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Port details
v_sim Visualization of atomic structures
3.9.0 science on this many watch lists=4 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.8.0_14Version of this port present on the latest quarterly branch.
Maintainer: thierry@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2005-12-10 21:46:15
Last Update: 2025-10-20 10:13:48
Commit Hash: 140b3b8
People watching this port, also watch:: mutt, poudriere, mined, kicad, vim
License: CeCILL
WWW:
https://gitlab.com/l_sim/v_sim
Description:
V_Sim visualizes atomic structures such as crystals, grain boundaries and so on (either in .d3 format as defined by F. Lançon, or in plain text format as described in the sample page). The rendering is done in pseudo-3D with colored sphere to represent the atoms. The user can interact through many functions to choose the view, the size of the atoms, their color, the background color, the type of fog... Much of it is detailled in the user guide. Moreover V_Sim allows to export the view as image in GIF, PS or more formats.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
pkg-plist: as obtained via: make generate-plist
Expand this list (161 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/v_sim-3.9.0/catalog.mk
  3. /usr/local/share/licenses/v_sim-3.9.0/LICENSE
  4. /usr/local/share/licenses/v_sim-3.9.0/CeCILL
  5. bin/v_sim
  6. lib/girepository-1.0/v_sim-3.8.typelib
  7. lib/libv_sim-3.a
  8. lib/libv_sim-3.la
  9. lib/libv_sim-3.so
  10. lib/libv_sim-3.so.8
  11. lib/libv_sim-3.so.8.0.0
  12. lib/python3.11/site-packages/gi/overrides/__pycache__/v_sim.cpython-311.opt-1.pyc
  13. lib/python3.11/site-packages/gi/overrides/__pycache__/v_sim.cpython-311.pyc
  14. lib/python3.11/site-packages/gi/overrides/__pycache__/v_sim.cpython-311.opt-2.pyc
  15. lib/python3.11/site-packages/gi/overrides/v_sim.py
  16. lib/v_sim/plug-ins/libabinit.a
  17. lib/v_sim/plug-ins/libabinit.la
  18. lib/v_sim/plug-ins/libabinit.so
  19. lib/v_sim/plug-ins/libabinit.so.8
  20. lib/v_sim/plug-ins/libabinit.so.8.0.0
  21. lib/v_sim/plug-ins/libarchives.a
  22. lib/v_sim/plug-ins/libarchives.la
  23. lib/v_sim/plug-ins/libarchives.so
  24. lib/v_sim/plug-ins/libarchives.so.8
  25. lib/v_sim/plug-ins/libarchives.so.8.0.0
  26. lib/v_sim/plug-ins/libcube.a
  27. lib/v_sim/plug-ins/libcube.la
  28. lib/v_sim/plug-ins/libcube.so
  29. lib/v_sim/plug-ins/libcube.so.8
  30. lib/v_sim/plug-ins/libcube.so.8.0.0
  31. lib/v_sim/plug-ins/libetsf.a
  32. lib/v_sim/plug-ins/libetsf.la
  33. lib/v_sim/plug-ins/libetsf.so
  34. lib/v_sim/plug-ins/libetsf.so.8
  35. lib/v_sim/plug-ins/libetsf.so.8.0.0
  36. lib/v_sim/plug-ins/libobloader.a
  37. lib/v_sim/plug-ins/libobloader.la
  38. lib/v_sim/plug-ins/libobloader.so
  39. lib/v_sim/plug-ins/libobloader.so.8
  40. lib/v_sim/plug-ins/libobloader.so.8.0.0
  41. lib/v_sim/plug-ins/libplugmsym.a
  42. lib/v_sim/plug-ins/libplugmsym.la
  43. lib/v_sim/plug-ins/libplugmsym.so
  44. lib/v_sim/plug-ins/libplugmsym.so.8
  45. lib/v_sim/plug-ins/libplugmsym.so.8.0.0
  46. lib/v_sim/plug-ins/libpythongi.a
  47. lib/v_sim/plug-ins/libpythongi.la
  48. lib/v_sim/plug-ins/libpythongi.so
  49. lib/v_sim/plug-ins/libpythongi.so.8
  50. lib/v_sim/plug-ins/libpythongi.so.8.0.0
  51. lib/v_sim/plug-ins/libxsf.a
  52. lib/v_sim/plug-ins/libxsf.la
  53. lib/v_sim/plug-ins/libxsf.so
  54. lib/v_sim/plug-ins/libxsf.so.8
  55. lib/v_sim/plug-ins/libxsf.so.8.0.0
  56. share/doc/v_sim/ChangeLog.en
  57. share/doc/v_sim/ChangeLog.fr
  58. share/doc/v_sim/authors
  59. share/doc/v_sim/licence.en.txt
  60. share/doc/v_sim/licence.fr.txt
  61. share/doc/v_sim/pot2surf_help
  62. share/doc/v_sim/readme
  63. share/examples/v_sim/ab_silicon.in
  64. share/examples/v_sim/aluminium.d3
  65. share/examples/v_sim/cinchonidine.xsf.bz2
  66. share/examples/v_sim/cinchonidine.yaml
  67. share/examples/v_sim/cnt.Benzen_on_Ag111
  68. share/examples/v_sim/collisions.ascii
  69. share/examples/v_sim/coord_vib_g_co.xyz
  70. share/examples/v_sim/demo-browser.tar.gz
  71. share/examples/v_sim/demo.ascii
  72. share/examples/v_sim/demo.d3
  73. share/examples/v_sim/demo.xyz
  74. share/examples/v_sim/demo_spin.d3
  75. share/examples/v_sim/demo_spin.spin
  76. share/examples/v_sim/density-sih4.dat
  77. share/examples/v_sim/diff.ascii
  78. share/examples/v_sim/diff.dat
  79. share/examples/v_sim/h2o-dens.cube.bz2
  80. share/examples/v_sim/nq-netcdf.cdl
  81. share/examples/v_sim/nq-netcdf.nc
  82. share/examples/v_sim/planes.xml
  83. share/examples/v_sim/pygi_collisions.v_sim.py
  84. share/examples/v_sim/pygi_isolate.v_sim.py
  85. share/examples/v_sim/pygi_load.v_sim.py
  86. share/examples/v_sim/pygi_plot.v_sim.py
  87. share/examples/v_sim/pygi_rightMenu.v_sim.py
  88. share/examples/v_sim/pygi_rotate.v_sim.py
  89. share/examples/v_sim/si1002x1-o_DS1_DEN-etsf.nc
  90. share/examples/v_sim/silane.nc
  91. share/examples/v_sim/test_isosurfaces.ascii
  92. share/examples/v_sim/test_isosurfaces.surf
  93. share/examples/v_sim/values.xml
  94. share/gir-1.0/v_sim-3.8.gir
  95. share/icons/hicolor/16x16/apps/v_sim.png
  96. share/icons/hicolor/22x22/apps/v_sim.png
  97. share/icons/hicolor/24x24/apps/v_sim.png
  98. share/icons/hicolor/32x32/apps/v_sim.png
  99. share/icons/hicolor/48x48/apps/v_sim.png
  100. share/icons/hicolor/scalable/apps/v_sim.svg
  101. share/locale/fr/LC_MESSAGES/v_sim.mo
  102. share/man/man1/v_sim.1.gz
  103. share/pixmaps/v_sim.xpm
  104. share/v_sim/pixmaps/abinit.png
  105. share/v_sim/pixmaps/archives.png
  106. share/v_sim/pixmaps/axes-angles.png
  107. share/v_sim/pixmaps/axes-box.png
  108. share/v_sim/pixmaps/axes-button.png
  109. share/v_sim/pixmaps/axes-ortho.png
  110. share/v_sim/pixmaps/cube.png
  111. share/v_sim/pixmaps/icone-about.png
  112. share/v_sim/pixmaps/icone-dialog.png
  113. share/v_sim/pixmaps/icone-observe.png
  114. share/v_sim/pixmaps/icone-observe.xpm
  115. share/v_sim/pixmaps/liaison-bandeau.png
  116. share/v_sim/pixmaps/logo_grey.png
  117. share/v_sim/pixmaps/logo_petit.png
  118. share/v_sim/pixmaps/logo_rectangle.png
  119. share/v_sim/pixmaps/msym.png
  120. share/v_sim/pixmaps/nanoquanta.png
  121. share/v_sim/pixmaps/observe-bandeau.png
  122. share/v_sim/pixmaps/openbabel.png
  123. share/v_sim/pixmaps/pythongi.png
  124. share/v_sim/pixmaps/save-bandeau.png
  125. share/v_sim/pixmaps/stock-atomic.png
  126. share/v_sim/pixmaps/stock-axes_20.png
  127. share/v_sim/pixmaps/stock-browser_20.png
  128. share/v_sim/pixmaps/stock-data_20.png
  129. share/v_sim/pixmaps/stock-elements_20.png
  130. share/v_sim/pixmaps/stock-fog_20.png
  131. share/v_sim/pixmaps/stock-four-lights_20.png
  132. share/v_sim/pixmaps/stock-geometry_20.png
  133. share/v_sim/pixmaps/stock-go-and-back.png
  134. share/v_sim/pixmaps/stock-go-around.png
  135. share/v_sim/pixmaps/stock-go-once.png
  136. share/v_sim/pixmaps/stock-inter.png
  137. share/v_sim/pixmaps/stock-isosurfaces_20.png
  138. share/v_sim/pixmaps/stock-map_20.png
  139. share/v_sim/pixmaps/stock-masking.png
  140. share/v_sim/pixmaps/stock-menu-detach.png
  141. share/v_sim/pixmaps/stock-method_20.png
  142. share/v_sim/pixmaps/stock-one-light_20.png
  143. share/v_sim/pixmaps/stock-opengl_20.png
  144. share/v_sim/pixmaps/stock-phonons.png
  145. share/v_sim/pixmaps/stock-planes_20.png
  146. share/v_sim/pixmaps/stock-pythongi_20.png
  147. share/v_sim/pixmaps/stock-select-all_20.png
  148. share/v_sim/pixmaps/stock-spin.png
  149. share/v_sim/pixmaps/stock-union.png
  150. share/v_sim/pixmaps/stock-unselect-all_20.png
  151. share/v_sim/pixmaps/stock_effects-object-colorize_20.png
  152. share/v_sim/pixmaps/stock_media-play.png
  153. share/v_sim/pixmaps/stock_media-stop.png
  154. share/v_sim/pixmaps/stock_rotate_20.png
  155. share/v_sim/pixmaps/xsf.png
  156. share/v_sim/v_sim.par
  157. share/v_sim/v_sim.rc
  158. share/v_sim/v_sim.res
  159. @owner
  160. @group
  161. @mode
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USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • v_sim>0:science/v_sim
To install the port:
cd /usr/ports/science/v_sim/ && make install clean
To add the package, run one of these commands:
  • pkg install science/v_sim
  • pkg install v_sim
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: v_sim
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1665839345 SHA256 (l_sim-v_sim-9dc8e5a0b2f4e7237ac50a922b87d234ff56a6e5_GL0.tar.gz) = 8dcdfa0ff17e9ea41f56fb498c2efef20054086fddd427a552e48f17dcee4546 SIZE (l_sim-v_sim-9dc8e5a0b2f4e7237ac50a922b87d234ff56a6e5_GL0.tar.gz) = 6357693

Packages (timestamps in pop-ups are UTC):
v_sim
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest3.9.0---3.9.0n/an/an/a
FreeBSD:13:quarterly3.8.0_143.9.0-3.8.0_133.9.0n/an/an/a
FreeBSD:14:latest3.9.0--3.8.0_133.9.0---
FreeBSD:14:quarterly3.9.03.9.0-3.8.0_133.9.0---
FreeBSD:15:latest3.9.0-n/a3.8.0_13n/an/a--
FreeBSD:15:quarterly3.9.03.9.0n/a-n/an/a--
FreeBSD:16:latest3.9.0-n/a-n/an/a--
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-XML-LibXML>0 : textproc/p5-XML-LibXML
  2. libarchive>0 : archivers/libarchive
  3. xcrysden : science/xcrysden
  4. bash : shells/bash
  5. abinit : science/abinit
  6. gfortran13 : lang/gcc13
  7. gmake>=4.4.1 : devel/gmake
  8. intltool-extract : textproc/intltool
  9. pkgconf>=1.3.0_1 : devel/pkgconf
  10. python3.11 : lang/python311
  11. gettext-runtime>=0.22_1 : devel/gettext-runtime
  12. msgfmt : devel/gettext-tools
  13. as : devel/binutils
  14. autoconf>=2.72 : devel/autoconf
  15. automake>=1.17 : devel/automake
  16. libtoolize : devel/libtool
  17. xorgproto>=0 : x11/xorgproto
  18. xorgproto>=0 : x11/xorgproto
  19. x11.pc : x11/libX11
Test dependencies:
  1. python3.11 : lang/python311
Runtime dependencies:
  1. py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
  2. xcrysden : science/xcrysden
  3. libarchive>0 : archivers/libarchive
  4. py311-matplotlib>0 : math/py-matplotlib@py311
  5. abinit : science/abinit
  6. gfortran13 : lang/gcc13
  7. py311-pygobject>=0 : devel/py-pygobject@py311
  8. python3.11 : lang/python311
  9. x11.pc : x11/libX11
Library dependencies:
  1. libgdkglext-x11-1.0.so : x11-toolkits/gtkglext
  2. libfontconfig.so : x11-fonts/fontconfig
  3. libopenbabel.so : science/openbabel
  4. libfreetype.so : print/freetype2
  5. libharfbuzz.so : print/harfbuzz
  6. libyaml.so : textproc/libyaml
  7. libnetcdf.so : science/netcdf
  8. libmsym.so : science/libmsym
  9. libftgl.so : graphics/ftgl
  10. libxc.so : science/libxc
  11. libblas.so : math/blas
  12. liblapack.so : math/lapack
  13. libGL.so : graphics/libglvnd
  14. libGLU.so : graphics/libGLU
  15. libatk-1.0.so : accessibility/at-spi2-core
  16. libcairo.so : graphics/cairo
  17. libgdk_pixbuf-2.0.so : graphics/gdk-pixbuf2
  18. libglib-2.0.so : devel/glib20
  19. libintl.so : devel/gettext-runtime
  20. libgtk-3.so : x11-toolkits/gtk30
  21. libgirepository-1.0.so : devel/gobject-introspection
  22. libharfbuzz.so : print/harfbuzz
  23. libpango-1.0.so : x11-toolkits/pango
  24. libintl.so : devel/gettext-runtime
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for v_sim-3.9.0: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples NLS=on: Native Language Support ===> Use 'make config' to modify these settings
Options name:
science_v_sim
USES:
autoreconf blaslapack compiler:c11 fortran gl gmake gnome libtool:keepla localbase:ldflags pkgconfig python shebangfix tar:bzip2 xorg gettext
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://gitlab.com/l_sim/v_sim/-/archive/9dc8e5a0b2f4e7237ac50a922b87d234ff56a6e5.tar.gz?dummy=/
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Number of commits found: 108 (showing only 8 on this page)

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Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
3.2.1
11 Sep 2006 20:09:12
Original commit files touched by this commit
thierry search for other commits by this committer
Upgrade to 3.2.1.

Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.2>.
3.2.0
04 Jul 2006 20:26:31
Original commit files touched by this commit
thierry search for other commits by this committer
Make fetchable again: the tarball has been rerolled to fix a typo in
v_sim-3.2.0/po/fr.po ("Colorsation" -> "Colorisation").

No need to bump PORTREVISION.

Reported by:    linimon
3.2.0
14 Jun 2006 21:13:01
Original commit files touched by this commit
thierry search for other commits by this committer
Fix on on i386 5 by removing -Werror.

Reported by:    pointyhat via Kris
3.2.0
09 Jun 2006 22:00:34
Original commit files touched by this commit
thierry search for other commits by this committer
Upgrade to 3.2.

Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.2.0>.
3.1.2
13 May 2006 04:15:53
Original commit files touched by this commit
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with S
3.1.2
23 Feb 2006 10:40:45
Original commit files touched by this commit
ade search for other commits by this committer
Conversion to a single libtool environment.

Approved by:    portmgr (kris)
3.1.2
22 Jan 2006 02:49:09
Original commit files touched by this commit
edwin search for other commits by this committer
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)
3.1.2
10 Dec 2005 21:45:28
Original commit files touched by this commit
thierry search for other commits by this committer
Add V_Sim, a program to visualize atomic structures such as crystals, grain
boundaries and so on.

Number of commits found: 108 (showing only 8 on this page)

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