Ports marked with a ^* actually reside within another category but have science listed as a secondary category.

py-gsd GSD (General Simulation Data) file format for Python

3.4.1_3 3.4.1_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-05-13 20:32:53

Also Listed In: python

License: BSD2CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}gsd>0:science/py-gsd@${PY_FLAVOR}

py-gwlearn Geographically weighted modeling based on scikit-learn

0.2.0 0.2.0Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2026-05-05 14:00:06

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}gwlearn>0:science/py-gwlearn@${PY_FLAVOR}

py-h5json Tools and library for representing HDF5 in JSON

1.1.3_4 1.1.3_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-01-26 10:07:40

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}h5json>0:science/py-h5json@${PY_FLAVOR}

py-h5netcdf netCDF4 via h5py

1.8.1 1.8.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-03-08 11:18:12

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}h5netcdf>0:science/py-h5netcdf@${PY_FLAVOR}

py-h5py General-purpose Python interface to the HDF5 library

3.16.0_1 3.16.0_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2009-07-13 14:07:48

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR}

py-h5pyd h5py compatible client lib for HDF REST API

0.18.0_3 0.18.0_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-04-07 18:39:09

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}h5pyd>0:science/py-h5pyd@${PY_FLAVOR}

py-hdmf Hierarchical data modeling framework for modern science data standards

6.1.0 6.1.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-06-27 19:48:22

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}hdmf>0:science/py-hdmf@${PY_FLAVOR}

py-hiPhive High-order force constants for the masses

1.5_2 1.5_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-29 03:45:19

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}hiPhive>0:science/py-hiPhive@${PY_FLAVOR}

py-hoomd-blue Molecular dynamics and Monte Carlo soft matter simulation

7.0.1 7.0.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-01-21 10:03:17

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}hoomd-blue>0:science/py-hoomd-blue@${PY_FLAVOR}

py-icet Pythonic approach to alloy cluster expansions

3.2_2 3.2_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-01-25 01:45:09

License: MPL20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}icet>0:science/py-icet@${PY_FLAVOR}

py-igor2 Interface for reading binary IGOR files

0.5.13 0.5.13Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-06-27 19:48:26

Also Listed In: python

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}igor2>0:science/py-igor2@${PY_FLAVOR}

py-in-n-out Plugable dependency injection and result processing

0.2.1^* 0.2.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-12-13 02:15:15

Also Listed In: devel

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}in-n-out>0:devel/py-in-n-out@${PY_FLAVOR}

py-inequality Spatial inequality analysis for PySAL

1.1.2_2 1.1.2_2Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2021-01-03 20:31:53

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}inequality>0:science/py-inequality@${PY_FLAVOR}

py-ipygany 3-D scientific visualization in Jupyter Notebooks

0.5.0_6 0.5.0_5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-01-09 03:27:11

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}ipygany>0:science/py-ipygany@${PY_FLAVOR}

py-jupyter_jsmol JSmol viewer widget for Jupyter Notebooks and JupyterLab

2022.1.0_3 2022.1.0_3Version of this port present on the latest quarterly branch.

Maintainer: thierry@FreeBSD.org

Port Added: 2020-12-22 11:48:16

People watching this port, also watch:: vtk9, SparseBitSet, py312-cysignals, python

Also Listed In: devel python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}jupyter-jsmol>0:science/py-jupyter_jsmol@${PY_FLAVOR}

py-kim-query Helper routines for querying the OpenKIM repository

4.0.0 4.0.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-05-03 19:38:39

Also Listed In: python

License: CDDL

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}kim-query>0:science/py-kim-query@${PY_FLAVOR}

py-kimpy Python interface to the KIM-API

2.1.4 2.1.4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-10-07 18:39:07

Also Listed In: python

License: CDDL

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}kimpy>0:science/py-kimpy@${PY_FLAVOR}

py-kinematics Python module to do attitude kinematics

0.1.7_4 0.1.7_4Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2018-06-24 20:05:56

Also Listed In: python

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}kinematics>0:science/py-kinematics@${PY_FLAVOR}

py-kliff KIM-based Learning-Integrated Fitting Framework

0.4.4_3 0.4.4_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-05-03 21:11:54

Also Listed In: python

License: LGPL21

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}kliff>0:science/py-kliff@${PY_FLAVOR}

py-klusta Spike detection and automatic clustering for spike sorting

3.0.16 3.0.16Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-06-27 19:48:09

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}klusta>0:science/py-klusta@${PY_FLAVOR}

py-kpLib Library for finding optimal Generalized Monkhorst-Pack k-points grid

1.1.1_3 1.1.1_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-07-17 06:30:11

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}kpLib>0:science/py-kpLib@${PY_FLAVOR}

py-liac-arff Read and write ARFF files in Python

2.5.0_1 2.5.0_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2020-05-16 10:50:57

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}liac-arff>0:science/py-liac-arff@${PY_FLAVOR}

py-libgetar Library to read and write GEneric Trajectory ARchives

1.1.7_2 1.1.7_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-06-27 18:00:16

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}libgetar>0:science/py-libgetar@${PY_FLAVOR}

py-libpysal Core components of PySAL A library of spatial analysis functions

4.15.0 4.14.1_3Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2021-01-03 20:32:25

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}libpysal>0:science/py-libpysal@${PY_FLAVOR}

py-libwignernj Python bindings for libwignernj

0.8.0 Package not present on quarterly.This port was created during this quarter. It will be in the next quarterly branch but not the current one.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-07-27 23:27:13

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}wignernj>0:science/py-libwignernj@${PY_FLAVOR}

py-lifelines Survival analysis in Python

0.19.5_6 0.19.5_5Version of this port present on the latest quarterly branch.

Maintainer: rm@FreeBSD.org

Port Added: 2018-11-13 18:35:19

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}lifelines>0:science/py-lifelines@${PY_FLAVOR}

py-mayavi Application and library for 3D visualization and plotting in Python

4.8.2_10^* 4.8.2_9Version of this port present on the latest quarterly branch.

BROKEN: compilation fails: VTK throws std::runtime_erroe, see https://gitlab.kitware.com/vtk/vtk/-/issues/19994
IGNORE: is marked as broken: compilation fails: VTK throws std::runtime_erroe, see https://gitlab.kitware.com/vtk/vtk/-/issues/19994

Maintainer: yuri@FreeBSD.org

Port Added: 2016-08-06 07:04:50

Also Listed In: graphics python

License: BSD3CLAUSE LGPL21 LGPL20 EPL LGPL3 BSD2CLAUSE APACHE11

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mayavi>0:graphics/py-mayavi@${PY_FLAVOR}

py-mdp Modular toolkit for Data Processing

3.6 3.5_6Version of this port present on the latest quarterly branch.

DEPRECATED: No upstream activity since 2020
EXPIRATION DATE: 2026-08-31

Maintainer: bofh@FreeBSD.org

Port Added: 2008-09-27 18:53:27

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mdp>0:science/py-mdp@${PY_FLAVOR}

py-mercantile Web mercator XYZ tile utilities

1.2.1_1 1.2.1_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2024-08-04 17:24:56

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mercantile>0:science/py-mercantile@${PY_FLAVOR}

py-meshio I/O for many mesh formats

5.3.5_2 5.3.5_1Version of this port present on the latest quarterly branch.

Maintainer: thierry@FreeBSD.org

Port Added: 2022-11-19 16:45:07

People watching this port, also watch:: vtk9, SparseBitSet, py312-cysignals, python

Also Listed In: cad python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}meshio>0:science/py-meshio@${PY_FLAVOR}

py-mmcif Library for accessing mmCIF data

1.1.1 0.90.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-10-04 01:36:47

Also Listed In: biology python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mmcif>0:science/py-mmcif@${PY_FLAVOR}

py-mmtf-python MMTF (Macromolecular Transmission Format) Python API

1.1.3_4 1.1.3_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-05-13 17:14:24

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mmtf-python>0:science/py-mmtf-python@${PY_FLAVOR}

py-mne Python project for MEG and EEG data analysis

1.11.0_3 1.11.0_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-06 08:30:11

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mne>0:science/py-mne@${PY_FLAVOR}

py-molmod Collection of molecular modelling tools for python

1.4.8_4 1.4.8_3Version of this port present on the latest quarterly branch.

DEPRECATED: Depends on expired lang/cython0
EXPIRATION DATE: 2026-09-15

Maintainer: yuri@FreeBSD.org

Port Added: 2018-09-14 03:11:13

Also Listed In: python

License: GPLv3+

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}molmod>0:science/py-molmod@${PY_FLAVOR}

py-morphio Neuron morphology IO library

3.4.2 3.4.2Version of this port present on the latest quarterly branch.

Maintainer: wen@FreeBSD.org

Port Added: 2026-05-01 00:51:11

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}morphio>0:science/py-morphio@${PY_FLAVOR}

py-mp-api API for server for the Materials Project

0.34.0_2 0.34.0_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-07-03 17:51:22

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mp-api>0:science/py-mp-api@${PY_FLAVOR}

py-mpcontribs-client Client library for MPContribs API on contribs-api.materialsproject.org

5.10.1_4 5.10.1_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-07-03 05:51:15

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mpcontribs-client>0:science/py-mpcontribs-client@${PY_FLAVOR}

py-mplhep Matplotlib styles for HEP

1.3.2 0.3.59_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-06-23 11:00:28

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mplhep>0:science/py-mplhep@${PY_FLAVOR}

py-mplhep-data Font (Data) sub-package for mplhep

0.0.4 0.0.4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-06-23 11:00:25

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mplhep-data>0:science/py-mplhep-data@${PY_FLAVOR}

py-mrchem MultiResolution Chemistry

1.1.4 1.1.4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-11-15 03:09:24

Also Listed In: python

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mrchem>0:science/py-mrchem@${PY_FLAVOR}

py-ncrystal Library for thermal neutron transport in crystals and other materials

4.4.6 4.4.6Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-11-08 22:06:04

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}ncrystal>0:science/py-ncrystal@${PY_FLAVOR}

py-neo Package for representing electrophysiology data in Python

0.14.5 0.14.5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-06 08:30:15

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}neo>0:science/py-neo@${PY_FLAVOR}

py-netCDF4 Python Interface to the NetCDF Library (versions 3 and 4)

1.7.2_2 1.7.2_1Version of this port present on the latest quarterly branch.

There is no maintainer for this port.

Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: 2009-02-23 20:19:59

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}netCDF4>0:science/py-netCDF4@${PY_FLAVOR}

py-netcdf-flattener Flatten NetCDF files while preserving references

1.2.0_2 1.2.0_2Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2020-12-10 21:31:52

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}netcdf-flattener>0:science/py-netcdf-flattener@${PY_FLAVOR}

py-nglview IPython widget to view molecular structures and trajectories

4.0.1 4.0.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-08-01 09:45:36

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}nglview>0:science/py-nglview@${PY_FLAVOR}

py-nibabel Read/write some common neuroimaging file formats

5.4.2 5.4.2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-01-21 02:07:56

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR}

py-nixio Python reimplementation of NIX data format

1.5.4 1.5.4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-06-27 19:48:17

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}nixio>0:science/py-nixio@${PY_FLAVOR}

py-obspy Python framework for seismological observatories

1.5.0_1 1.5.0_1Version of this port present on the latest quarterly branch.

DEPRECATED: Depends on expired databases/py-sqlalchemy10
EXPIRATION DATE: 2026-08-31

Maintainer: wen@FreeBSD.org

Port Added: 2013-05-17 13:55:51

Also Listed In: python

License: LGPL3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}obspy>0:science/py-obspy@${PY_FLAVOR}

py-oddt Open Drug Discovery Toolkit

0.7_5 0.7_4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2019-02-09 22:53:28

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}oddt>0:science/py-oddt@${PY_FLAVOR}

py-openEMS Electromagnetic field solver using the EC-FDTD method

0.0.36_1 0.0.36_1Version of this port present on the latest quarterly branch.

DEPRECATED: Depends on expired lang/cython0
EXPIRATION DATE: 2026-09-15

Maintainer: yuri@FreeBSD.org

Port Added: 2024-08-29 07:15:08

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}openEMS>0:science/py-openEMS@${PY_FLAVOR}

py-openbabel Chemical toolbox designed to speak the many languages of chemical data

3.2.0 3.2.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2008-07-19 14:01:08

License: GPLv2+

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}openbabel>0:science/py-openbabel@${PY_FLAVOR}

py-openpiv Python module for Particle Image Velocimetry

0.25.4 0.25.4Version of this port present on the latest quarterly branch.

Maintainer: makc@FreeBSD.org

Port Added: 2018-04-02 08:44:07

Also Listed In: python

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}openpiv>0:science/py-openpiv@${PY_FLAVOR}

py-optking Python version of the PSI4 geometry optimization program by R.A. King

0.5.0_1 0.5.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-12-08 11:12:25

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}optking>0:science/py-optking@${PY_FLAVOR}

py-paida Pure Python scientific analysis package

3.2.1.2.10_2 3.2.1.2.10_2Version of this port present on the latest quarterly branch.

There is no maintainer for this port.

Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: 2005-07-18 16:23:21

Also Listed In: python

License: not specified in port

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}paida>0:science/py-paida@${PY_FLAVOR}

py-paramz Parameterization framework

0.9.6_3 0.9.6_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-12-18 06:20:17

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}paramz>0:science/py-paramz@${PY_FLAVOR}

py-penaltymodel DWave: Utilities and interfaces for using penalty models

1.3.0_2 1.3.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 23:03:10

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}penaltymodel>0:science/py-penaltymodel@${PY_FLAVOR}

py-periodictable Extensible periodic table of the elements pre-populated with data

2.1.0_2 2.1.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-05-04 17:18:16

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}periodictable>0:science/py-periodictable@${PY_FLAVOR}

py-phono3py Software to calculate phonon-phonon interaction and related properties

4.4.0 3.28.0_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-09-14 05:37:30

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}phono3py>0:science/py-phono3py@${PY_FLAVOR}

py-phonopy Package for phonon calculations at harmonic and quasi-harmonic levels

4.4.0_1 4.2.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-09-14 05:01:29

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}phonopy>0:science/py-phonopy@${PY_FLAVOR}

py-phonors Rust kernels for phonopy and phono3py

0.3.0_1 0.3.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-06-29 19:33:10

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}phonors>0:science/py-phonors@${PY_FLAVOR}

py-plumed Python interface to PLUMED

2.10.0 2.10.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-06-02 22:54:20

Also Listed In: python

License: LGPL3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}plumed>0:science/py-plumed@${PY_FLAVOR}

py-pnetcdf Object-oriented python interface to the PnetCDF library

1.0.0_5 1.0.0_4Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2025-01-28 17:07:12

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pnetcdf>0:science/py-pnetcdf@${PY_FLAVOR}

py-printree Pretty print python objects in a tree format

0.2.1^* 0.2.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-05-16 19:03:09

Also Listed In: devel

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}printree>0:devel/py-printree@${PY_FLAVOR}

py-probeinterface Python package to handle probe layout and geometry

0.3.2 0.3.2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-06-27 11:22:49

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}probeinterface>0:science/py-probeinterface@${PY_FLAVOR}

py-pupynere NetCDF file reader and writer

1.0.15_12 1.0.15_12Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2013-09-02 11:27:57

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pupynere>0:science/py-pupynere@${PY_FLAVOR}

py-py3Dmol IPython interface for embedding 3Dmol.js views

2.4.2_1 2.4.2_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-06-15 20:57:13

Also Listed In: python

License: WTFPL

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}py3Dmol>0:science/py-py3Dmol@${PY_FLAVOR}

py-pyaixi Implementation of the MC-AIXI-CTW AI algorithm

1.0.4_2 1.0.4_2Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2013-12-08 14:12:58

Also Listed In: python

License: CC-BY-SA-3.0

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyaixi>0:science/py-pyaixi@${PY_FLAVOR}

py-pyberny Optimizer of molecular geometries with respect to the total energy

0.7.0 0.6.3_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-10-16 23:57:26

License: MPL20

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyberny>0:science/py-pyberny@${PY_FLAVOR}

py-pyconify Iconify for python: Universal icon framework

0.2.1^* 0.2.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-12-13 04:24:04

Also Listed In: devel

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyconify>0:devel/py-pyconify@${PY_FLAVOR}

py-pycsw OGC CSW server implementation

2.6.2_2 2.6.2_2Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2020-01-18 18:24:26

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pycsw>0:science/py-pycsw@${PY_FLAVOR}

py-pydicom Read, modify, and write DICOM files with Python code

3.0.2 3.0.2Version of this port present on the latest quarterly branch.

Maintainer: wen@FreeBSD.org

Port Added: 2009-01-16 00:23:58

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pydicom>0:science/py-pydicom@${PY_FLAVOR}

py-pydoe Design of Experiments for Python

1.0.2 1.0.2Version of this port present on the latest quarterly branch.

Maintainer: python@FreeBSD.org

Port Added: 2026-04-22 11:54:22

Also Listed In: math python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pydoe>0:science/py-pydoe@${PY_FLAVOR}

py-pygeodesy Pure Python geodesy tools

23.4.23_1 23.4.23_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2018-12-06 20:30:56

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pygeodesy>0:science/py-pygeodesy@${PY_FLAVOR}

py-pygeometa Generate metadata for geospatial datasets

0.15.3_5 0.15.3_5Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2020-01-18 18:24:42

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pygeometa>0:science/py-pygeometa@${PY_FLAVOR}

py-pygmo2 Python platform to perform parallel computations of optimisation tasks

2.19.8 2.19.8Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-06-09 18:53:08

Also Listed In: graphics

License: MPL20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pygmo2>0:science/py-pygmo2@${PY_FLAVOR}

py-pyked Package for manipulating Chemical Kinetics Experimental Data files

0.5.0 0.4.1.16_5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-09-11 07:15:15

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyked>0:science/py-pyked@${PY_FLAVOR}

py-pymatgen Python Materials Genomics is a robust materials analysis code

2026.5.4_1 2026.5.4_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-06-15 23:49:49

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymatgen>0:science/py-pymatgen@${PY_FLAVOR}

py-pymatgen-analysis-alloys PyMatgen add-on library with classes useful for describing alloys

0.0.9 0.0.9Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-07-02 16:42:35

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

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Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymatgen-analysis-alloys>0:science/py-pymatgen-analysis-alloys@${PY_FLAVOR}

py-pymatgen-core Python Materials Genomics core data structures and algorithms

2026.5.18 2026.5.18Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-04-20 08:03:05

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymatgen-core>0:science/py-pymatgen-core@${PY_FLAVOR}

py-pymbd Many-body dispersion library

0.15.0 0.12.5_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-03 17:54:02

License: MPL20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymbd>0:science/py-pymbd@${PY_FLAVOR}

py-pymeeus Python implementation of Jean Meeus astronomical routines

0.5.12_1^* 0.5.12_1Version of this port present on the latest quarterly branch.

There is no maintainer for this port.

Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: 2019-12-15 08:24:55

Also Listed In: astro python

License: LGPL3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymeeus>0:astro/py-pymeeus@${PY_FLAVOR}

py-pymol OpenGL-based molecular visualization system

3.0.0_4 3.0.0_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2017-12-19 19:49:25

Also Listed In: biology python

License: PyMOL

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymol>0:science/py-pymol@${PY_FLAVOR}

py-pynrrd Pure Python module for reading and writing NRRD files

1.1.3_2 1.1.3_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-06 08:30:20

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pynrrd>0:science/py-pynrrd@${PY_FLAVOR}

py-pynwb Package for working with Neurodata stored in the NWB format

4.1.0 3.1.3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-06-27 19:48:24

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pynwb>0:science/py-pynwb@${PY_FLAVOR}

py-pyosf Python library for synching with OpenScienceFramework projects

1.0.5_1 1.0.5_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-03-24 06:38:58

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyosf>0:science/py-pyosf@${PY_FLAVOR}

py-pyphot Library for computing photometry from spectra

2.1.1_1 2.1.1_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-09-22 05:54:08

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyphot>0:science/py-pyphot@${PY_FLAVOR}

py-pyprecice Coupling library for partitioned multi-physics simulations

3.1.2_3 3.1.2_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-06-20 16:54:20

License: LGPL3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyprecice>0:science/py-pyprecice@${PY_FLAVOR}

py-pyqtgraph Scientific graphics and GUI library for Python

0.13.7_4^* 0.13.7_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-06-11 08:49:28

People watching this port, also watch:: tmux, libjxl, tcpdump, vigenere

Also Listed In: graphics python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyqtgraph>0:graphics/py-pyqtgraph@${PY_FLAVOR}

py-pyqubo DWave: Python DSL for constructing QUBOs from mathematical expressions

1.4.0_5 1.4.0_4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-15 21:15:14

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyqubo>0:science/py-pyqubo@${PY_FLAVOR}

py-pysal Meta Package for PySAL - A library of spatial analysis functions

26.1_1 26.1_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2014-09-04 16:24:39

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pysal>0:science/py-pysal@${PY_FLAVOR}

py-pyscf Python module for quantum chemistry

2.12.1_2 2.12.1_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-06-05 20:03:12

Also Listed In: python

License: BSD2CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyscf>0:science/py-pyscf@${PY_FLAVOR}

py-pysolar Simulate solar irradiation at any point on Earth

0.13_2^* 0.13_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-12 00:00:05

Also Listed In: astro python

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pysolar>0:astro/py-pysolar@${PY_FLAVOR}

py-pyteomics Python modules for proteomics data analysis

4.7.5_5 4.7.5_5Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2015-11-02 09:24:59

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyteomics>0:science/py-pyteomics@${PY_FLAVOR}

py-qcelemental Essentials for quantum chemistry

0.50.4 0.50.3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2019-03-31 10:59:37

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}qcelemental>0:science/py-qcelemental@${PY_FLAVOR}

py-qcengine Quantum chemistry program executor and IO standardizer (QCSchema)

0.50.0 0.50.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2019-03-31 09:35:14

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}qcengine>0:science/py-qcengine@${PY_FLAVOR}

py-qcmanybody Many-body expansion tools for quantum chemistry

0.7.1 0.7.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-04-21 07:25:57

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}qcmanybody>0:science/py-qcmanybody@${PY_FLAVOR}

py-qiskit Open-source SDK for working with quantum computers

2.2.1_9 2.2.1_8Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-09 07:18:27

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}qiskit>0:science/py-qiskit@${PY_FLAVOR}

py-qspin Learn quantum spin and entanglement

2.3.3_3 2.3.3_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2017-11-10 21:55:35

Also Listed In: education

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}qspin>0:science/py-qspin@${PY_FLAVOR}

py-quantities Support for physical quantities with units, based on numpy

0.16.4_2 0.16.4_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-03-29 20:37:59

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}quantities>0:science/py-quantities@${PY_FLAVOR}

py-rmf Library to support reading and writing of Rich Molecular Format files

1.7.1 1.7.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-07-01 06:49:32

Also Listed In: graphics

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}rmf>0:science/py-rmf@${PY_FLAVOR}