarchives.la
  19. lib/v_sim/plug-ins/libarchives.so
  20. lib/v_sim/plug-ins/libarchives.so.9
  21. lib/v_sim/plug-ins/libarchives.so.9.0.0
  22. lib/v_sim/plug-ins/libcube.a
  23. lib/v_sim/plug-ins/libcube.la
  24. lib/v_sim/plug-ins/libcube.so
  25. lib/v_sim/plug-ins/libcube.so.9
  26. lib/v_sim/plug-ins/libcube.so.9.0.0
  27. lib/v_sim/plug-ins/libetsf.a
  28. lib/v_sim/plug-ins/libetsf.la
  29. lib/v_sim/plug-ins/libetsf.so
  30. lib/v_sim/plug-ins/libetsf.so.9
  31. lib/v_sim/plug-ins/libetsf.so.9.0.0
  32. lib/v_sim/plug-ins/libobloader.a
  33. lib/v_sim/plug-ins/libobloader.la
  34. lib/v_sim/plug-ins/libobloader.so
  35. lib/v_sim/plug-ins/libobloader.so.9
  36. lib/v_sim/plug-ins/libobloader.so.9.0.0
  37. lib/v_sim/plug-ins/libplugmsym.a
  38. lib/v_sim/plug-ins/libplugmsym.la
  39. lib/v_sim/plug-ins/libplugmsym.so
  40. lib/v_sim/plug-ins/libplugmsym.so.9
  41. lib/v_sim/plug-ins/libplugmsym.so.9.0.0
  42. lib/v_sim/plug-ins/libpythongi.a
  43. lib/v_sim/plug-ins/libpythongi.la
  44. lib/v_sim/plug-ins/libpythongi.so
  45. lib/v_sim/plug-ins/libpythongi.so.9
  46. lib/v_sim/plug-ins/libpythongi.so.9.0.0
  47. lib/v_sim/plug-ins/libxsf.a
  48. lib/v_sim/plug-ins/libxsf.la
  49. lib/v_sim/plug-ins/libxsf.so
  50. lib/v_sim/plug-ins/libxsf.so.9
  51. lib/v_sim/plug-ins/libxsf.so.9.0.0
  52. share/doc/v_sim/ChangeLog.en
  53. share/doc/v_sim/ChangeLog.fr
  54. share/doc/v_sim/authors
  55. share/doc/v_sim/licence.en.txt
  56. share/doc/v_sim/licence.fr.txt
  57. share/doc/v_sim/pot2surf_help
  58. share/doc/v_sim/readme
  59. share/examples/v_sim/ab_silicon.in
  60. share/examples/v_sim/aluminium.d3
  61. share/examples/v_sim/cinchonidine.xsf.bz2
  62. share/examples/v_sim/cinchonidine.yaml
  63. share/examples/v_sim/cnt.Benzen_on_Ag111
  64. share/examples/v_sim/collisions.ascii
  65. share/examples/v_sim/coord_vib_g_co.xyz
  66. share/examples/v_sim/demo-browser.tar.gz
  67. share/examples/v_sim/demo.ascii
  68. share/examples/v_sim/demo.d3
  69. share/examples/v_sim/demo.xyz
  70. share/examples/v_sim/demo_spin.d3
  71. share/examples/v_sim/demo_spin.spin
  72. share/examples/v_sim/density-sih4.dat
  73. share/examples/v_sim/diff.ascii
  74. share/examples/v_sim/diff.dat
  75. share/examples/v_sim/h2o-dens.cube.bz2
  76. share/examples/v_sim/nq-netcdf.cdl
  77. share/examples/v_sim/nq-netcdf.nc
  78. share/examples/v_sim/planes.xml
  79. share/examples/v_sim/pygi_collisions.v_sim.py
  80. share/examples/v_sim/pygi_isolate.v_sim.py
  81. share/examples/v_sim/pygi_load.v_sim.py
  82. share/examples/v_sim/pygi_plot.v_sim.py
  83. share/examples/v_sim/pygi_rightMenu.v_sim.py
  84. share/examples/v_sim/pygi_rotate.v_sim.py
  85. share/examples/v_sim/si1002x1-o_DS1_DEN-etsf.nc
  86. share/examples/v_sim/silane.nc
  87. share/examples/v_sim/test_isosurfaces.ascii
  88. share/examples/v_sim/test_isosurfaces.surf
  89. share/examples/v_sim/values.xml
  90. share/gir-1.0/v_sim-3.9.gir
  91. share/icons/hicolor/16x16/apps/v_sim.png
  92. share/icons/hicolor/22x22/apps/v_sim.png
  93. share/icons/hicolor/24x24/apps/v_sim.png
  94. share/icons/hicolor/32x32/apps/v_sim.png
  95. share/icons/hicolor/48x48/apps/v_sim.png
  96. share/icons/hicolor/scalable/apps/v_sim.svg
  97. share/locale/fr/LC_MESSAGES/v_sim.mo
  98. share/man/man1/v_sim.1.gz
  99. share/pixmaps/v_sim.xpm
  100. share/v_sim/pixmaps/abinit.png
  101. share/v_sim/pixmaps/archives.png
  102. share/v_sim/pixmaps/axes-angles.png
  103. share/v_sim/pixmaps/axes-box.png
  104. share/v_sim/pixmaps/axes-button.png
  105. share/v_sim/pixmaps/axes-ortho.png
  106. share/v_sim/pixmaps/cube.png
  107. share/v_sim/pixmaps/icone-about.png
  108. share/v_sim/pixmaps/icone-dialog.png
  109. share/v_sim/pixmaps/icone-observe.png
  110. share/v_sim/pixmaps/icone-observe.xpm
  111. share/v_sim/pixmaps/liaison-bandeau.png
  112. share/v_sim/pixmaps/logo_grey.png
  113. share/v_sim/pixmaps/logo_petit.png
  114. share/v_sim/pixmaps/logo_rectangle.png
  115. share/v_sim/pixmaps/msym.png
  116. share/v_sim/pixmaps/nanoquanta.png
  117. share/v_sim/pixmaps/observe-bandeau.png
  118. share/v_sim/pixmaps/openbabel.png
  119. share/v_sim/pixmaps/pythongi.png
  120. share/v_sim/pixmaps/save-bandeau.png
  121. share/v_sim/pixmaps/stock-atomic.png
  122. share/v_sim/pixmaps/stock-axes_20.png
  123. share/v_sim/pixmaps/stock-browser_20.png
  124. share/v_sim/pixmaps/stock-data_20.png
  125. share/v_sim/pixmaps/stock-elements_20.png
  126. share/v_sim/pixmaps/stock-fog_20.png
  127. share/v_sim/pixmaps/stock-four-lights_20.png
  128. share/v_sim/pixmaps/stock-geometry_20.png
  129. share/v_sim/pixmaps/stock-go-and-back.png
  130. share/v_sim/pixmaps/stock-go-around.png
  131. share/v_sim/pixmaps/stock-go-once.png
  132. share/v_sim/pixmaps/stock-inter.png
  133. share/v_sim/pixmaps/stock-isosurfaces_20.png
  134. share/v_sim/pixmaps/stock-map_20.png
  135. share/v_sim/pixmaps/stock-masking.png
  136. share/v_sim/pixmaps/stock-menu-detach.png
  137. share/v_sim/pixmaps/stock-method_20.png
  138. share/v_sim/pixmaps/stock-one-light_20.png
  139. share/v_sim/pixmaps/stock-opengl_20.png
  140. share/v_sim/pixmaps/stock-phonons.png
  141. share/v_sim/pixmaps/stock-planes_20.png
  142. share/v_sim/pixmaps/stock-pythongi_20.png
  143. share/v_sim/pixmaps/stock-select-all_20.png
  144. share/v_sim/pixmaps/stock-spin.png
  145. share/v_sim/pixmaps/stock-union.png
  146. share/v_sim/pixmaps/stock-unselect-all_20.png
  147. share/v_sim/pixmaps/stock_effects-object-colorize_20.png
  148. share/v_sim/pixmaps/stock_media-play.png
  149. share/v_sim/pixmaps/stock_media-stop.png
  150. share/v_sim/pixmaps/stock_rotate_20.png
  151. share/v_sim/pixmaps/xsf.png
  152. share/v_sim/v_sim.par
  153. share/v_sim/v_sim.rc
  154. share/v_sim/v_sim.res
  155. @owner
  156. @group
  157. @mode
Collapse this list.
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • v_sim>0:science/v_sim
To install the port:
cd /usr/ports/science/v_sim/ && make install clean
To add the package, run one of these commands:
  • pkg install science/v_sim
  • pkg install v_sim
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: v_sim
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1776702272 SHA256 (l_sim-v_sim-f96c25a8aa1f4a149dd45fcb52de7216e65996a9_GL0.tar.gz) = 64e948d6e1da41bafba7b7932b27c8055be4ea67ec45f57305b87ecbb5c9c357 SIZE (l_sim-v_sim-f96c25a8aa1f4a149dd45fcb52de7216e65996a9_GL0.tar.gz) = 6272540

Packages (timestamps in pop-ups are UTC):
v_sim
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest3.9.13.9.1--3.9.1n/an/an/a
FreeBSD:13:quarterly3.9.03.9.0-3.8.0_133.9.0n/an/an/a
FreeBSD:14:latest3.9.1_23.9.1_3-3.8.0_13----
FreeBSD:14:quarterly3.9.03.9.0-3.8.0_133.9.0---
FreeBSD:15:latest3.9.1_33.9.1_3n/a3.8.0_13n/an/a--
FreeBSD:15:quarterly3.9.03.9.0n/a-n/an/a--
FreeBSD:16:latest3.9.1_13.9.1_3n/a-n/an/a--
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-XML-LibXML>0 : textproc/p5-XML-LibXML
  2. libarchive>0 : archivers/libarchive
  3. xcrysden : science/xcrysden
  4. bash : shells/bash
  5. gtkdocize : textproc/gtk-doc
  6. abinit : science/abinit
  7. gfortran14 : lang/gcc14
  8. gmake>=4.4.1 : devel/gmake
  9. intltool-extract : textproc/intltool
  10. pkgconf>=1.3.0_1 : devel/pkgconf
  11. python3.11 : lang/python311
  12. gettext-runtime>=0.26 : devel/gettext-runtime
  13. gettext-tools>=0.26 : devel/gettext-tools
  14. as : devel/binutils
  15. autoconf>=2.73 : devel/autoconf
  16. automake>=1.18.1 : devel/automake
  17. libtoolize : devel/libtool
  18. xorgproto>=0 : x11/xorgproto
  19. xorgproto>=0 : x11/xorgproto
  20. x11.pc : x11/libX11
Test dependencies:
  1. python3.11 : lang/python311
Runtime dependencies:
  1. py311-numpy>=1.16 : math/py-numpy@py311
  2. xcrysden : science/xcrysden
  3. libarchive>0 : archivers/libarchive
  4. py311-matplotlib>0 : math/py-matplotlib@py311
  5. abinit : science/abinit
  6. gfortran14 : lang/gcc14
  7. py311-pygobject>=0 : devel/py-pygobject@py311
  8. python3.11 : lang/python311
  9. x11.pc : x11/libX11
Library dependencies:
  1. libgdkglext-x11-1.0.so : x11-toolkits/gtkglext
  2. libfontconfig.so : x11-fonts/fontconfig
  3. libopenbabel.so : science/openbabel
  4. libfreetype.so : print/freetype2
  5. libepoxy.so : graphics/libepoxy
  6. libharfbuzz.so : print/harfbuzz
  7. libyaml.so : textproc/libyaml
  8. libnetcdf.so : science/netcdf
  9. libmsym.so : science/libmsym
  10. libpng16.so : graphics/png
  11. libftgl.so : graphics/ftgl
  12. libxc.so : science/libxc
  13. libblas.so : math/blas
  14. liblapack.so : math/lapack
  15. libGL.so : graphics/libglvnd
  16. libGLU.so : graphics/libGLU
  17. libatk-1.0.so : accessibility/at-spi2-core
  18. libcairo.so : graphics/cairo
  19. libgdk_pixbuf-2.0.so : graphics/gdk-pixbuf2
  20. libglib-2.0.so : devel/glib20
  21. libintl.so : devel/gettext-runtime
  22. libgtk-3.so : x11-toolkits/gtk30
  23. libgirepository-1.0.so : devel/gobject-introspection
  24. libharfbuzz.so : print/harfbuzz
  25. libpango-1.0.so : x11-toolkits/pango
  26. libintl.so : devel/gettext-runtime
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for v_sim-3.9.1_3: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples NLS=on: Native Language Support ===> Use 'make config' to modify these settings
Options name:
science_v_sim
USES:
autoreconf blaslapack compiler:c11 fortran gl gmake gnome libtool:keepla localbase:ldflags pkgconfig python shebangfix tar:bzip2 xorg gettext
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://gitlab.com/l_sim/v_sim/-/archive/f96c25a8aa1f4a149dd45fcb52de7216e65996a9.tar.gz?dummy=/
Collapse this list.

Number of commits found: 115 (showing only 15 on this page)

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Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
3.3.1
11 Dec 2007 21:06:36
Original commit files touched by this commit
thierry search for other commits by this committer
Upgrade to 3.3.1.

Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.3>.
3.3.0_3
24 May 2007 22:21:26
Original commit files touched by this commit
pav search for other commits by this committer
- Chase openbabel update
3.3.0_2
19 May 2007 20:32:57
Original commit files touched by this commit
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
3.3.0_1
12 Apr 2007 06:07:35
Original commit files touched by this commit
lwhsu search for other commits by this committer
- Fix typo, PORTREVISION, not PORTREVERSION, my fault, sorry

Found by:       flz
Approved by:    clsung (mentor)
3.3.0
10 Apr 2007 03:08:59
Original commit files touched by this commit
lwhsu search for other commits by this committer
science/netcdf
- Update to 3.6.2

graphics/gmt
math/grace
math/gri
math/p5-NetCDF
math/py-scientific
math/ruby-netcdf
science/gnudatalanguage
science/minc
science/minc2
science/v_sim
science/vis5d+
- Bump PORTREVISION for the changing of science/netcdf's major library version
number

PR:             111347
Submitted by:   Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
Approved by:    clsung (mentor)
3.3.0
13 Mar 2007 22:24:08
Original commit files touched by this commit
thierry search for other commits by this committer
Upgrade to 3.3.0.

Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.3.0>.
3.2.1
14 Oct 2006 08:54:54
Original commit files touched by this commit
marcus search for other commits by this committer
Chase the GNOME X11BASE to LOCALBASE move, and fix the build with the
new freetype2 where needed.

Submitted by:   mezz, ahze, pav, and many others
Approved by:    portmgr (implicit, kris)
3.2.1
11 Sep 2006 20:09:12
Original commit files touched by this commit
thierry search for other commits by this committer
Upgrade to 3.2.1.

Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.2>.
3.2.0
04 Jul 2006 20:26:31
Original commit files touched by this commit
thierry search for other commits by this committer
Make fetchable again: the tarball has been rerolled to fix a typo in
v_sim-3.2.0/po/fr.po ("Colorsation" -> "Colorisation").

No need to bump PORTREVISION.

Reported by:    linimon
3.2.0
14 Jun 2006 21:13:01
Original commit files touched by this commit
thierry search for other commits by this committer
Fix on on i386 5 by removing -Werror.

Reported by:    pointyhat via Kris
3.2.0
09 Jun 2006 22:00:34
Original commit files touched by this commit
thierry search for other commits by this committer
Upgrade to 3.2.

Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.2.0>.
3.1.2
13 May 2006 04:15:53
Original commit files touched by this commit
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with S
3.1.2
23 Feb 2006 10:40:45
Original commit files touched by this commit
ade search for other commits by this committer
Conversion to a single libtool environment.

Approved by:    portmgr (kris)
3.1.2
22 Jan 2006 02:49:09
Original commit files touched by this commit
edwin search for other commits by this committer
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)
3.1.2
10 Dec 2005 21:45:28
Original commit files touched by this commit
thierry search for other commits by this committer
Add V_Sim, a program to visualize atomic structures such as crystals, grain
boundaries and so on.

Number of commits found: 115 (showing only 15 on this page)

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